BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135160.10 + phase: 0
(373 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CB826914 57 6e-09
BP052653 56 1e-08
BI419994 55 2e-08
BG662160 54 3e-08
BP051299 54 4e-08
AI967453 49 1e-06
TC14800 weakly similar to UP|Q9FHP3 (Q9FHP3) Genomic DNA, chromo... 49 2e-06
AV427033 47 7e-06
AW720409 47 7e-06
AV768207 46 9e-06
AV423520 46 1e-05
AV413010 46 1e-05
BP076687 45 2e-05
AV424374 45 3e-05
AV414925 44 6e-05
BP035281 42 1e-04
TC18730 similar to UP|Q963J2 (Q963J2) Voltage-dependent calcium ... 42 2e-04
TC8398 weakly similar to UP|Q84KK1 (Q84KK1) S haplotype-specific... 40 6e-04
TC14802 weakly similar to UP|CAD56661 (CAD56661) S locus F-box (... 40 8e-04
TC17551 weakly similar to UP|AAR24662 (AAR24662) At5g26960, part... 33 0.10
>CB826914
Length = 575
Score = 56.6 bits (135), Expect = 6e-09
Identities = 47/137 (34%), Positives = 67/137 (48%), Gaps = 18/137 (13%)
Frame = +1
Query: 26 LGEELEIEILLRLPTKSLSRFKCVQKSWNNIIKSPYFAT----RRNRLLILQNAPNMKFI 81
+ +L IEILL LP KS+ RFK V K W ++I P FA+ R L+ ++ ++ I
Sbjct: 166 MDRDLIIEILLMLPVKSIVRFKAVCKLWRSLISDPLFASLHFQRAAPSLLFADSHAIRTI 345
Query: 82 FCDG--GNDQKSIPIKSLF---------PQDVARIEIYGSCDGVFCLKGISSCITRH--- 127
+G + + S PI F P++ I I+GSC G + IS+ H
Sbjct: 346 DLEGPLQSHRVSQPINCHFLSNYHDLSLPRNC--ISIHGSCRGFLLITWISNIGYGHPWN 519
Query: 128 DQLILWNPTTKEVHLIP 144
D L LWNP+T IP
Sbjct: 520 DSLYLWNPSTHVHKPIP 570
>BP052653
Length = 552
Score = 55.8 bits (133), Expect = 1e-08
Identities = 43/132 (32%), Positives = 61/132 (45%), Gaps = 15/132 (11%)
Frame = +1
Query: 20 SIERMKLGE----ELEIEILLRLPTKSLSRFKCVQKSWNNIIKSPYF--------ATRRN 67
SIE + L +L ++ILLRLP +SL RFK V KSW ++I P F A +
Sbjct: 157 SIESLNLSSILPHDLIVQILLRLPVRSLLRFKSVCKSWLSLISDPQFGKSHFDLAAAPTH 336
Query: 68 RLLILQNAPNMKFIFCDGGNDQKSIPIKSLFPQD---VARIEIYGSCDGVFCLKGISSCI 124
R L+ N ++ + D +S + FP + I+I GSC G L
Sbjct: 337 RCLVKINNFKLESLDVDASVLDQSSEVNLKFPYTGYVIFHIQILGSCRGFIAL------- 495
Query: 125 TRHDQLILWNPT 136
R I+WNP+
Sbjct: 496 VRGGDAIVWNPS 531
>BI419994
Length = 549
Score = 55.1 bits (131), Expect = 2e-08
Identities = 52/170 (30%), Positives = 71/170 (41%), Gaps = 24/170 (14%)
Frame = +2
Query: 26 LGEELEIEILLRLPTKSLSRFKCVQKSWNNIIKSPYF-------ATRRNRLLILQNAPNM 78
L +EL ++ILLRLP +SL RFK V KSW +I P F A + L N
Sbjct: 47 LPDELILQILLRLPVRSLLRFKTVCKSWRYLISDPQFTKSHFNLAASPTHRIFLNNTNGF 226
Query: 79 KFIFCDGG---NDQKSI-----------PIKSLFPQDVARIEIYGSCDGVFCLKGISSCI 124
D +D+ S+ P F V +++ GSC G L
Sbjct: 227 *IESLDTDSSLHDESSLVHLKFPLAPPHPDNHRFGSSVTGLKVLGSCRGFVLL------A 388
Query: 125 TRHDQLILWNPTTKEVHLIPRAPS-LGNHYSDESLYGFG--AVNDDFKVV 171
+++WNP+T +P S L + E LYG G NDD+ VV
Sbjct: 389 NHQGNVVVWNPSTGVRRRVPEWCSYLASQC--EFLYGIGYDESNDDYLVV 532
>BG662160
Length = 445
Score = 54.3 bits (129), Expect = 3e-08
Identities = 46/142 (32%), Positives = 69/142 (48%), Gaps = 6/142 (4%)
Frame = +2
Query: 26 LGEELEIEILLRLPTKSLSRFKCVQKSWNNIIK-SPYFATRRNRLLILQNAPNMKFIFCD 84
L EEL +EIL LP KSL RF+CV KSW +II S + +R + ++
Sbjct: 23 LPEELRLEILSWLPVKSLVRFRCVSKSWKSIISDSQFIKLHLHRSSSTTRNTDFAYLQSL 202
Query: 85 GGNDQKSIPIKSL-FPQDVARIEIYGSCDGVFCLKGISSCITRHDQ----LILWNPTTKE 139
+ +KS ++ P D + G+C+G+ CL SS R D+ + LWNP +
Sbjct: 203 ITSPRKSRSASTIAIPDD---YDFCGTCNGLVCLH--SSKYDRKDKYTSHVRLWNPAMRS 367
Query: 140 VHLIPRAPSLGNHYSDESLYGF 161
+ R+P L +S +GF
Sbjct: 368 --MSQRSPPLYLPIVYDSYFGF 427
>BP051299
Length = 539
Score = 53.9 bits (128), Expect = 4e-08
Identities = 48/185 (25%), Positives = 86/185 (45%), Gaps = 13/185 (7%)
Frame = +2
Query: 26 LGEELEIEILLRLPTKSLSRFKCVQKSWNNIIKSPYF-ATRRNR---LLILQNAPNM--- 78
L +E+ EIL RLP K+L + V KSW ++I S F + RN L+LQ
Sbjct: 5 LPQEIWAEILHRLPPKTLVKCTSVCKSWRSLITSTSFISLHRNHSPSSLLLQLCDERAIP 184
Query: 79 KFIFCDGGND------QKSIPIKSLFPQDVARIEIYGSCDGVFCLKGISSCITRHDQLIL 132
FI D S+ + S F ++ + G C G+ C+ +C LI+
Sbjct: 185 NFIHYSLRRDDPFLSESSSLRLPSSFNRE---FSVVGICHGLVCITSTENC----RDLII 343
Query: 133 WNPTTKEVHLIPRAPSLGNHYSDESLYGFGAVNDDFKVVKLNISNSNRMAKINSLLKADI 192
NP+ + +P + +S +GF + N+D+KV+++ + + ++S + ++
Sbjct: 344 CNPSLRLHITLPEPSDYPSLHSASVAFGFDSRNNDYKVIRIACMHDDERYGVSS-PEVEV 520
Query: 193 YDLST 197
Y L++
Sbjct: 521 YSLAS 535
>AI967453
Length = 456
Score = 48.9 bits (115), Expect = 1e-06
Identities = 43/144 (29%), Positives = 64/144 (43%), Gaps = 7/144 (4%)
Frame = +1
Query: 25 KLGEELEIEILLRLPTKSLSRFKCVQKSWNNIIKSPYFATRRNRLLILQNAPNMKFIFCD 84
+ G L EILLRLP KSL RFK V K W ++I P+FAT + A I D
Sbjct: 1 EFGTSLITEILLRLPVKSLVRFKAVCKFWRSLISDPHFATSH-----FERAAPRLLIRTD 165
Query: 85 GGNDQKSIPIKSLFPQDVARIEIYGSCDGVFCLKGI-------SSCITRHDQLILWNPTT 137
G + +SL P ++ + Y D + + I ++ + L +WNP+T
Sbjct: 166 HGIRTMDLE-ESLHPDRISELIDY---DFPYTVPYIVVRVELSANWL*SSRSLSIWNPST 333
Query: 138 KEVHLIPRAPSLGNHYSDESLYGF 161
H+ P N Y + +Y +
Sbjct: 334 ---HVHKPLPVDANAYEYDHMYPY 396
>TC14800 weakly similar to UP|Q9FHP3 (Q9FHP3) Genomic DNA, chromosome 5, TAC
clone:K14B20, partial (7%)
Length = 782
Score = 48.5 bits (114), Expect = 2e-06
Identities = 64/254 (25%), Positives = 100/254 (39%), Gaps = 28/254 (11%)
Frame = +3
Query: 26 LGEELEIEILLRLPTKSLSRFKCVQKSWNNIIKSPYFATRRNRLLILQNAPNMKF----- 80
L +EL IEIL LP KSL +F+ V K+W + I P F + LL + N F
Sbjct: 48 LPDELIIEILSWLPVKSLLQFRVVSKTWKSFISDPQFV--KLHLLHRLSFRNADFEHTSL 221
Query: 81 -IFC---DGGNDQ-KSIPIKSLFPQDVARI---------EIYGSCDGVFCLKGIS---SC 123
I C D G S + SL A + + G+C+G+ L+ ++ S
Sbjct: 222 LIKCHTDDFGRPYISSRTVSSLLESPSAIVASRSCISGYDFIGTCNGLVSLRKLNYDESN 401
Query: 124 ITRHDQLILWNPTTKEV------HLIPRAPSLGNHYSDESLYGFGAVNDDFKVVKLNISN 177
Q+ WNP T+ + PR LG +G+ +D +KVV +
Sbjct: 402 TNNFSQVRFWNPATRTMSQDSPPSWSPRNLHLG--------FGYDCSSDTYKVVGM---- 545
Query: 178 SNRMAKINSLLKADIYDLSTKSWTPLVSHPPITMVTRIQPSRYNTLVNGVYYWITSSDGS 237
I L ++Y++ W + P M +Q S V+ W+ G+
Sbjct: 546 ------IPGLTMVNVYNMGDNCWRTIQISPHAPM--HLQGSA--VYVSNTLNWLA---GT 686
Query: 238 DAARILCFDFRDNQ 251
+ I+ FD +
Sbjct: 687 NPYFIVSFDLEKEE 728
>AV427033
Length = 420
Score = 46.6 bits (109), Expect = 7e-06
Identities = 22/44 (50%), Positives = 29/44 (65%)
Frame = +1
Query: 20 SIERMKLGEELEIEILLRLPTKSLSRFKCVQKSWNNIIKSPYFA 63
S+ L +L +EIL RLP SL +F+CV KSWN++I P FA
Sbjct: 106 SLHAPPLPFDLVVEILCRLPVNSLLQFRCVCKSWNSLISDPKFA 237
>AW720409
Length = 575
Score = 46.6 bits (109), Expect = 7e-06
Identities = 48/165 (29%), Positives = 69/165 (41%), Gaps = 37/165 (22%)
Frame = +3
Query: 11 FSRLRKTKLSIERMKLGEELEIEILLRLPTKSLSRFKCVQKSWNNIIKSPYFATRRNRLL 70
FS L ++ + IE + L EL IEIL LP K+L RF CV KSW ++I + R + L
Sbjct: 51 FSCLLQSDMEIEFV-LPFELWIEILSWLPVKTLMRFSCVSKSWKSLI----YQDRDFKKL 215
Query: 71 ILQNAPNMKFIFCDGGNDQKSIPI-------KSLFPQDVARI------------------ 105
L +P N+Q + + ++ FP V R+
Sbjct: 216 HLDRSPK--------NNNQVILTLQKPLFSGRTFFPFPVRRLLQDQEPSSSSIIDDIPFE 371
Query: 106 -----------EIYGSCDGVFCLKGISSCITRHDQLI-LWNPTTK 138
+ GSC+G+ CL GI+ H LWNP T+
Sbjct: 372 EEDEDEEDNYHDTIGSCNGLVCLYGIND----HGLWFRLWNPATR 494
>AV768207
Length = 374
Score = 46.2 bits (108), Expect = 9e-06
Identities = 30/81 (37%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
Frame = +1
Query: 29 ELEIEILLRLPTKSLSRFKCVQKSWNNIIKSPYFA-----------TRRNRLLILQNAPN 77
EL +EIL RLP KSL + +CV KSW ++I P FA TR L P
Sbjct: 82 ELGVEILCRLPVKSLLQLRCVCKSWKSLISDPKFAKNHLRCSSTDFTRHRLFLSYNTLPG 261
Query: 78 MKFIFCDGGNDQKSIPIKSLF 98
+F F K P+ S+F
Sbjct: 262 DRFKFL-----LKDYPLLSVF 309
>AV423520
Length = 468
Score = 45.8 bits (107), Expect = 1e-05
Identities = 23/41 (56%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Frame = +3
Query: 29 ELEIEILLRLPTKSLSRFKCVQKSWNNIIK-SPYFATRRNR 68
EL +EIL RLP KSL +F+CV KSWN++I P FA + R
Sbjct: 174 ELVVEILCRLPVKSLLQFRCVCKSWNSLISGDPKFARKHLR 296
>AV413010
Length = 416
Score = 45.8 bits (107), Expect = 1e-05
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 20/106 (18%)
Frame = +3
Query: 26 LGEELEIEILLRLPTKSLSRFKCVQKSWNNIIKSPYFATRRNRL---------------- 69
L +EL I+ILL+LP SL RFK V KSW + I +P FA L
Sbjct: 96 LPDELIIQILLQLPVTSLLRFKSVSKSWFSQISNPQFAKSHFNLAASPTHYLFLKSTDEF 275
Query: 70 ----LILQNAPNMKFIFCDGGNDQKSIPIKSLFPQDVARIEIYGSC 111
L ++++P + ++Q S+F + +E+ GSC
Sbjct: 276 QFQTLDIESSPPFTTAVLNYPHEQPRSGSNSIFCPSITDLEVLGSC 413
>BP076687
Length = 389
Score = 45.1 bits (105), Expect = 2e-05
Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 13/125 (10%)
Frame = -3
Query: 26 LGEELEIEILLRLPTKSLSRFKCVQKSWNNIIKSPYF--------ATRRNRLLILQNAPN 77
L EEL +ILLRLP +SL RFK V KSW ++I P F A+ R L + N
Sbjct: 381 LPEELIPQILLRLPVRSLLRFKSVCKSWLSLISDPKFGKSHYDLAASPTYRCLTIANDSE 202
Query: 78 MKFIFCDGG--NDQKSIPIKSLFP-QDVARIEIYGSCDGVFC--LKGISSCITRHDQLIL 132
+ I D N + S+ +K +P ++ ++ F +G + + L
Sbjct: 201 IGSIDVDAPLLNYESSV-VKLKYPLPPPCKLSLFSGNTVWFLGYCRGFVIVVYEQGDVFL 25
Query: 133 WNPTT 137
WNP+T
Sbjct: 24 WNPST 10
>AV424374
Length = 429
Score = 44.7 bits (104), Expect = 3e-05
Identities = 36/127 (28%), Positives = 54/127 (42%), Gaps = 16/127 (12%)
Frame = +2
Query: 34 ILLRLPTKSLSRFKCVQKSWNNIIKSPYFAT----------RRNRLLILQNAPNMKFIFC 83
IL RLP K L + K V KSW N+I PYFAT + L + P + +
Sbjct: 8 ILSRLPAKDLVKCKSVCKSWFNLISDPYFATNYYAFYNNLKHQQEPLFVIRRPFLSSLKT 187
Query: 84 DGGNDQKSIPIKSLFPQDVAR------IEIYGSCDGVFCLKGISSCITRHDQLILWNPTT 137
S+ + L P EI G C+G++ LKG + +L NP+
Sbjct: 188 CISLLSSSVSSELLNPPSEYNSDRQYWTEIMGPCNGIYYLKGSPN--------VLMNPSL 343
Query: 138 KEVHLIP 144
+++ +P
Sbjct: 344 RQLKALP 364
>AV414925
Length = 414
Score = 43.5 bits (101), Expect = 6e-05
Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 17/113 (15%)
Frame = +1
Query: 26 LGEELEIE----ILLRLPTKSLSRFKCVQKSWNNIIKSPYFATRRNRLLILQNAPNMKFI 81
+ EE+ +E IL RLP SL RF+ + KSW ++I S +F + PN+ +
Sbjct: 85 MAEEIPVEVIADILSRLPVTSLLRFRSISKSWRSLIDSKHFMKLHLNNSLTNPNPNLTNL 264
Query: 82 FCDGGNDQKSIPIKSLFPQDVA-------------RIEIYGSCDGVFCLKGIS 121
D ++ FP A RI I GSC G+ C+ ++
Sbjct: 265 ILRHNTDL----YRADFPSIGAAVNLNHPLMCYSNRINILGSCHGLLCICNVA 411
>BP035281
Length = 498
Score = 42.4 bits (98), Expect = 1e-04
Identities = 40/110 (36%), Positives = 51/110 (46%), Gaps = 21/110 (19%)
Frame = +2
Query: 29 ELEIEILLRLPTKSLSRFKCVQKSWNNIIK-SPYFA---TRRNRLLI---LQNAPNMKFI 81
EL IEIL LP SL RFKCV KSW ++I + FA R L I + + + FI
Sbjct: 131 ELVIEILSWLPVLSLIRFKCVCKSWKSLISHNKAFAKLQLERTSLKINHVILTSSDSSFI 310
Query: 82 FCDGGNDQKSIP-----IKSLFPQDVARI---------EIYGSCDGVFCL 117
C S+P S+ QD R E+ GSC+G+ CL
Sbjct: 311 PC-------SLPRLLEDPSSIMDQDQDRCLRLDKFEYNEVIGSCNGLICL 439
>TC18730 similar to UP|Q963J2 (Q963J2) Voltage-dependent calcium channel
alpha13 subunit (Fragment), partial (5%)
Length = 515
Score = 41.6 bits (96), Expect = 2e-04
Identities = 20/35 (57%), Positives = 25/35 (71%)
Frame = +2
Query: 28 EELEIEILLRLPTKSLSRFKCVQKSWNNIIKSPYF 62
+EL + ILLRLP +SL RFK V KSW ++I P F
Sbjct: 227 KELILHILLRLPVRSLLRFKSVCKSWLSLISDPKF 331
>TC8398 weakly similar to UP|Q84KK1 (Q84KK1) S haplotype-specific F-box
protein a, partial (9%)
Length = 1602
Score = 40.0 bits (92), Expect = 6e-04
Identities = 20/35 (57%), Positives = 23/35 (65%)
Frame = +3
Query: 28 EELEIEILLRLPTKSLSRFKCVQKSWNNIIKSPYF 62
+EL EIL LP KSL RF+CV KSW I +P F
Sbjct: 84 DELIWEILSLLPVKSLVRFRCVCKSWKLTISNPQF 188
>TC14802 weakly similar to UP|CAD56661 (CAD56661) S locus F-box (SLF)-S4
protein, partial (10%)
Length = 551
Score = 39.7 bits (91), Expect = 8e-04
Identities = 50/192 (26%), Positives = 73/192 (37%), Gaps = 6/192 (3%)
Frame = +3
Query: 26 LGEELEIEILLRLPTKSLSRFKCVQKSWNNIIKSPYFATRRNRLLILQNAPNMKFIFCDG 85
L +EL IEIL LP KSL +F+ V K+W + I P F +L +L + F +
Sbjct: 21 LPDELIIEILSWLPVKSLLQFRVVSKTWKSFISDPQFV----KLHLLH-----RLSFRNA 173
Query: 86 GNDQKSIPIKSLFPQDVARIEIYGSCDGVFCLKGISSCITRHDQLILWNPTTKEV----- 140
+ S+ IK D R ISS R WNP T+ +
Sbjct: 174 DFEHTSLLIK-CHTDDFGR-------------PYISSRTVR-----FWNPATRTMSQDSP 296
Query: 141 -HLIPRAPSLGNHYSDESLYGFGAVNDDFKVVKLNISNSNRMAKINSLLKADIYDLSTKS 199
PR LG +G+ +D +KVV + I L ++Y++
Sbjct: 297 PSWSPRNLHLG--------FGYDCSSDTYKVVGM----------IPGLTMVNVYNMGDNC 422
Query: 200 WTPLVSHPPITM 211
W + P M
Sbjct: 423 WRTIQISPHAPM 458
>TC17551 weakly similar to UP|AAR24662 (AAR24662) At5g26960, partial (22%)
Length = 505
Score = 32.7 bits (73), Expect = 0.10
Identities = 14/50 (28%), Positives = 30/50 (60%)
Frame = +2
Query: 26 LGEELEIEILLRLPTKSLSRFKCVQKSWNNIIKSPYFATRRNRLLILQNA 75
L +++ ++ L R+P SL V + W++++ SP F+ R R +L+++
Sbjct: 137 LPDDIILDFLTRVPPSSLPSLSLVCRRWSHLLHSPDFSDLRRRRHLLRHS 286
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.324 0.140 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,870,779
Number of Sequences: 28460
Number of extensions: 121613
Number of successful extensions: 539
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of query: 373
length of database: 4,897,600
effective HSP length: 92
effective length of query: 281
effective length of database: 2,279,280
effective search space: 640477680
effective search space used: 640477680
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)
Medicago: description of AC135160.10