TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135230.3 + phase: 0 /pseudo
         (605 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC18578                                                               238  3e-63
TC18577                                                               167  4e-42
TC8023                                                                 47  7e-06
BI420244                                                               32  0.22
TC8460 similar to GB|AAN73294.1|25141199|BT002297 At5g12010/F14F...    32  0.29
TC15168 similar to UP|O04084 (O04084) Serine carboxypeptidase is...    31  0.65
TC9532 similar to UP|THIC_MYCLE (Q9ZBL0) Thiamine biosynthesis p...    28  5.5
AV767290                                                               27  7.2
TC17242                                                                27  9.4
TC16424 similar to UP|Q9FZF1 (Q9FZF1) T2E6.18, partial (39%)           27  9.4

>TC18578 
          Length = 600

 Score =  238 bits (606), Expect = 3e-63
 Identities = 117/141 (82%), Positives = 127/141 (89%)
 Frame = +3

Query: 262 RPSFGIAFDIDGVILLGNTPVGGSPAALRKLYNYDGTLKFPYVFLTNGGGIPEAKRASEL 321
           RPSFGIAFDIDGVILLGN+PVGGSP ALR+LY+ DG LK P+VFLTNGGG PEA RASEL
Sbjct: 144 RPSFGIAFDIDGVILLGNSPVGGSPGALRRLYDADGRLKIPFVFLTNGGGFPEATRASEL 323

Query: 322 SELLGLNVSASQVLQGHSPFRQLVNRFEDKLIVAAGKGEPALVMSEYGFKNVISIDAYAS 381
           S+LLGL+V  SQVLQGHSPF+QLVNRFE+KLIVA GKGEPA  MSEYGFKNV+S+D YAS
Sbjct: 324 SQLLGLDVLPSQVLQGHSPFKQLVNRFENKLIVAVGKGEPAAAMSEYGFKNVLSMDEYAS 503

Query: 382 RFENIDPLAPYKKWTTKLATT 402
            FENIDPLA YKKWTTKLATT
Sbjct: 504 CFENIDPLATYKKWTTKLATT 566


>TC18577 
          Length = 536

 Score =  167 bits (423), Expect = 4e-42
 Identities = 83/98 (84%), Positives = 89/98 (90%)
 Frame = +2

Query: 507 PHPSVFKNAEIVLQKHVPRVDEDSYDINHKNAQPFQTLYMIGDNPAVDIRGARQTGHPWF 566
           PHPSVFKNAE VLQ+ VP VD +  D N+KNAQ FQTLYMIGDNPAVDIRGA+QTGHPWF
Sbjct: 2   PHPSVFKNAENVLQQFVPCVDLN--DFNNKNAQYFQTLYMIGDNPAVDIRGAQQTGHPWF 175

Query: 567 SILTRTGVFKGKENHDKFPADLVVDTVEEAVDYILAKE 604
           SILTRTGVFKGKENHDKFPADLVVDTVEEAVD+IL +E
Sbjct: 176 SILTRTGVFKGKENHDKFPADLVVDTVEEAVDFILTRE 289


>TC8023 
          Length = 1089

 Score = 47.4 bits (111), Expect = 7e-06
 Identities = 23/45 (51%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
 Frame = +3

Query: 3  PFDIEAYFQKRDVEDTYIVNRFIQRRKKLEEGSASRT-RKYFNRD 46
          PFD+EAY ++ ++ED YI N F +RR  + EG   R  RKY NRD
Sbjct: 54 PFDVEAYKRQSEIEDRYIFNLFRKRRNLILEGYTPRVKRKYLNRD 188


>BI420244 
          Length = 571

 Score = 32.3 bits (72), Expect = 0.22
 Identities = 29/97 (29%), Positives = 45/97 (45%), Gaps = 8/97 (8%)
 Frame = -1

Query: 259 LLIRPSFGIAFDIDGVILLGNTPVGGSPAALRKLYNYDGTLKFPY--------VFLTNGG 310
           +L R  F +  DIDG  LL     G +PAA        G  K           V     G
Sbjct: 412 ILYRKIFRLGKDIDGDDLLSGVTGGATPAA-------SGPNKAVRRRVV*ALEVSSRPSG 254

Query: 311 GIPEAKRASELSELLGLNVSASQVLQGHSPFRQLVNR 347
           G+  + +A+  ++LLG+N+S   VL+G + + +L+ R
Sbjct: 253 GVEMSNKANLEADLLGMNLSE*IVLEGDA*WLELIMR 143


>TC8460 similar to GB|AAN73294.1|25141199|BT002297 At5g12010/F14F18_180
           {Arabidopsis thaliana;}, partial (36%)
          Length = 880

 Score = 32.0 bits (71), Expect = 0.29
 Identities = 25/105 (23%), Positives = 44/105 (41%)
 Frame = +3

Query: 61  NEPTYDDAMFRRRYRMQKHVFLRIVGDLSSSDNYFTQQVDAANKKGISPLAKCTTAMRML 120
           + P + +  FRR +RM K  F  I  +L S+      + +   ++ I    +    +  L
Sbjct: 357 SHPDFPEEEFRRSFRMSKATFEMICRELDSA----VTKKNTMLREAIPVRQRVAVCIWRL 524

Query: 121 AYGVAADAVDEYIKIGSSTTLECLLRFCKGIIRLYEQVYLRAPTQ 165
           A G     V +   +G ST  + +L  C  I  +    +LR P +
Sbjct: 525 ATGDPLRLVAKRFGLGISTCHKLVLEVCSAIKTVLMPKFLRWPDE 659


>TC15168 similar to UP|O04084 (O04084) Serine carboxypeptidase isolog,
           30227-33069, partial (55%)
          Length = 1005

 Score = 30.8 bits (68), Expect = 0.65
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -2

Query: 291 KLYNYDGTLKFPYVFLTNGGGIPEAKRASELSELLGL 327
           K++ Y  T    Y +L  GG  P  K     SELLGL
Sbjct: 911 KIFIYGITKSSQYAYLVEGGDSPRRKEEKNASELLGL 801


>TC9532 similar to UP|THIC_MYCLE (Q9ZBL0) Thiamine biosynthesis protein
           thiC, partial (14%)
          Length = 1259

 Score = 27.7 bits (60), Expect = 5.5
 Identities = 12/17 (70%), Positives = 14/17 (81%)
 Frame = +3

Query: 244 IISLLLLCYPILINDLL 260
           I+ LLLLCYPIL N L+
Sbjct: 555 ILLLLLLCYPILSNKLI 605


>AV767290 
          Length = 484

 Score = 27.3 bits (59), Expect = 7.2
 Identities = 20/73 (27%), Positives = 33/73 (44%), Gaps = 5/73 (6%)
 Frame = -3

Query: 173 HVSETRGFPWMIGSIDCMH----WEWKNYPKAWEGKLAFANHVRARSRVASR-ITSRSSE 227
           H  + + F  M+   DC +    +EWK+ P   + K+         SRV S+ I + S E
Sbjct: 419 HEGDWKDFVKMLPESDCRYAVVDFEWKDQPTVTKSKICLILWSPEYSRVRSKMIYAASQE 240

Query: 228 AHVDKV*NTETNL 240
           A   K+ + +  L
Sbjct: 239 AVASKMADVQRQL 201


>TC17242 
          Length = 461

 Score = 26.9 bits (58), Expect = 9.4
 Identities = 10/17 (58%), Positives = 14/17 (81%)
 Frame = -3

Query: 507 PHPSVFKNAEIVLQKHV 523
           P P V++ AEI+LQKH+
Sbjct: 135 PSPEVYE*AEIILQKHI 85


>TC16424 similar to UP|Q9FZF1 (Q9FZF1) T2E6.18, partial (39%)
          Length = 537

 Score = 26.9 bits (58), Expect = 9.4
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +3

Query: 376 IDAYASRFENIDPLAPYKKWTTKLATTQNPKFDESGPQIDVFSERVQA 423
           ++AY ++ + +D L    ++TTKL    +P    S   +   S+R++A
Sbjct: 207 VEAYLAKRDGVDKLLKISRYTTKLLLASSPNLLRSDTNL---SQRLKA 341


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.322    0.139    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,000,918
Number of Sequences: 28460
Number of extensions: 134245
Number of successful extensions: 604
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of query: 605
length of database: 4,897,600
effective HSP length: 96
effective length of query: 509
effective length of database: 2,165,440
effective search space: 1102208960
effective search space used: 1102208960
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)