TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135101.6 + phase: 0 /pseudo
         (1281 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC8301                                                                 38  0.012
BP054819                                                               34  0.17
BP066538                                                               30  2.4
TC9992                                                                 28  7.0
TC19174                                                                28  7.0
TC13229 weakly similar to UP|O81642 (O81642) IAA-ALA hydrolase (...    28  9.2

>TC8301 
          Length = 1243

 Score = 37.7 bits (86), Expect = 0.012
 Identities = 29/97 (29%), Positives = 42/97 (42%)
 Frame = +2

Query: 2   SKVAPPLFDGNNYELWAVKIEAYLEALDVWEAIEEDYEVPPLPNNPTMAQLKYHKERKTK 61
           +K   P F G+N+ LW +KI+A L          +D  +P +   P        KE    
Sbjct: 506 AKFEIPKFSGSNFSLWKLKIKAIL---------RKDNCLPAIDGRPADITDDKWKEMDD- 655

Query: 62  KAKAKSCLFAGVLETVFTRIMTLKTPKAIWDYLKEEY 98
              A + L   V ++V + I   KT K IWD L + Y
Sbjct: 656 --NAVANLHLAVADSVLSSIAEKKTAKEIWDTLIQLY 760


>BP054819 
          Length = 537

 Score = 33.9 bits (76), Expect = 0.17
 Identities = 14/38 (36%), Positives = 26/38 (67%), Gaps = 2/38 (5%)
 Frame = -3

Query: 6   PPLFDGNNYELWAVKIEAYLEALD--VWEAIEEDYEVP 41
           PP+ DG NY+   V++ A+L+++D   W+AI + ++ P
Sbjct: 280 PPILDGTNYDY*KVRMTAFLKSIDNKTWKAIVKGWKHP 167


>BP066538 
          Length = 396

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 19/48 (39%), Positives = 30/48 (61%), Gaps = 1/48 (2%)
 Frame = -3

Query: 274 VKQKSNKLQLKQK-MYSKRRKTISLLQHVFPAAVHVNLG*LIVDALIT 320
           +++  + L L+ K + +KRR + +L Q V P  + V +G*L VDA IT
Sbjct: 373 IERAKSYLNLRLKWVINKRRWSTNLQQLVLPPIITVKIG*LRVDAHIT 230


>TC9992 
          Length = 508

 Score = 28.5 bits (62), Expect = 7.0
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +1

Query: 1209 LLIIKQLFPYHIIQYFMGRPSTLMSSYFT*EK 1240
            LLIIK L+PY  I  F  RP+   SS+   EK
Sbjct: 142  LLIIKLLYPYPPIPCFRERPTLPRSSFIFLEK 237


>TC19174 
          Length = 601

 Score = 28.5 bits (62), Expect = 7.0
 Identities = 15/43 (34%), Positives = 26/43 (59%)
 Frame = +2

Query: 200 KIVLLKVLYQPRANNHTL*RVIQQVVNTTKERVRRKVFHLVNT 242
           K++L    +QP+  +H + R++QQV  T +ER RR     ++T
Sbjct: 41  KLLLQPEAWQPKMEHH*IRRIVQQVC-TEEERARRHQHQKLST 166


>TC13229 weakly similar to UP|O81642 (O81642) IAA-ALA hydrolase (IAR3)
           (AT1G51760/F19C24_4), partial (23%)
          Length = 558

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 12/28 (42%), Positives = 16/28 (56%)
 Frame = +2

Query: 867 SGYYLPLLHKKGGECFIWTLSRLSLTVF 894
           + Y   LLH   GECF WT    +L++F
Sbjct: 254 TSYSRILLHAWNGECFYWTF*VTTLSIF 337


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.361    0.159    0.550 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,194,225
Number of Sequences: 28460
Number of extensions: 305352
Number of successful extensions: 3258
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2417
Number of HSP's successfully gapped in prelim test: 81
Number of HSP's that attempted gapping in prelim test: 790
Number of HSP's gapped (non-prelim): 2585
length of query: 1281
length of database: 4,897,600
effective HSP length: 101
effective length of query: 1180
effective length of database: 2,023,140
effective search space: 2387305200
effective search space used: 2387305200
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.9 bits)
S2: 61 (28.1 bits)