BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135230.12 + phase: 0
(1373 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC9812 164 1e-40
TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Ar... 34 0.14
TC15357 similar to UP|Q9ZV06 (Q9ZV06) At2g39020 protein, partial... 33 0.31
TC8507 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetyla... 32 0.53
TC17395 similar to UP|Q9LN83 (Q9LN83) T12C24.17, partial (37%) 32 0.69
TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (... 32 0.90
TC19515 similar to UP|Q9YGK0 (Q9YGK0) Vitellogenin precursor, pa... 32 0.90
AI967639 31 1.5
TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly pr... 30 2.0
TC10362 similar to UP|Q8L5A7 (Q8L5A7) Steroid sulfotransferase-l... 30 2.6
TC13518 similar to UP|Q9LVK2 (Q9LVK2) Gb|AAD25600.1, partial (5%) 30 3.4
TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%) 30 3.4
TC13268 homologue to UP|CYSZ_CUCMA (P49299) Citrate synthase, gl... 29 4.4
AV416122 29 4.4
TC13940 29 4.4
AV780096 29 5.8
AV411485 29 5.8
TC15394 similar to UP|Q9FFQ8 (Q9FFQ8) Emb|CAB62360.1, partial (16%) 29 5.8
TC11509 similar to UP|Q80TY1 (Q80TY1) MKIAA0553 protein (Fragmen... 29 5.8
BI417786 29 5.8
>TC9812
Length = 777
Score = 164 bits (414), Expect = 1e-40
Identities = 84/109 (77%), Positives = 89/109 (81%), Gaps = 2/109 (1%)
Frame = +1
Query: 1266 VTVACNGTGEQSGYDLCSDLNVDPPCIEDDKEAVQLLTTDTRPNAEDQVVVNPVSEVGNS 1325
VTVA GT EQ GYDLCSDLNVDPP I+DDK V+ L++DTRPNAED V VNP SE GN
Sbjct: 4 VTVAQQGTEEQXGYDLCSDLNVDPPVIDDDK-GVEFLSSDTRPNAEDHVDVNPASEEGNV 180
Query: 1326 CEDNSMTWEALDLNPTR--ELCQENSTNEDFGDESFGRERPVGLLSASL 1372
CE NSM WEAL LNPT ELCQENSTNEDF +ESFGRERPVGLLSASL
Sbjct: 181 CEGNSMAWEALSLNPTATGELCQENSTNEDFDEESFGRERPVGLLSASL 327
>TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Arabidopsis
thaliana;}, partial (44%)
Length = 700
Score = 34.3 bits (77), Expect = 0.14
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = +2
Query: 27 SGDEEDVQRRNSGNESDEDDDEFDDADSGAGSDDFDLLELGETGAE 72
SGDE+D + G + D D+D+ DDA G DD + E E G E
Sbjct: 20 SGDEDD---DDDGEDDDGDEDDDDDAPGGGDDDDDEEDEEEEGGVE 148
>TC15357 similar to UP|Q9ZV06 (Q9ZV06) At2g39020 protein, partial (69%)
Length = 1578
Score = 33.1 bits (74), Expect = 0.31
Identities = 27/97 (27%), Positives = 44/97 (44%), Gaps = 3/97 (3%)
Frame = +2
Query: 737 DSLENRLLADENGVGQSR---FWRKGQKNVAHKDDRDERSEVPLLGCNSAMKKRKMKFGA 793
+ +E RL + GV + + ++ A+ D E EVP+ ++ KK K K A
Sbjct: 47 EQVEERLDFYDKGVAPRKNIDVMKSAIESAANNDAEMETEEVPV---EASSKKSKKKQKA 217
Query: 794 ADFGERDEDANLLSSNPSKIDDLPAFSLKRKSKKKPG 830
AD G+ +N ++D + K+K KKK G
Sbjct: 218 ADEGDEMAVDKPTVTNGDAVEDHKSEKKKKKKKKKRG 328
>TC8507 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetylase
HD2-P39, partial (40%)
Length = 620
Score = 32.3 bits (72), Expect = 0.53
Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = +3
Query: 29 DEEDVQRRNSGNESDEDDD---EFDDADSGAGSDDFD 62
DEED +S +E DEDDD E DDADS + D D
Sbjct: 3 DEED----DSDDEDDEDDDSDEEMDDADSDSDESDSD 101
>TC17395 similar to UP|Q9LN83 (Q9LN83) T12C24.17, partial (37%)
Length = 570
Score = 32.0 bits (71), Expect = 0.69
Identities = 25/74 (33%), Positives = 35/74 (46%)
Frame = -3
Query: 38 SGNESDEDDDEFDDADSGAGSDDFDLLELGETGAEFCQIGNQTCSIPLELYDLSGLEDIL 97
+GNE E ++E DDA SGA + + E E G E +IG + E G ED+L
Sbjct: 346 AGNEVAETEEERDDAASGAVKEHGSVTE--EHGDEEVEIGGEAEGEVGEENTDGGGEDVL 173
Query: 98 SVDVWNDCLSEEER 111
++ E ER
Sbjct: 172 GEATGDEAPEEAER 131
>TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (SPBC3D6.14C
protein) (Fragment), partial (15%)
Length = 543
Score = 31.6 bits (70), Expect = 0.90
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = +3
Query: 19 PMSKESMSSGDEEDVQRRNSGNESDEDDDEFDDADSGAGSDDFDLLELGETGAEFCQI 76
P ++ + +E+D + + +E D+DDD DD D G +D D + E G+E ++
Sbjct: 228 PKPVQTDNEEEEDDDEEEDDEDEDDDDDD--DDDDDGEEEEDDDDDDEEEEGSEEVEV 395
Score = 28.1 bits (61), Expect = 9.9
Identities = 14/55 (25%), Positives = 27/55 (48%)
Frame = +3
Query: 18 EPMSKESMSSGDEEDVQRRNSGNESDEDDDEFDDADSGAGSDDFDLLELGETGAE 72
+P+ ++ D+++ + ++ D+DDD+ DD + DD D E G E
Sbjct: 231 KPVQTDNEEEEDDDEEEDDEDEDDDDDDDDD-DDGEEEEDDDDDDEEEEGSEEVE 392
>TC19515 similar to UP|Q9YGK0 (Q9YGK0) Vitellogenin precursor, partial (3%)
Length = 504
Score = 31.6 bits (70), Expect = 0.90
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +3
Query: 14 DTECEPMSKESMSSGDEEDVQRRNSGNESDEDDDEFDDADSGAGSDDFD 62
++E E + DE+ + G ESD DD DD DS + DD D
Sbjct: 84 ESEDEEDDDDDDDGDDEDPLLGPGLGRESDSDDMSHDDYDSASDIDDED 230
>AI967639
Length = 335
Score = 30.8 bits (68), Expect = 1.5
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +1
Query: 24 SMSSGDEEDVQRRNSGN---ESDEDDDEFDDADSGAGSDDFD 62
S S GDEED + E +E+DD+ DD D + S+D D
Sbjct: 88 SSSEGDEEDEEEDQGDEYNLEDEEEDDDDDDDDDLSISEDSD 213
>TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly protein
1-like protein 3, partial (81%)
Length = 1298
Score = 30.4 bits (67), Expect = 2.0
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 29 DEEDVQRRNSGNESDEDDDEFDDADSGAGSDDFDLLELGE 68
D ED++ + + DED+D+ DD + DD + E GE
Sbjct: 758 DFEDIEEDDEDGDEDEDEDDDDDEEEEDDDDDDEDDEEGE 877
Score = 29.3 bits (64), Expect = 4.4
Identities = 11/36 (30%), Positives = 21/36 (57%)
Frame = +2
Query: 22 KESMSSGDEEDVQRRNSGNESDEDDDEFDDADSGAG 57
+E GDE++ + + E ++DDD+ +D + G G
Sbjct: 773 EEDDEDGDEDEDEDDDDDEEEEDDDDDDEDDEEGEG 880
>TC10362 similar to UP|Q8L5A7 (Q8L5A7) Steroid sulfotransferase-like protein
(At5g07010), partial (23%)
Length = 425
Score = 30.0 bits (66), Expect = 2.6
Identities = 25/108 (23%), Positives = 44/108 (40%)
Frame = +3
Query: 121 MDQETFVQTLKELFTGCNFQFGSPVKKLFDMLKGGLCEPRVALYREGLNFVQKRQHYHLL 180
+DQE + +K+L + G K L+ + +G C+P + ++ QK H
Sbjct: 69 IDQEELSEEMKDLILSLPRERGWRTKYLY-LFQGFWCQPAEI---QAISTFQK----HFQ 224
Query: 181 KKHQNTMVSNLCQMRDAWLNCRGYSIEERLRVLNIMTSQKSLMGEKMD 228
KH + V+ + + WL ++I R + L S L D
Sbjct: 225 AKHSDVFVATVPKSGTTWLKALTFAIVNRQKHLTFSKSHPLLNSNPHD 368
>TC13518 similar to UP|Q9LVK2 (Q9LVK2) Gb|AAD25600.1, partial (5%)
Length = 459
Score = 29.6 bits (65), Expect = 3.4
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 35 RRNSGNESDEDDDEFDDADSGAGSDDFDLLELGETG 70
R+N+ + +++++DDA S A SD F+L L G
Sbjct: 10 RKNANYSEEHEEEDYDDAASYASSDLFELDHLAVLG 117
>TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%)
Length = 1008
Score = 29.6 bits (65), Expect = 3.4
Identities = 14/32 (43%), Positives = 18/32 (55%)
Frame = -2
Query: 29 DEEDVQRRNSGNESDEDDDEFDDADSGAGSDD 60
DEED + E D+DDDE DD + G D+
Sbjct: 428 DEEDEDGEDQ--EDDDDDDEDDDEEDDGGEDE 339
>TC13268 homologue to UP|CYSZ_CUCMA (P49299) Citrate synthase, glyoxysomal
precursor (GCS) , partial (31%)
Length = 478
Score = 29.3 bits (64), Expect = 4.4
Identities = 11/37 (29%), Positives = 25/37 (66%)
Frame = -2
Query: 858 KPQKKPYILITPTVHTGFSFSIMHLLTAVRTAMISPP 894
KP+ ++ +TP++++G ++ L+ +RTA ++PP
Sbjct: 237 KPESFCFLALTPSMNSGMFSTVPISLSILRTASLAPP 127
>AV416122
Length = 414
Score = 29.3 bits (64), Expect = 4.4
Identities = 18/53 (33%), Positives = 25/53 (46%), Gaps = 2/53 (3%)
Frame = +3
Query: 10 VSRVDTECEPMSKESMSSGDE--EDVQRRNSGNESDEDDDEFDDADSGAGSDD 60
VS D +C KE+ + +E DVQ E DE+D E +D + DD
Sbjct: 216 VSATD-DCSSQPKEAANDDNEPDNDVQFEGEEEEDDEEDKEEEDEEEDDEDDD 371
Score = 28.5 bits (62), Expect = 7.6
Identities = 12/32 (37%), Positives = 19/32 (58%)
Frame = +3
Query: 28 GDEEDVQRRNSGNESDEDDDEFDDADSGAGSD 59
G+EE+ + E +E+DDE DD++ A D
Sbjct: 300 GEEEEDDEEDKEEEDEEEDDEDDDSNGEAEVD 395
>TC13940
Length = 808
Score = 29.3 bits (64), Expect = 4.4
Identities = 16/35 (45%), Positives = 20/35 (56%)
Frame = -1
Query: 489 NPKSKKRKAERESPDLSYTAYRSSSPQVSNRLFSS 523
+PK KKRK S DL A +S +P VSN +S
Sbjct: 433 DPKPKKRKKGVVSEDLGQKALQSLTPAVSNHTSTS 329
>AV780096
Length = 564
Score = 28.9 bits (63), Expect = 5.8
Identities = 17/49 (34%), Positives = 25/49 (50%)
Frame = +1
Query: 24 SMSSGDEEDVQRRNSGNESDEDDDEFDDADSGAGSDDFDLLELGETGAE 72
S S +EE+ Q ++ +EDD+E + A SDD E E+G E
Sbjct: 46 SDSEEEEEEQQEEEVHDQIEEDDEELEAVARSASSDD----EPDESGGE 180
>AV411485
Length = 389
Score = 28.9 bits (63), Expect = 5.8
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 556 ARGEETESDSSEQWDDDDDNN 576
AR + E DSSE+ DDDDD +
Sbjct: 364 ARWDNVEDDSSEEEDDDDDED 302
>TC15394 similar to UP|Q9FFQ8 (Q9FFQ8) Emb|CAB62360.1, partial (16%)
Length = 1093
Score = 28.9 bits (63), Expect = 5.8
Identities = 19/65 (29%), Positives = 26/65 (39%)
Frame = +2
Query: 471 KRPAQELGMSSLFKYEDWNPKSKKRKAERESPDLSYTAYRSSSPQVSNRLFSSDFRTKSS 530
K+ A E +S + P SKKRK E E PD A S++ D S
Sbjct: 254 KQTAAEHDSASASLSKSKQPASKKRKTENEKPDTKGKASSKKQTDKSSKALVKDQGKSKS 433
Query: 531 QEKIR 535
+K +
Sbjct: 434 GKKAK 448
>TC11509 similar to UP|Q80TY1 (Q80TY1) MKIAA0553 protein (Fragment), partial
(3%)
Length = 624
Score = 28.9 bits (63), Expect = 5.8
Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = -1
Query: 1231 HREREEED-FDDDGTSSTKKWKRQKKDVADQSDQAP 1265
HRE+EEE+ + DD S +K++ Q+++ +S +P
Sbjct: 315 HREKEEEESWRDDSYSHKEKYRPQREECESESFNSP 208
>BI417786
Length = 513
Score = 28.9 bits (63), Expect = 5.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 28 GDEEDVQRRNSGNESDEDDDEFDDADSGAG 57
G E V+ R+ G D+DDD+ DD D G
Sbjct: 194 GVREVVRVRDGGGHDDDDDDDDDDDDDEKG 105
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.312 0.131 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,967,981
Number of Sequences: 28460
Number of extensions: 291070
Number of successful extensions: 1478
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 1276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1404
length of query: 1373
length of database: 4,897,600
effective HSP length: 101
effective length of query: 1272
effective length of database: 2,023,140
effective search space: 2573434080
effective search space used: 2573434080
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Medicago: description of AC135230.12