Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135100.7 + phase: 0 /pseudo
         (855 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC18710                                                               151  5e-37
TC18198 weakly similar to UP|Q9XGZ5 (Q9XGZ5) T1N24.20 protein, p...    98  5e-21
AV780705                                                               84  1e-16
BP085058                                                               78  7e-15
AV767121                                                               75  3e-14
TC18742 similar to UP|Q9FZG5 (Q9FZG5) T2E6.4, partial (3%)             51  9e-07
AV780221                                                               46  3e-05
BP060613                                                               44  8e-05
TC19704 weakly similar to UP|Q9SZ87 (Q9SZ87) RNA-directed DNA po...    35  0.066
TC15332 similar to UP|PPA1_LYCES (P27061) Acid phosphatase precu...    32  0.56
TC12829                                                                31  0.73
TC10831 similar to UP|Q7X9B2 (Q7X9B2) 9/13 hydroperoxide lyase, ...    30  2.1
TC11679 similar to UP|Q8I738 (Q8I738) TcC31.4, partial (8%)            29  3.6
BP074705                                                               28  6.1
BP054632                                                               28  8.0

>TC18710 
          Length = 843

 Score =  151 bits (381), Expect = 5e-37
 Identities = 90/265 (33%), Positives = 143/265 (53%), Gaps = 1/265 (0%)
 Frame = +2

Query: 330 FYQNLFQKDRTVNPHSLRVPLIPTLCALGIRSLSSPVLKEEVKDALFSMQSDKAPGPDGF 389
           F+  L+      +  S  +  +P    + I+SL+   L+++++   F +++ +  G DG 
Sbjct: 23  FFPELYTSTPPNSSESA*MLFLP*SLKI*IKSLNLR*LQKKLRLLFFLLETSQPRGMDGM 202

Query: 390 QPLFFKHFWEKTGESLWELVDISFRRGFIDEAIVETLLVLIPKENNPTHLKNFRPISLCN 449
             LF++   +   +S+   +     R  I   I ETL+ LIPK  +P  +  FRPIS C 
Sbjct: 203 NGLFYQKNGDVVKDSVT*AILAFLERAEIPNEINETLVTLIPKVPHPESINQFRPISGCT 382

Query: 450 VIFKVITKVLVNRIRPFLDELVSPFQSNFIPRRGTTDNAIIAQEVVHYMHTSRS-QKGTL 508
            ++KVI+K+ V R++  + +L+SP QS FI  R   DN +I QE  H ++   +  +   
Sbjct: 383 FLYKVISKIFVARLKDAMPDLISPMQSGFIQGRQIQDNLLIVQEAFHAINRPGALGRNHS 562

Query: 509 ALKIYLEKAYDRLDWSFLELTLHDFGFPHHIIGLIMSCVKASDLAILWNGAKTNKFKPTK 568
            +K+ + KAYDR++W FLE +L  FGF  + + +IM  V         NG    K  P +
Sbjct: 563 IIKLDMNKAYDRVEWKFLESSLLAFGFSTNWVKMIMILVSGVSYNYKINGVVGPKLLPQR 742

Query: 569 GLRQGDPLSPYLFVLCMEKLAMHIQ 593
           GLRQGDP SPYLF+  ME L++ IQ
Sbjct: 743 GLRQGDPFSPYLFLFTMEVLSLLIQ 817


>TC18198 weakly similar to UP|Q9XGZ5 (Q9XGZ5) T1N24.20 protein, partial
           (14%)
          Length = 592

 Score = 98.2 bits (243), Expect = 5e-21
 Identities = 56/182 (30%), Positives = 94/182 (50%)
 Frame = -3

Query: 292 FFHTQTIVRRKHNKIHGLHLDDGTWCTYDTQLQKTAISFYQNLFQKDRTVNPHSLRVPLI 351
           FFH  TI RR  N+I  +    G W     ++ + A++++ +++             P+ 
Sbjct: 551 FFHASTIQRRDFNRILKIKDAHGIWVEGQKKVNEAAVNYFSDIYSSSPLQYLRECLAPIP 372

Query: 352 PTLCALGIRSLSSPVLKEEVKDALFSMQSDKAPGPDGFQPLFFKHFWEKTGESLWELVDI 411
             +       L + V  +E+K+A+FSM   KAPG DG   LF++   E     +   +  
Sbjct: 371 KLVTDRLNHKLCAQVSTDEIKEAVFSMGDLKAPGMDGINGLFYQQNREIVKNDVNNAILD 192

Query: 412 SFRRGFIDEAIVETLLVLIPKENNPTHLKNFRPISLCNVIFKVITKVLVNRIRPFLDELV 471
            F  G +   + ETL+ LIPK  +   ++ FRPIS C+ I+KVI+K++V R++P +  L+
Sbjct: 191 FFDHGELPVELNETLVTLIPKIPHAEAIQQFRPISCCSFIYKVISKIIVARLKPDMVNLI 12

Query: 472 SP 473
           SP
Sbjct: 11  SP 6


>AV780705 
          Length = 524

 Score = 83.6 bits (205), Expect = 1e-16
 Identities = 46/143 (32%), Positives = 72/143 (50%), Gaps = 5/143 (3%)
 Frame = -2

Query: 685 GHYLGFPLVQGRVTNETYKHIIEKMHHRLASWKGKLLNKSGRVCLEKSVTTSMPVYSMQI 744
           GHYLG P + GR  + +   I EK+  +L  WK  LLN++G+  L K++  ++P Y+M I
Sbjct: 490 GHYLGLPAIWGRNKSHSLVWIEEKVKEKLEGWKETLLNQAGKEVLIKAIIQAIPSYAMTI 311

Query: 745 NLLRKELCDGIDKITKSFIWGGNGVT*KWNMVKWTTVTS-----PRKFGGLAIRDARNTN 799
               K  C+ +  +   F W   G       V++T          ++ GG+  RD R  N
Sbjct: 310 VHFPKTFCNSLYALVADFWWKSQGE----GAVEYTGAVGTK*PLSKEKGGVGFRDLRTQN 143

Query: 800 LALLGKLVWSLLHDKNKLWVRLL 822
           LA L +  W +L +   LWVR++
Sbjct: 142 LAFLARQAWRVLTNPEALWVRVM 74


>BP085058 
          Length = 452

 Score = 77.8 bits (190), Expect = 7e-15
 Identities = 42/117 (35%), Positives = 66/117 (55%), Gaps = 1/117 (0%)
 Frame = +2

Query: 675 ISSIRLVSNLGHYLGFPLVQGRVTNETYKHIIEKMHHRLASWKGKLLNKSGRVCLEKSVT 734
           I+SI    N+G Y+ FP+ QG V  E +   ++++  RLA  K  LLNK  R+ L K V 
Sbjct: 101 ITSIPFTDNIGKYMSFPIHQGHV*KEDFVFTLDRVISRLAC*KAYLLNKPARLTLAKPVL 280

Query: 735 TSMPVYSMQINLLRKELCDGIDKITKSFIWGG-NGVT*KWNMVKWTTVTSPRKFGGL 790
           +++ +Y MQ+N L + +CD I  + + F+W   NG+     +V W T+ S +   GL
Sbjct: 281 SAISMYVMQLNWLPQSICDQICTVVRHFVWENVNGIP----LVAWETIQSRKSMVGL 439


>AV767121 
          Length = 525

 Score = 75.5 bits (184), Expect = 3e-14
 Identities = 39/113 (34%), Positives = 64/113 (56%)
 Frame = +2

Query: 713 LASWKGKLLNKSGRVCLEKSVTTSMPVYSMQINLLRKELCDGIDKITKSFIWGGNGVT*K 772
           L+ WK K ++  GR+ L +SV T++P++ +    L   +     ++ ++F+WGG+    K
Sbjct: 2   LSKWKQKTVSFGGRIFLIQSVLTALPLFFLSFFKLPIGVGKSCVRLMRNFLWGGSENENK 181

Query: 773 WNMVKWTTVTSPRKFGGLAIRDARNTNLALLGKLVWSLLHDKNKLWVRLLSGK 825
              VKWT V  P++ GGL I+D    N ALLGK  W  L + + LW R++  +
Sbjct: 182 IA*VKWTDVCKPKELGGLGIKDLFTFNKALLGK*RWRYLTEPDSLWRRVIEAQ 340


>TC18742 similar to UP|Q9FZG5 (Q9FZG5) T2E6.4, partial (3%)
          Length = 912

 Score = 50.8 bits (120), Expect = 9e-07
 Identities = 34/125 (27%), Positives = 61/125 (48%)
 Frame = -3

Query: 613 LSHLTFADDVLLFCEANTQQVQMVIDTLNEFCSASGLKVNVTKSKSMCSKRVPERTKRDI 672
           +SHL FAD++++F     + + ++ + L+ F   SGL  N  KS+      V E TK  I
Sbjct: 373 ISHLCFADNLMVFSNGYLESIAIINNVLHIFQHLSGLTPNPAKSEVFI--LVKETTKNQI 200

Query: 673 QGISSIRLVSNLGHYLGFPLVQGRVTNETYKHIIEKMHHRLASWKGKLLNKSGRVCLEKS 732
             +   +        LG P +  ++     K ++++   +L  W G+ L+ +GR+ L  S
Sbjct: 199 TNMLGYKEGKLPVR*LGVPQLTTKLKASDCKVLVDRKPSKLQHWTGRSLSYAGRLQLINS 20

Query: 733 VTTSM 737
           +  SM
Sbjct: 19  ILFSM 5


>AV780221 
          Length = 461

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 20/47 (42%), Positives = 31/47 (65%)
 Frame = +3

Query: 776 VKWTTVTSPRKFGGLAIRDARNTNLALLGKLVWSLLHDKNKLWVRLL 822
           VKW+TV  P+  GGL +++    N ALLGK  W +L +++ LW ++L
Sbjct: 153 VKWSTVCRPKDEGGLGVQNLGLFNKALLGKWRWRMLKERDGLWYKVL 293


>BP060613 
          Length = 378

 Score = 44.3 bits (103), Expect = 8e-05
 Identities = 21/60 (35%), Positives = 32/60 (53%)
 Frame = +1

Query: 763 IWGGNGVT*KWNMVKWTTVTSPRKFGGLAIRDARNTNLALLGKLVWSLLHDKNKLWVRLL 822
           +W  +  T   +  KW  +T  +  GGL  +D    N ALL K  W +LH+ + LWV++L
Sbjct: 43  VWWSSKGTRGVHWRKWDLLTELKDEGGLGFKDFEIQNQALLAKQAWRILHNPDALWVQIL 222


>TC19704 weakly similar to UP|Q9SZ87 (Q9SZ87) RNA-directed DNA
           polymerase-like protein, partial (3%)
          Length = 530

 Score = 34.7 bits (78), Expect = 0.066
 Identities = 14/51 (27%), Positives = 24/51 (46%)
 Frame = -3

Query: 292 FFHTQTIVRRKHNKIHGLHLDDGTWCTYDTQLQKTAISFYQNLFQKDRTVN 342
           FFH  T+ RR+ N+I  +    GTW      + +    FY ++++     N
Sbjct: 204 FFHASTVQRRERNRIERIKDMQGTWVRSQLAINRDVPDFYPDIYKSTNRQN 52


>TC15332 similar to UP|PPA1_LYCES (P27061) Acid phosphatase precursor 1  ,
           partial (89%)
          Length = 1040

 Score = 31.6 bits (70), Expect = 0.56
 Identities = 12/38 (31%), Positives = 25/38 (65%)
 Frame = -2

Query: 439 LKNFRPISLCNVIFKVITKVLVNRIRPFLDELVSPFQS 476
           +KN +P+S+C++I K+  K L+N   P +  +++ F +
Sbjct: 508 VKNLQPVSMCSIIGKIREKRLINVENPRVFSIITKFNT 395


>TC12829 
          Length = 448

 Score = 31.2 bits (69), Expect = 0.73
 Identities = 16/44 (36%), Positives = 23/44 (51%)
 Frame = +3

Query: 719 KLLNKSGRVCLEKSVTTSMPVYSMQINLLRKELCDGIDKITKSF 762
           K L ++GR  L KSVT ++P Y M    L   +C  I+ +   F
Sbjct: 255 KFLYRAGREVLIKSVTKAIPTYIMSCFALPDSICSQIEGMVGKF 386


>TC10831 similar to UP|Q7X9B2 (Q7X9B2) 9/13 hydroperoxide lyase, partial
           (30%)
          Length = 565

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +3

Query: 640 LNEFCSASGLKVNVTKSKSMCSKRVPERTKRDIQGISSIR 679
           L  FC   GL+V V    SMC     +R +  ++GISS+R
Sbjct: 192 LRSFCRG-GLRVKVRSC*SMCCGATGKRRRSRLRGISSVR 308


>TC11679 similar to UP|Q8I738 (Q8I738) TcC31.4, partial (8%)
          Length = 652

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
 Frame = -3

Query: 391 PLFFKHFWEKTGESLWELVDISFRRGFIDEAIVETLLVLIPKENNPTHLKNF------RP 444
           PLF  HF + + ESL  L  ISF R  I   +    +V   + ++    +NF      +P
Sbjct: 368 PLFLPHFHK*SQESLTHLRCISFSRVII*RRVNHPSMVQFTRRSDHNRSRNFGISTRHKP 189

Query: 445 ISLCNV 450
           ++L  +
Sbjct: 188 VTLLTI 171


>BP074705 
          Length = 379

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 24/84 (28%), Positives = 39/84 (45%)
 Frame = -1

Query: 732 SVTTSMPVYSMQINLLRKELCDGIDKITKSFIWGGNGVT*KWNMVKWTTVTSPRKFGGLA 791
           +V TS+P+YSMQ   L + +     K +++      G    WN+V W          GLA
Sbjct: 292 AVLTSLPLYSMQALCLFESVLIMWIKFSQT----KGG*YKSWNLVVWDA-------RGLA 146

Query: 792 IRDARNTNLALLGKLVWSLLHDKN 815
              A++T +  L +L   + + KN
Sbjct: 145 QAKAKDTKVRALTRLKKKIYYVKN 74


>BP054632 
          Length = 514

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 16/56 (28%), Positives = 28/56 (49%)
 Frame = +3

Query: 597 EDRS*RPIHISKDGPGLSHLTFADDVLLFCEANTQQVQMVIDTLNEFCSASGLKVN 652
           +D   +P ++       SHLT  +D +   E   Q ++  I+ LNE  SA+  ++N
Sbjct: 264 QDAYKKPNYVQISVESYSHLTGLEDQVKTYEEKVQTLEDEINELNEKLSAANSEIN 431


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.345    0.152    0.514 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,361,689
Number of Sequences: 28460
Number of extensions: 216731
Number of successful extensions: 1875
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1870
length of query: 855
length of database: 4,897,600
effective HSP length: 98
effective length of query: 757
effective length of database: 2,108,520
effective search space: 1596149640
effective search space used: 1596149640
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.6 bits)
S2: 59 (27.3 bits)


Medicago: description of AC135100.7