BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC134824.6 - phase: 0
(2242 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG662087 137 1e-32
BI417841 72 1e-12
BP065719 70 5e-12
TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase regi... 62 8e-10
TC16320 weakly similar to UP|Q84TE0 (Q84TE0) At5g51080, partial ... 59 1e-08
TC18698 57 2e-08
AV427422 55 9e-08
AV410603 53 6e-07
BF177840 49 1e-05
TC8786 similar to UP|Q9ZTK7 (Q9ZTK7) CONSTANS-like protein 2, pa... 36 0.058
TC18379 similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich glycop... 35 0.13
TC12375 weakly similar to GB|AAA59989.1|189479|HUMP53T p53 cellu... 35 0.17
TC17551 weakly similar to UP|AAR24662 (AAR24662) At5g26960, part... 27 0.23
TC15341 similar to UP|Q9M0H8 (Q9M0H8) Predicted proline-rich pro... 33 0.64
CB826726 32 0.83
BG662122 32 0.83
TC15253 weakly similar to UP|Q9ZT16 (Q9ZT16) Arabinogalactan-pro... 32 1.1
TC8445 similar to UP|O80910 (O80910) At2g38410 protein, partial ... 32 1.1
TC14279 similar to UP|Q09085 (Q09085) Hydroxyproline-rich glycop... 32 1.1
AU251655 32 1.4
>BG662087
Length = 373
Score = 137 bits (346), Expect = 1e-32
Identities = 65/119 (54%), Positives = 86/119 (71%)
Frame = +1
Query: 1250 GKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREK 1309
GK RM VD+ DLNKA PKD++PLP ID LVD + +++ S MD +SGY+QIKM P D +K
Sbjct: 16 GKWRMWVDYTDLNKACPKDSYPLPSIDKLVDGASDNELLSLMDAYSGYHQIKMHPSDEDK 195
Query: 1310 TSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSADEEQH 1368
T+F+T +CY+ +PFGL NAGATYQ M +F D + + +EVY+D+MIVKSA H
Sbjct: 196 TAFMTARVNYCYQTIPFGLKNAGATYQXLMDRVFXDXVGRNMEVYLDNMIVKSALRANH 372
>BI417841
Length = 617
Score = 71.6 bits (174), Expect = 1e-12
Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 2/136 (1%)
Frame = +1
Query: 1657 NSKWGLVFDGAV--NAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEA 1714
N L FDG+ N G GAV+ + G + + + TNN AEY I G++ A
Sbjct: 127 NRSCTLEFDGSSKGNPGSAGAGAVLRAEDGSKV-YLREGVGNQTNNQAEYRGLILGLKHA 303
Query: 1715 IDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQ 1774
+ +H+++ GDS LV Q++G W+ + + + A+ L + F +++H+PR N
Sbjct: 304 HEQGYQHINVKGDSQLVCKQVEGSWKARNPNIASLCNEAKELKSKFQSFDINHVPRQYNS 483
Query: 1775 MADALATLSSMFRVNH 1790
AD A L H
Sbjct: 484 EADVQANLGVNLPAGH 531
>BP065719
Length = 567
Score = 69.7 bits (169), Expect = 5e-12
Identities = 40/132 (30%), Positives = 72/132 (54%), Gaps = 2/132 (1%)
Frame = +3
Query: 166 VSKVDVPKKFKVPEFDKYNGLTCPQN--HIVKYVRKMGNYKDNDSLMIHYFQDSLMEDAA 223
V + ++P+ +KVP+F K++G + HI +Y + G+ N++L + YF SL ++A
Sbjct: 147 VLESELPRGWKVPKFTKFSGDSGESTVEHIARYQIEAGDLAINENLKMKYFPSSLTKNAF 326
Query: 224 EWYTSLSKDDVHTFDELATAFRSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRGAA 283
W+T+L+ VHT+ +L F + F K + + L S+ +K ES +Y R+R
Sbjct: 327 TWFTTLAPRSVHTWAQLERIFHEQF-FRGECKVSXKDLASVKRKPAESIDDYLNRFRMLK 503
Query: 284 ARITPALDEEEM 295
+R + E E+
Sbjct: 504 SRCFTHVSEHEL 539
>TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase region
(Fragment), partial (10%)
Length = 572
Score = 62.4 bits (150), Expect = 8e-10
Identities = 36/96 (37%), Positives = 49/96 (50%), Gaps = 1/96 (1%)
Frame = +2
Query: 2024 DNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNI-KRIIQKMVTTYKDWHE 2082
+NG + Q C+ I+ SS PQ NG EAANK I K I +++ W +
Sbjct: 8 ENGIQFTSKQTQDFCDGMGIQMRFSSVKHPQTNGQTEAANKVILKGIKRRLYEAEGRWID 187
Query: 2083 MLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEV 2118
LP L Y T +SS TPF L YG + +LP+E+
Sbjct: 188 ELPIVLWSYNTMPQSSIKETPF*LTYGADTMLPVEI 295
>TC16320 weakly similar to UP|Q84TE0 (Q84TE0) At5g51080, partial (11%)
Length = 632
Score = 58.5 bits (140), Expect = 1e-08
Identities = 29/91 (31%), Positives = 44/91 (47%)
Frame = +2
Query: 1704 YEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKV 1763
Y I G++ AI KH+ + GDS LV NQ++G W+ + + A+ L F
Sbjct: 2 YRGLILGLKHAIKEGYKHIQVKGDSMLVCNQVQGLWKIKNQNIASLCSEAKELKNKFLSF 181
Query: 1764 ELHHIPRDENQMADALATLSSMFRVNHWNDV 1794
+++HIPR+ N AD A R +V
Sbjct: 182 KINHIPREYNSEADVQANFGISLRAGQVEEV 274
>TC18698
Length = 808
Score = 57.4 bits (137), Expect = 2e-08
Identities = 31/62 (50%), Positives = 39/62 (62%)
Frame = -2
Query: 1307 REKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSADEE 1366
++KT+ + Y+VMP GL N TYQR M +FH I K VEVYV+DMIVKS+ E
Sbjct: 807 KKKTTLKINRVNYYYQVMPLGLKNI*TTYQRLMDKIFHKQI*KNVEVYVEDMIVKSSQE* 628
Query: 1367 QH 1368
H
Sbjct: 627 FH 622
>AV427422
Length = 417
Score = 55.5 bits (132), Expect = 9e-08
Identities = 33/133 (24%), Positives = 63/133 (46%), Gaps = 2/133 (1%)
Frame = +1
Query: 1973 SNGHRFILVAIDYFTKWVEAASYTN-VTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNN 2031
S G+ +LV +D +K+ + T +V+A ++ +GVP I++D +
Sbjct: 19 SKGYEAVLVVVDRLSKFSHFVPLKHPYTAKVIADIFVREVVRLHGVPLSIVSDRDPLFMS 198
Query: 2032 NVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRIIQKMVTTY-KDWHEMLPYALHG 2090
N + L + + S+ Y P+ +G E N+ ++ ++ + K W +P+A +
Sbjct: 199 NFWKELFKMQGTKLKMSTAYHPESDGQTEVVNRCLETYLRCFIADQPKSWAHWVPWAEYW 378
Query: 2091 YRTTVRSSTGATP 2103
Y T+ STG TP
Sbjct: 379 YNTSYHVSTGQTP 417
>AV410603
Length = 162
Score = 52.8 bits (125), Expect = 6e-07
Identities = 26/51 (50%), Positives = 34/51 (65%)
Frame = +1
Query: 1267 KDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWG 1317
KD+FP+P +D L+D S+ FS +D SGY+QI + PEDR KT F T G
Sbjct: 10 KDSFPMPTVDELLDELRGSQFFSKLDLRSGYHQILVKPEDRHKTVFRTHHG 162
>BF177840
Length = 410
Score = 48.5 bits (114), Expect = 1e-05
Identities = 26/101 (25%), Positives = 49/101 (47%), Gaps = 1/101 (0%)
Frame = +2
Query: 2019 SKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRIIQKMVT-TY 2077
+ I++D T ++ + L + + S+ PQ +G E NK + +++ ++
Sbjct: 11 TSIVSDRDTKFISHFWRTLWGKVGTKLLYSTTCHPQTDGQTEVVNKTLSTLLRSVLERNL 190
Query: 2078 KDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEV 2118
K W LP+ Y V S+T +PF +VYG + PL++
Sbjct: 191 KMWETWLPHIEFAYNRVVHSTTKHSPFEIVYGYNPLTPLDL 313
>TC8786 similar to UP|Q9ZTK7 (Q9ZTK7) CONSTANS-like protein 2, partial
(33%)
Length = 594
Score = 36.2 bits (82), Expect = 0.058
Identities = 26/119 (21%), Positives = 50/119 (41%), Gaps = 2/119 (1%)
Frame = +1
Query: 31 AAQEQPVPVVSTAANVTPTVT--TDPRSIMPSGYPYGLPLYYTANTGAGTSGTTNNGPIP 88
A P P STAA P+ P+S P+ P + + +A + + ++ P+P
Sbjct: 103 ATHANPPPPPSTAARTPPSSAPPATPKSTPPTSSPPAIHVSLSAKSASKPPLASHARPMP 282
Query: 89 GANLTPVSTALTQAATTVTEPIVNAVPLFVHANAHHGSIATTGTMEERMEELAKELQRE 147
+ +P + +T T + P N P + + +TT T + + K+ Q++
Sbjct: 283 PTSASPAT--MTSTPPTPSPPATNVPPSLPSSTPPPPTSSTTNTCSQMQNQNQKQKQQK 453
>TC18379 similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich glycoprotein
DZ-HRGP precursor, partial (8%)
Length = 584
Score = 35.0 bits (79), Expect = 0.13
Identities = 24/83 (28%), Positives = 30/83 (35%), Gaps = 4/83 (4%)
Frame = +1
Query: 391 YPYMPYSQHSFFPPFYHQYPLPPGQPQVPVNAIAQQIKQQLPVQQQQQQQQQQYTRP--- 447
YP +PY QH F+PP P PP P P P + Y P
Sbjct: 202 YPSLPYPQHQFYPPPMAPPPPPPPAPAPPA-----------PPPYWAAPPPRPYGPPLFT 348
Query: 448 -TFPPIPMLYAELLPTLLQRGHC 469
T PP P A + ++ HC
Sbjct: 349 STLPPRPPKPAPPKNVVKEKSHC 417
>TC12375 weakly similar to GB|AAA59989.1|189479|HUMP53T p53 cellular tumor
antigen {Homo sapiens;} , partial (6%)
Length = 468
Score = 34.7 bits (78), Expect = 0.17
Identities = 17/46 (36%), Positives = 25/46 (53%)
Frame = +2
Query: 396 YSQHSFFPPFYHQYPLPPGQPQVPVNAIAQQIKQQLPVQQQQQQQQ 441
+S HS+F P + Q PL + P+N Q++Q LP+ Q Q Q
Sbjct: 89 FSSHSYFLPQFFQSPL*LNRLLQPLNRQQNQLQQNLPLPHQLQHHQ 226
>TC17551 weakly similar to UP|AAR24662 (AAR24662) At5g26960, partial (22%)
Length = 505
Score = 27.3 bits (59), Expect(2) = 0.23
Identities = 30/107 (28%), Positives = 39/107 (36%), Gaps = 18/107 (16%)
Frame = +1
Query: 397 SQHSFFPPFYHQ-------------YPLPPGQPQVPVNAIAQQIKQQLPVQQQ---QQQQ 440
S H F PP H +PLP P VP + + ++ P + +
Sbjct: 118 SHHHFLPP*RHHSRLPHPRPTLFPPFPLPRLPPLVPPPPLPRLLRPPPPPPPPPPLRPRP 297
Query: 441 QQQYTRPTF--PPIPMLYAELLPTLLQRGHCTTRQGKPPPDPLPPRF 485
+ RP PP + LP LLQR R PP P PRF
Sbjct: 298 HRHRLRPLLRHPPRRQMEPLPLPPLLQRR--LPRDLPLPPLPRAPRF 432
Score = 25.4 bits (54), Expect(2) = 0.23
Identities = 11/27 (40%), Positives = 15/27 (54%)
Frame = +3
Query: 379 VAPINTAQMPPSYPYMPYSQHSFFPPF 405
V+PI T PP P P +++ PPF
Sbjct: 51 VSPIQTTPPPPPPPPSPNHRNNLPPPF 131
>TC15341 similar to UP|Q9M0H8 (Q9M0H8) Predicted proline-rich protein,
partial (33%)
Length = 1002
Score = 32.7 bits (73), Expect = 0.64
Identities = 32/92 (34%), Positives = 40/92 (42%), Gaps = 17/92 (18%)
Frame = +1
Query: 377 ATVAPINT---AQMPPSYPYMPYSQHSFFPPFYHQYPLPPGQPQV------PVNAIAQQI 427
+T P NT AQ+P + Y+P Q P + P QP P + Q
Sbjct: 676 STPLPGNTQTVAQLPQNQ-YLPPDQQYRTPQMQDMSRVAP-QPCTNXSGXSPPPPVQQYP 849
Query: 428 KQQLPVQQQQQQQQQQY--------TRPTFPP 451
+ Q P QQQQQQQQQQ +PT PP
Sbjct: 850 QYQQPQQQQQQQQQQQQWPQQLPQQVQPTQPP 945
>CB826726
Length = 505
Score = 32.3 bits (72), Expect = 0.83
Identities = 19/49 (38%), Positives = 25/49 (50%), Gaps = 9/49 (18%)
Frame = +2
Query: 407 HQYPLPPGQPQV---------PVNAIAQQIKQQLPVQQQQQQQQQQYTR 446
++YPL P P + P Q + +LP QQQQQQQQQ Y +
Sbjct: 275 NRYPLHPPPPGIGYGRGGGPNPNPNPNQGFQPRLPYQQQQQQQQQHYVQ 421
>BG662122
Length = 386
Score = 32.3 bits (72), Expect = 0.83
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +2
Query: 464 LQRGHCTTRQGKPPPDPLPPRFRSDLK--CDFHQGALGHDVEGCYALKYIVKKLIDQGKL 521
++ H + G+ P PPR D C++ + + HD++ C+ LK ++KLI G+L
Sbjct: 134 VKAAHMVGKSGQS*P---PPRRGIDTTK*CEYRRSVV-HDIDDCFTLKREIEKLIKMGRL 301
>TC15253 weakly similar to UP|Q9ZT16 (Q9ZT16) Arabinogalactan-protein
(ATAGP4) (AT5G10430/F12B17_220), partial (42%)
Length = 575
Score = 32.0 bits (71), Expect = 1.1
Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Frame = +1
Query: 389 PSYPYMPYSQHSFFPPFYHQYP--LPPGQPQVPVNAIAQQIKQQLPVQQQQQQQQQQYTR 446
P + + Q PP HQ P LPP Q+P+ + + LP+ Q +
Sbjct: 217 PHLQQLHHQQLPLLPPLLHQLPPLLPPPPLQLPLQPLPPPVHPPLPLPLHPPQSHPAQHQ 396
Query: 447 PTFPPIPMLYAELL 460
PP+ L+
Sbjct: 397 AQAPPLDQAQTALI 438
>TC8445 similar to UP|O80910 (O80910) At2g38410 protein, partial (7%)
Length = 841
Score = 32.0 bits (71), Expect = 1.1
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 8/77 (10%)
Frame = +1
Query: 382 INTAQMPPSYPYMPYSQHSFFPPFYHQYPLPPGQPQVPVNAIAQQIKQQLP--------V 433
++ P Y P+ QH P +H + P QPQ+ Q I+Q P +
Sbjct: 13 LHNEPQPLQYQPQPHLQHQ---PQHHPHFQPHPQPQLQSQPQPQHIQQSQPQPQSQPQHI 183
Query: 434 QQQQQQQQQQYTRPTFP 450
QQ Q Q Q Q+ + + P
Sbjct: 184 QQPQPQPQLQHIQQSQP 234
>TC14279 similar to UP|Q09085 (Q09085) Hydroxyproline-rich glycoprotein
(HRGP) (Fragment), partial (57%)
Length = 941
Score = 32.0 bits (71), Expect = 1.1
Identities = 30/113 (26%), Positives = 42/113 (36%), Gaps = 7/113 (6%)
Frame = +1
Query: 381 PINTAQMPPSYPYM--PYSQHSFFPPFYHQYPLPPGQPQVPVNAIAQQIKQQLPVQQQQQ 438
P T+ PP Y Y+ P S PP+++ P PP P I + P +
Sbjct: 340 PPPTSSPPPPYHYVSPPPPSPSPPPPYHYASPPPPSPSPAPT-----YIYKSPPPPVKLP 504
Query: 439 QQQQQYTRPTFPPIPMLYAELLPTLLQRGHCTTRQGKPPP-----DPLPPRFR 486
YT P PP P PT + + + PPP P PP ++
Sbjct: 505 PPPYHYTSPP-PPSP----SPAPTYIYKSPPPPTKSPPPPVYIYASPPPPIYK 648
Score = 30.8 bits (68), Expect = 2.4
Identities = 26/98 (26%), Positives = 31/98 (31%), Gaps = 2/98 (2%)
Frame = +1
Query: 388 PPSYPYM--PYSQHSFFPPFYHQYPLPPGQPQVPVNAIAQQIKQQLPVQQQQQQQQQQYT 445
PP Y Y P HS PP+Y++ P PP P P + P +
Sbjct: 121 PPPYYYQSPPPPSHSPPPPYYYKSP-PPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPP 297
Query: 446 RPTFPPIPMLYAELLPTLLQRGHCTTRQGKPPPDPLPP 483
P P Y P PPP P PP
Sbjct: 298 PSPIPHPPYYYKSPPPPTSSPPPPYHYVSPPPPSPSPP 411
Score = 29.6 bits (65), Expect = 5.4
Identities = 25/99 (25%), Positives = 31/99 (31%), Gaps = 4/99 (4%)
Frame = +1
Query: 388 PPSYPYMPYSQHSFFPPFYHQYPLPPGQPQVPVNAIAQQIKQQLPVQQQQQQQQQQYTRP 447
PP P Y + PP+Y++ P PP P Q P Y P
Sbjct: 31 PPPVPKPYYYKSPPPPPYYYKSPPPPSPSPPP-----PYYYQSPPPPSHSPPPPYYYKSP 195
Query: 448 ----TFPPIPMLYAELLPTLLQRGHCTTRQGKPPPDPLP 482
PP P Y P + PPP P+P
Sbjct: 196 PPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPIP 312
>AU251655
Length = 397
Score = 31.6 bits (70), Expect = 1.4
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 1076 MHVSELNHNKPVEHSNPTVPPSFDFPVYEAE-DEEGDDIPY 1115
+H++ELN N+ H N + P F F EA E GD P+
Sbjct: 51 IHLTELNDNEKNNHGNQQLNPVFAFDQKEAAMSEAGDSAPF 173
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.318 0.135 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,786,698
Number of Sequences: 28460
Number of extensions: 542931
Number of successful extensions: 3622
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 3185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3461
length of query: 2242
length of database: 4,897,600
effective HSP length: 105
effective length of query: 2137
effective length of database: 1,909,300
effective search space: 4080174100
effective search space used: 4080174100
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Medicago: description of AC134824.6