BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135101.10 + phase: 0 /pseudo
(1477 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP053507 60 3e-09
TC10331 similar to UP|Q8GZT8 (Q8GZT8) PTEN-like protein, partial... 30 2.1
TC10758 24 4.0
AV768149 29 4.7
TC19458 weakly similar to UP|Q9STE8 (Q9STE8) Chloroplast import-... 29 4.7
BI418759 29 6.2
TC15279 weakly similar to UP|Q93YZ5 (Q93YZ5) AT5g51550/K17N15_10... 29 6.2
TC12508 similar to GB|AAM51574.1|21435993|AY116940 AT3g56680/T8M... 28 8.1
BP043571 28 8.1
TC14691 28 8.1
TC13431 28 8.1
>BP053507
Length = 513
Score = 60.1 bits (144), Expect = 3e-09
Identities = 32/46 (69%), Positives = 36/46 (77%)
Frame = -3
Query: 1432 DEQLDGLLHEESWLESRMKVLIEACEGNSSLLIQVKKLKDAAEKNS 1477
DEQL E +WLE+R+KVL EACEGNSSLL QV KLK AAEK+S
Sbjct: 508 DEQL-----ENTWLEARLKVLTEACEGNSSLLTQVNKLKAAAEKSS 386
>TC10331 similar to UP|Q8GZT8 (Q8GZT8) PTEN-like protein, partial (7%)
Length = 605
Score = 30.4 bits (67), Expect = 2.1
Identities = 20/86 (23%), Positives = 38/86 (43%), Gaps = 1/86 (1%)
Frame = +3
Query: 110 NSATSMELDTSNKDDKKEVFAAERDKIFSDRMTDHSSTSEKNYFMHEQESTSLEN-EIDS 168
NS +E+ + + KE AE+D +FSD +H ++S + + ++ N +
Sbjct: 9 NSPAPVEVSPAAPNASKESEGAEKDDVFSDGEAEHPASSRSKHTQASEAVATVTNAPREC 188
Query: 169 ENRARIQQMSTEEIEEAKADIMEKIS 194
E+ Q+S + + KIS
Sbjct: 189 ESNPNSDQVSNLTRATEQVSLGNKIS 266
>TC10758
Length = 532
Score = 23.9 bits (50), Expect(2) = 4.0
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -2
Query: 946 GMGVGWGAHGGGFW 959
G G GWG G G+W
Sbjct: 174 GEGDGWGCDGVGWW 133
Score = 23.9 bits (50), Expect(2) = 4.0
Identities = 11/24 (45%), Positives = 15/24 (61%)
Frame = -1
Query: 927 SGWQRMQSIEIFGRGGPAPGMGVG 950
SGW R++ + R G APG+G G
Sbjct: 280 SGWSRVRRGDGGRRIGEAPGVGPG 209
>AV768149
Length = 454
Score = 29.3 bits (64), Expect = 4.7
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 362 TENMTKKGNKVDKSVDWEAVWTYALGPQPELALSLRM*LD 401
T+N N + KS+ +WT L P+ L + ++ *LD
Sbjct: 44 TQNRDSSRNLLHKSIAVTTIWTQILNPKKRLIIRIKP*LD 163
>TC19458 weakly similar to UP|Q9STE8 (Q9STE8) Chloroplast import-associated
channel homolog (AT3g46740/T6H20_230), partial (10%)
Length = 469
Score = 29.3 bits (64), Expect = 4.7
Identities = 13/32 (40%), Positives = 16/32 (49%)
Frame = +3
Query: 939 GRGGPAPGMGVGWGAHGGGFWSKTVLPVKTDA 970
G GG G G G GGFWS+ + P +A
Sbjct: 243 GGGGGGGWFGGGGGDGNGGFWSRLLTPAAANA 338
>BI418759
Length = 543
Score = 28.9 bits (63), Expect = 6.2
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = -3
Query: 610 LPLSIDDWLKLGKEKCKLKSALTIEQLRFWRVCIRYGYCVSHFSKIFPALCFW 662
LP S +++L + K + +E +R + + IR+G + H K P+LCF+
Sbjct: 310 LPKSCQCFMELAQIKALINHY--VEGIRVYSLKIRWGVVI*HLIKQSPSLCFF 158
>TC15279 weakly similar to UP|Q93YZ5 (Q93YZ5) AT5g51550/K17N15_10, partial
(28%)
Length = 464
Score = 28.9 bits (63), Expect = 6.2
Identities = 17/48 (35%), Positives = 24/48 (49%)
Frame = -3
Query: 1126 WARQNLPLPVHFYLSPISTIPLTKRAGPQKVGSVHNPHDPANLLEVAK 1173
W R +LP + + T+ L R GP S+ N DP+N LE +K
Sbjct: 324 WLRSHLPYQI------VWTVILEVRTGPIW*RSLTNSDDPSNFLESSK 199
>TC12508 similar to GB|AAM51574.1|21435993|AY116940 AT3g56680/T8M16_10
{Arabidopsis thaliana;}, partial (5%)
Length = 811
Score = 28.5 bits (62), Expect = 8.1
Identities = 19/64 (29%), Positives = 32/64 (49%), Gaps = 1/64 (1%)
Frame = +2
Query: 109 INSATSMELDTSNKDDKKEVFAAERDKIFSDRMTDHSSTSEKNYFMHE-QESTSLENEID 167
I A + T N++D V + +DK+ +D + TSEK+ M + +ES L +
Sbjct: 599 IAHALGQRIHTRNQNDL--VSDSMKDKVLTDELNGQDKTSEKSNLMKDSEESLHLRRNSN 772
Query: 168 SENR 171
S+ R
Sbjct: 773 SKIR 784
>BP043571
Length = 438
Score = 28.5 bits (62), Expect = 8.1
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +2
Query: 641 VCIRYGYCVSHFSKIFPALCFWLDLPSFEKLTKNN 675
+ I Y SHF K+ LC+W + + K +N
Sbjct: 245 LAITASYVTSHFLKVLCFLCYWCNEQDYTKTVASN 349
>TC14691
Length = 1255
Score = 28.5 bits (62), Expect = 8.1
Identities = 17/61 (27%), Positives = 30/61 (48%)
Frame = +2
Query: 1140 SPISTIPLTKRAGPQKVGSVHNPHDPANLLEVAKCGLFFVLGIETMSSFIGTGIPSPIQR 1199
SP S+I + G + V P +L A+ L F+L + +G+G+PS +++
Sbjct: 743 SPFSSIEVWAWTGVLLISFVSALFYPTSLGTSARTCLPFLLAATVLGYMVGSGLPSNVKK 922
Query: 1200 V 1200
V
Sbjct: 923 V 925
>TC13431
Length = 552
Score = 28.5 bits (62), Expect = 8.1
Identities = 11/32 (34%), Positives = 17/32 (52%)
Frame = +3
Query: 820 WHLGFSVASVTKSGRDSGDESFMKELIHLRQK 851
WH G + KSGR G+E K+ + L ++
Sbjct: 60 WHAGMNCEEFQKSGRVKGEEDLEKKFLKLAKR 155
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.318 0.134 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,624,267
Number of Sequences: 28460
Number of extensions: 356459
Number of successful extensions: 1889
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1887
length of query: 1477
length of database: 4,897,600
effective HSP length: 102
effective length of query: 1375
effective length of database: 1,994,680
effective search space: 2742685000
effective search space used: 2742685000
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Medicago: description of AC135101.10