TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135162.11 + phase: 0 /pseudo
         (385 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP066094                                                               82  2e-16
TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-rela...    69  1e-12
AV424544                                                               59  1e-09
BP075943                                                               57  4e-09
TC16554 homologue to UP|AAN71719 (AAN71719) Glycogen synthase ki...    27  4.4
TC18348 similar to UP|BAD09200 (BAD09200) Short-chain dehydrogen...    27  4.4
AV411594                                                               24  6.7
TC12970                                                                27  7.5
BP037734                                                               26  9.8
AV766665                                                               26  9.8
BP045283                                                               26  9.8

>BP066094 
          Length = 532

 Score = 81.6 bits (200), Expect = 2e-16
 Identities = 41/100 (41%), Positives = 65/100 (65%)
 Frame = +2

Query: 1   NEDMIFRLHKALYGLKQSLRAWNKRIVNFLVQQEFVKCKAEYNVYVKNSKDSNLVHICLY 60
           N D IF+L K+LYGLKQ+ RAW +R+ +FL++ E V+ K +  ++ K  KD  L+ + +Y
Sbjct: 236 NSDHIFKLKKSLYGLKQAPRAWYERLSSFLLENEXVRGKVDTTLFCKTYKDDILI-VQIY 412

Query: 61  VDDLIVTDSNLAEIEAFKGHMMKKFNMTDLGKLTYFLGME 100
           VDD+I   +N +  + F   M  +F M  +G+L YFLG++
Sbjct: 413 VDDIIFGSANPSLCKEFSEMMQAEFEMRMMGELKYFLGIQ 532


>TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-related Pol
           polyprotein from transposon TNT 1-94 [Contains: Protease
           ; Reverse transcriptase ; Endonuclease] , partial (9%)
          Length = 747

 Score = 69.3 bits (168), Expect = 1e-12
 Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
 Frame = +2

Query: 28  NFLVQQEFVKCKAEYNVYVKNSKDSNLVHICLYVDDLIVTDSNLAEIEAFKGHMMKKFNM 87
           +F++   + +  +++  Y K   D++ + + LYVDD++V   N   ++  K  + ++F+M
Sbjct: 8   SFIMSLGYNRLSSDHCTYHKRFDDNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDM 187

Query: 88  TDLGKLTYFLGMEF--TKTSEGLVKHQKKYASDILKRFNMLNCNPAST 133
            DLG     LGM+    +    +   QK Y   +L+RFNM +CNP ST
Sbjct: 188 KDLGPANKILGMQIHRDRKDRRIWLSQKNYLQKVLRRFNMQDCNPIST 331


>AV424544 
          Length = 276

 Score = 58.9 bits (141), Expect = 1e-09
 Identities = 29/81 (35%), Positives = 52/81 (63%)
 Frame = +3

Query: 35  FVKCKAEYNVYVKNSKDSNLVHICLYVDDLIVTDSNLAEIEAFKGHMMKKFNMTDLGKLT 94
           +++   +++++ K  +D++   I +YVDDLI+  ++L EI+  K  +  +F + DLG L 
Sbjct: 36  YIQSAHDHSLFTK-FRDASFTVILVYVDDLILAGNDLNEIQCVKNKLDIQFRIKDLGTLK 212

Query: 95  YFLGMEFTKTSEGLVKHQKKY 115
           YFLG+E  ++S GL   Q+KY
Sbjct: 213 YFLGLEVARSSCGLFLSQRKY 275


>BP075943 
          Length = 547

 Score = 57.4 bits (137), Expect = 4e-09
 Identities = 23/64 (35%), Positives = 44/64 (67%)
 Frame = -3

Query: 57  ICLYVDDLIVTDSNLAEIEAFKGHMMKKFNMTDLGKLTYFLGMEFTKTSEGLVKHQKKYA 116
           + LYVDD+++  +++ EI+  K  +  +F + DLG+  YFLG+E  +++ G+V +Q+KYA
Sbjct: 521 LLLYVDDVLLAGNDMHEIQLVKSSLHDQFRIKDLGEAKYFLGLEIARSTSGIVLNQRKYA 342

Query: 117 SDIL 120
             ++
Sbjct: 341 LQLI 330


>TC16554 homologue to UP|AAN71719 (AAN71719) Glycogen synthase kinase 3 beta
           protein kinase DWARF12 , partial (71%)
          Length = 927

 Score = 27.3 bits (59), Expect = 4.4
 Identities = 22/79 (27%), Positives = 38/79 (47%), Gaps = 8/79 (10%)
 Frame = -1

Query: 24  KRIVNFLVQQEFVKCKAEYNVYVKNSKDSNLVHICLYVDD--------LIVTDSNLAEIE 75
           KRI  ++++ +     +  +V ++ S + NLVHI L++DD        +++ D       
Sbjct: 648 KRINQYILRLQISVANSRNSVDIRQSPE-NLVHIKLHIDDRHSLISITVVLDDPIHGFWN 472

Query: 76  AFKGHMMKKFNMTDLGKLT 94
            F   + KKF  T  GK T
Sbjct: 471 IFHH*IQKKFICTCSGKET 415


>TC18348 similar to UP|BAD09200 (BAD09200) Short-chain
           dehydrogenase/reductase family protein-like, partial
           (12%)
          Length = 611

 Score = 27.3 bits (59), Expect = 4.4
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 25  RIVNFLVQQ-EFVKCKAEYNVYVKNSKDSNLVHIC 58
           RIVNF       + C    N+Y+ ++K   L+HIC
Sbjct: 102 RIVNFFKPYFNILNCCLIVNLYITSNKSCMLIHIC 206


>AV411594 
          Length = 244

 Score = 23.9 bits (50), Expect(2) = 6.7
 Identities = 10/35 (28%), Positives = 18/35 (50%)
 Frame = +2

Query: 96  FLGMEFTKTSEGLVKHQKKYASDILKRFNMLNCNP 130
           FL     K+ +G++  ++KYA  +L     + C P
Sbjct: 50  FLRT*IAKSKKGILLSRRKYALQLLDDTRNMGCKP 154



 Score = 21.2 bits (43), Expect(2) = 6.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 81  MMKKFNMTDLGKLTYFLGME 100
           + K F +  L  + YFLG+E
Sbjct: 6   LAKSFKLKVLDDMKYFLGLE 65


>TC12970 
          Length = 565

 Score = 26.6 bits (57), Expect = 7.5
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 324 CCMEEASILKQSFIFSENK*TKRLSSSY 351
           CC++   +L  SF+FS +K +K L  S+
Sbjct: 410 CCLDRCIVLFFSFVFSSSKISKLLFFSF 493


>BP037734 
          Length = 490

 Score = 26.2 bits (56), Expect = 9.8
 Identities = 30/109 (27%), Positives = 45/109 (40%), Gaps = 5/109 (4%)
 Frame = +2

Query: 12  LYGLKQSLRAWNKRIVNFLVQQEFVKCKAEYNVYVKNS-----KDSNLVHICLYVDDLIV 66
           LYGLKQ  R W +R         F++ KA +NV V        K   L   C+ +  L  
Sbjct: 194 LYGLKQLPRDWFERFT-------FLRSKAVHNVKVLRL*GIQ*KGRELC*FCM*MKVLTG 352

Query: 67  TDSNLAEIEAFKGHMMKKFNMTDLGKLTYFLGMEFTKTSEGLVKHQKKY 115
            D +  +++ F      +        L  F G  + K  +G+V  Q+KY
Sbjct: 353 DD*DERQVKEFS---YSRI*NRRPRSLNMFFG-NYCKI*KGIVVSQRKY 487


>AV766665 
          Length = 601

 Score = 26.2 bits (56), Expect = 9.8
 Identities = 13/45 (28%), Positives = 23/45 (50%)
 Frame = +1

Query: 56  HICLYVDDLIVTDSNLAEIEAFKGHMMKKFNMTDLGKLTYFLGME 100
           H+C+YVD + +   +  E +  +  +  +F   DL KL Y   +E
Sbjct: 112 HLCVYVDHMTIVGDDEVEKQILREKLAPQF---DLKKLKYISVIE 237


>BP045283 
          Length = 484

 Score = 26.2 bits (56), Expect = 9.8
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = +3

Query: 29  FLVQQEFVKCKAEYNVYVKNSKDSNLVHICLYVDDLIVTDSNLAEI 74
           FL + + +K K    +++   + S L+H+CL ++ +    S+L  I
Sbjct: 309 FLEKMDLIKKKKNSILHLLTKQASQLIHVCLIIEAINKICSHLTII 446


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.366    0.163    0.562 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,725,124
Number of Sequences: 28460
Number of extensions: 68316
Number of successful extensions: 765
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 214
Number of HSP's gapped (non-prelim): 573
length of query: 385
length of database: 4,897,600
effective HSP length: 92
effective length of query: 293
effective length of database: 2,279,280
effective search space: 667829040
effective search space used: 667829040
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.6 bits)
S2: 56 (26.2 bits)