TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135231.7 + phase: 0 /pseudo
         (943 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC9277 similar to GB|AAP13413.1|30023760|BT006305 At3g55530 {Ara...    30  2.3
AV767223                                                               30  2.3
TC8930 UP|Q40204 (Q40204) RAB1D, complete                              28  5.2
TC9386                                                                 28  6.8
AV427444                                                               28  8.8

>TC9277 similar to GB|AAP13413.1|30023760|BT006305 At3g55530 {Arabidopsis
           thaliana;}, partial (79%)
          Length = 1297

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 13/21 (61%), Positives = 13/21 (61%)
 Frame = +2

Query: 322 GHR*IFGLTFYDRSRSKCYFC 342
           G R* F  TFYDR R KC  C
Sbjct: 686 GFR*CFYCTFYDRGRDKCSSC 748


>AV767223 
          Length = 256

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -3

Query: 328 GLTFYDRSRSKCYFCLHQGSCLAENQ 353
           G    +R+ S+CYFCL  GSCL+ +Q
Sbjct: 239 GFAGVERAYSECYFCL--GSCLSNDQ 168


>TC8930 UP|Q40204 (Q40204) RAB1D, complete
          Length = 943

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = -3

Query: 457 SGVSNF*SSLLPLWLLSHGHCWAQPQLC--LAQH 488
           SG+     + LP WL S  HCW    +C  LA+H
Sbjct: 707 SGLGRAAPTFLPNWLSSDLHCWRPSIICAGLARH 606


>TC9386 
          Length = 751

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 17/47 (36%), Positives = 24/47 (50%)
 Frame = +2

Query: 667 YACFLCLSFFYTGLE*NRSFGVRCNTPFLPLPQLRKLYFICWRLCRL 713
           Y   LCLS F TGLE  R F     + +L L  ++ L ++ + L  L
Sbjct: 83  YFSILCLSSFVTGLEPLRFFFSTSQSSYLFLQVIQTLAYVLYLLLLL 223


>AV427444 
          Length = 428

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 778 PLNNIESRGSLPWPEDTNVTSMRPSLLTSTVQVLVFVFAM 817
           P+NN E+    P P   N++ M+PSL  +    L F+F +
Sbjct: 405 PINNFETTTR*PCP---NISCMQPSLFINDFSRLSFIFVI 295


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.365    0.165    0.642 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,647,729
Number of Sequences: 28460
Number of extensions: 325637
Number of successful extensions: 4623
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2558
Number of HSP's successfully gapped in prelim test: 172
Number of HSP's that attempted gapping in prelim test: 1980
Number of HSP's gapped (non-prelim): 2916
length of query: 943
length of database: 4,897,600
effective HSP length: 99
effective length of query: 844
effective length of database: 2,080,060
effective search space: 1755570640
effective search space used: 1755570640
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.6 bits)
S2: 60 (27.7 bits)