
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135100.7 + phase: 0 /pseudo
(855 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC18710 151 5e-37
TC18198 weakly similar to UP|Q9XGZ5 (Q9XGZ5) T1N24.20 protein, p... 98 5e-21
AV780705 84 1e-16
BP085058 78 7e-15
AV767121 75 3e-14
TC18742 similar to UP|Q9FZG5 (Q9FZG5) T2E6.4, partial (3%) 51 9e-07
AV780221 46 3e-05
BP060613 44 8e-05
TC19704 weakly similar to UP|Q9SZ87 (Q9SZ87) RNA-directed DNA po... 35 0.066
TC15332 similar to UP|PPA1_LYCES (P27061) Acid phosphatase precu... 32 0.56
TC12829 31 0.73
TC10831 similar to UP|Q7X9B2 (Q7X9B2) 9/13 hydroperoxide lyase, ... 30 2.1
TC11679 similar to UP|Q8I738 (Q8I738) TcC31.4, partial (8%) 29 3.6
BP074705 28 6.1
BP054632 28 8.0
>TC18710
Length = 843
Score = 151 bits (381), Expect = 5e-37
Identities = 90/265 (33%), Positives = 143/265 (53%), Gaps = 1/265 (0%)
Frame = +2
Query: 330 FYQNLFQKDRTVNPHSLRVPLIPTLCALGIRSLSSPVLKEEVKDALFSMQSDKAPGPDGF 389
F+ L+ + S + +P + I+SL+ L+++++ F +++ + G DG
Sbjct: 23 FFPELYTSTPPNSSESA*MLFLP*SLKI*IKSLNLR*LQKKLRLLFFLLETSQPRGMDGM 202
Query: 390 QPLFFKHFWEKTGESLWELVDISFRRGFIDEAIVETLLVLIPKENNPTHLKNFRPISLCN 449
LF++ + +S+ + R I I ETL+ LIPK +P + FRPIS C
Sbjct: 203 NGLFYQKNGDVVKDSVT*AILAFLERAEIPNEINETLVTLIPKVPHPESINQFRPISGCT 382
Query: 450 VIFKVITKVLVNRIRPFLDELVSPFQSNFIPRRGTTDNAIIAQEVVHYMHTSRS-QKGTL 508
++KVI+K+ V R++ + +L+SP QS FI R DN +I QE H ++ + +
Sbjct: 383 FLYKVISKIFVARLKDAMPDLISPMQSGFIQGRQIQDNLLIVQEAFHAINRPGALGRNHS 562
Query: 509 ALKIYLEKAYDRLDWSFLELTLHDFGFPHHIIGLIMSCVKASDLAILWNGAKTNKFKPTK 568
+K+ + KAYDR++W FLE +L FGF + + +IM V NG K P +
Sbjct: 563 IIKLDMNKAYDRVEWKFLESSLLAFGFSTNWVKMIMILVSGVSYNYKINGVVGPKLLPQR 742
Query: 569 GLRQGDPLSPYLFVLCMEKLAMHIQ 593
GLRQGDP SPYLF+ ME L++ IQ
Sbjct: 743 GLRQGDPFSPYLFLFTMEVLSLLIQ 817
>TC18198 weakly similar to UP|Q9XGZ5 (Q9XGZ5) T1N24.20 protein, partial
(14%)
Length = 592
Score = 98.2 bits (243), Expect = 5e-21
Identities = 56/182 (30%), Positives = 94/182 (50%)
Frame = -3
Query: 292 FFHTQTIVRRKHNKIHGLHLDDGTWCTYDTQLQKTAISFYQNLFQKDRTVNPHSLRVPLI 351
FFH TI RR N+I + G W ++ + A++++ +++ P+
Sbjct: 551 FFHASTIQRRDFNRILKIKDAHGIWVEGQKKVNEAAVNYFSDIYSSSPLQYLRECLAPIP 372
Query: 352 PTLCALGIRSLSSPVLKEEVKDALFSMQSDKAPGPDGFQPLFFKHFWEKTGESLWELVDI 411
+ L + V +E+K+A+FSM KAPG DG LF++ E + +
Sbjct: 371 KLVTDRLNHKLCAQVSTDEIKEAVFSMGDLKAPGMDGINGLFYQQNREIVKNDVNNAILD 192
Query: 412 SFRRGFIDEAIVETLLVLIPKENNPTHLKNFRPISLCNVIFKVITKVLVNRIRPFLDELV 471
F G + + ETL+ LIPK + ++ FRPIS C+ I+KVI+K++V R++P + L+
Sbjct: 191 FFDHGELPVELNETLVTLIPKIPHAEAIQQFRPISCCSFIYKVISKIIVARLKPDMVNLI 12
Query: 472 SP 473
SP
Sbjct: 11 SP 6
>AV780705
Length = 524
Score = 83.6 bits (205), Expect = 1e-16
Identities = 46/143 (32%), Positives = 72/143 (50%), Gaps = 5/143 (3%)
Frame = -2
Query: 685 GHYLGFPLVQGRVTNETYKHIIEKMHHRLASWKGKLLNKSGRVCLEKSVTTSMPVYSMQI 744
GHYLG P + GR + + I EK+ +L WK LLN++G+ L K++ ++P Y+M I
Sbjct: 490 GHYLGLPAIWGRNKSHSLVWIEEKVKEKLEGWKETLLNQAGKEVLIKAIIQAIPSYAMTI 311
Query: 745 NLLRKELCDGIDKITKSFIWGGNGVT*KWNMVKWTTVTS-----PRKFGGLAIRDARNTN 799
K C+ + + F W G V++T ++ GG+ RD R N
Sbjct: 310 VHFPKTFCNSLYALVADFWWKSQGE----GAVEYTGAVGTK*PLSKEKGGVGFRDLRTQN 143
Query: 800 LALLGKLVWSLLHDKNKLWVRLL 822
LA L + W +L + LWVR++
Sbjct: 142 LAFLARQAWRVLTNPEALWVRVM 74
>BP085058
Length = 452
Score = 77.8 bits (190), Expect = 7e-15
Identities = 42/117 (35%), Positives = 66/117 (55%), Gaps = 1/117 (0%)
Frame = +2
Query: 675 ISSIRLVSNLGHYLGFPLVQGRVTNETYKHIIEKMHHRLASWKGKLLNKSGRVCLEKSVT 734
I+SI N+G Y+ FP+ QG V E + ++++ RLA K LLNK R+ L K V
Sbjct: 101 ITSIPFTDNIGKYMSFPIHQGHV*KEDFVFTLDRVISRLAC*KAYLLNKPARLTLAKPVL 280
Query: 735 TSMPVYSMQINLLRKELCDGIDKITKSFIWGG-NGVT*KWNMVKWTTVTSPRKFGGL 790
+++ +Y MQ+N L + +CD I + + F+W NG+ +V W T+ S + GL
Sbjct: 281 SAISMYVMQLNWLPQSICDQICTVVRHFVWENVNGIP----LVAWETIQSRKSMVGL 439
>AV767121
Length = 525
Score = 75.5 bits (184), Expect = 3e-14
Identities = 39/113 (34%), Positives = 64/113 (56%)
Frame = +2
Query: 713 LASWKGKLLNKSGRVCLEKSVTTSMPVYSMQINLLRKELCDGIDKITKSFIWGGNGVT*K 772
L+ WK K ++ GR+ L +SV T++P++ + L + ++ ++F+WGG+ K
Sbjct: 2 LSKWKQKTVSFGGRIFLIQSVLTALPLFFLSFFKLPIGVGKSCVRLMRNFLWGGSENENK 181
Query: 773 WNMVKWTTVTSPRKFGGLAIRDARNTNLALLGKLVWSLLHDKNKLWVRLLSGK 825
VKWT V P++ GGL I+D N ALLGK W L + + LW R++ +
Sbjct: 182 IA*VKWTDVCKPKELGGLGIKDLFTFNKALLGK*RWRYLTEPDSLWRRVIEAQ 340
>TC18742 similar to UP|Q9FZG5 (Q9FZG5) T2E6.4, partial (3%)
Length = 912
Score = 50.8 bits (120), Expect = 9e-07
Identities = 34/125 (27%), Positives = 61/125 (48%)
Frame = -3
Query: 613 LSHLTFADDVLLFCEANTQQVQMVIDTLNEFCSASGLKVNVTKSKSMCSKRVPERTKRDI 672
+SHL FAD++++F + + ++ + L+ F SGL N KS+ V E TK I
Sbjct: 373 ISHLCFADNLMVFSNGYLESIAIINNVLHIFQHLSGLTPNPAKSEVFI--LVKETTKNQI 200
Query: 673 QGISSIRLVSNLGHYLGFPLVQGRVTNETYKHIIEKMHHRLASWKGKLLNKSGRVCLEKS 732
+ + LG P + ++ K ++++ +L W G+ L+ +GR+ L S
Sbjct: 199 TNMLGYKEGKLPVR*LGVPQLTTKLKASDCKVLVDRKPSKLQHWTGRSLSYAGRLQLINS 20
Query: 733 VTTSM 737
+ SM
Sbjct: 19 ILFSM 5
>AV780221
Length = 461
Score = 45.8 bits (107), Expect = 3e-05
Identities = 20/47 (42%), Positives = 31/47 (65%)
Frame = +3
Query: 776 VKWTTVTSPRKFGGLAIRDARNTNLALLGKLVWSLLHDKNKLWVRLL 822
VKW+TV P+ GGL +++ N ALLGK W +L +++ LW ++L
Sbjct: 153 VKWSTVCRPKDEGGLGVQNLGLFNKALLGKWRWRMLKERDGLWYKVL 293
>BP060613
Length = 378
Score = 44.3 bits (103), Expect = 8e-05
Identities = 21/60 (35%), Positives = 32/60 (53%)
Frame = +1
Query: 763 IWGGNGVT*KWNMVKWTTVTSPRKFGGLAIRDARNTNLALLGKLVWSLLHDKNKLWVRLL 822
+W + T + KW +T + GGL +D N ALL K W +LH+ + LWV++L
Sbjct: 43 VWWSSKGTRGVHWRKWDLLTELKDEGGLGFKDFEIQNQALLAKQAWRILHNPDALWVQIL 222
>TC19704 weakly similar to UP|Q9SZ87 (Q9SZ87) RNA-directed DNA
polymerase-like protein, partial (3%)
Length = 530
Score = 34.7 bits (78), Expect = 0.066
Identities = 14/51 (27%), Positives = 24/51 (46%)
Frame = -3
Query: 292 FFHTQTIVRRKHNKIHGLHLDDGTWCTYDTQLQKTAISFYQNLFQKDRTVN 342
FFH T+ RR+ N+I + GTW + + FY ++++ N
Sbjct: 204 FFHASTVQRRERNRIERIKDMQGTWVRSQLAINRDVPDFYPDIYKSTNRQN 52
>TC15332 similar to UP|PPA1_LYCES (P27061) Acid phosphatase precursor 1 ,
partial (89%)
Length = 1040
Score = 31.6 bits (70), Expect = 0.56
Identities = 12/38 (31%), Positives = 25/38 (65%)
Frame = -2
Query: 439 LKNFRPISLCNVIFKVITKVLVNRIRPFLDELVSPFQS 476
+KN +P+S+C++I K+ K L+N P + +++ F +
Sbjct: 508 VKNLQPVSMCSIIGKIREKRLINVENPRVFSIITKFNT 395
>TC12829
Length = 448
Score = 31.2 bits (69), Expect = 0.73
Identities = 16/44 (36%), Positives = 23/44 (51%)
Frame = +3
Query: 719 KLLNKSGRVCLEKSVTTSMPVYSMQINLLRKELCDGIDKITKSF 762
K L ++GR L KSVT ++P Y M L +C I+ + F
Sbjct: 255 KFLYRAGREVLIKSVTKAIPTYIMSCFALPDSICSQIEGMVGKF 386
>TC10831 similar to UP|Q7X9B2 (Q7X9B2) 9/13 hydroperoxide lyase, partial
(30%)
Length = 565
Score = 29.6 bits (65), Expect = 2.1
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 640 LNEFCSASGLKVNVTKSKSMCSKRVPERTKRDIQGISSIR 679
L FC GL+V V SMC +R + ++GISS+R
Sbjct: 192 LRSFCRG-GLRVKVRSC*SMCCGATGKRRRSRLRGISSVR 308
>TC11679 similar to UP|Q8I738 (Q8I738) TcC31.4, partial (8%)
Length = 652
Score = 28.9 bits (63), Expect = 3.6
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Frame = -3
Query: 391 PLFFKHFWEKTGESLWELVDISFRRGFIDEAIVETLLVLIPKENNPTHLKNF------RP 444
PLF HF + + ESL L ISF R I + +V + ++ +NF +P
Sbjct: 368 PLFLPHFHK*SQESLTHLRCISFSRVII*RRVNHPSMVQFTRRSDHNRSRNFGISTRHKP 189
Query: 445 ISLCNV 450
++L +
Sbjct: 188 VTLLTI 171
>BP074705
Length = 379
Score = 28.1 bits (61), Expect = 6.1
Identities = 24/84 (28%), Positives = 39/84 (45%)
Frame = -1
Query: 732 SVTTSMPVYSMQINLLRKELCDGIDKITKSFIWGGNGVT*KWNMVKWTTVTSPRKFGGLA 791
+V TS+P+YSMQ L + + K +++ G WN+V W GLA
Sbjct: 292 AVLTSLPLYSMQALCLFESVLIMWIKFSQT----KGG*YKSWNLVVWDA-------RGLA 146
Query: 792 IRDARNTNLALLGKLVWSLLHDKN 815
A++T + L +L + + KN
Sbjct: 145 QAKAKDTKVRALTRLKKKIYYVKN 74
>BP054632
Length = 514
Score = 27.7 bits (60), Expect = 8.0
Identities = 16/56 (28%), Positives = 28/56 (49%)
Frame = +3
Query: 597 EDRS*RPIHISKDGPGLSHLTFADDVLLFCEANTQQVQMVIDTLNEFCSASGLKVN 652
+D +P ++ SHLT +D + E Q ++ I+ LNE SA+ ++N
Sbjct: 264 QDAYKKPNYVQISVESYSHLTGLEDQVKTYEEKVQTLEDEINELNEKLSAANSEIN 431
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.345 0.152 0.514
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,361,689
Number of Sequences: 28460
Number of extensions: 216731
Number of successful extensions: 1875
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1870
length of query: 855
length of database: 4,897,600
effective HSP length: 98
effective length of query: 757
effective length of database: 2,108,520
effective search space: 1596149640
effective search space used: 1596149640
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.6 bits)
S2: 59 (27.3 bits)
Medicago: description of AC135100.7