TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC134521.7 + phase: 0 
         (183 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC7848 homologue to UP|Q9AVR8 (Q9AVR8) Sucrose synthase isoform ...    28  0.72
TC13932 similar to UP|Q38901 (Q38901) Cytosolic cyclophilin  (Pe...    28  0.93
TC13761 weakly similar to GB|AAO63290.1|28950733|BT005226 At5g57...    28  1.2
TC16802 similar to GB|AAP31963.1|30387595|BT006619 At1g01300 {Ar...    27  2.7
TC17593 similar to UP|Q8H0T8 (Q8H0T8) Eukaryotic initiation fact...    26  3.6
TC16845 weakly similar to UP|Q9AT68 (Q9AT68) ADP-ribosylation fa...    26  4.6
TC13814 similar to UP|Q7XAU4 (Q7XAU4) Ethylene responsive protei...    26  4.6
TC19643 similar to UP|Q9LFG8 (Q9LFG8) ABC transporter-like prote...    26  4.6
BP055028                                                               25  6.1
TC11115 weakly similar to UP|NFL1_HUMAN (Q14494) Nuclear factor ...    25  7.9
TC15366 similar to GB|AAO63329.1|28950811|BT005265 At5g21920 {Ar...    25  7.9
AW720248                                                               25  7.9
BP076149                                                               25  7.9

>TC7848 homologue to UP|Q9AVR8 (Q9AVR8) Sucrose synthase isoform 3  ,
           complete
          Length = 2779

 Score = 28.5 bits (62), Expect = 0.72
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = -3

Query: 25  KFPFSQPNTSKQLNYQFTTLKPQASAKGFSNTR 57
           KFP   P+TS  LN++++  +  ++   +++TR
Sbjct: 467 KFPLELPSTSSSLNFRYSAGRSSSTTMEYTSTR 369


>TC13932 similar to UP|Q38901 (Q38901) Cytosolic cyclophilin
           (Peptidyl-prolyl cis-trans isomerase) (PPIase)
           (Rotamase) , partial (96%)
          Length = 580

 Score = 28.1 bits (61), Expect = 0.93
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 38  NYQFTTLKPQASAKGFSNTRPP 59
           N+QF+T+ PQ+S   FS+  PP
Sbjct: 574 NFQFSTICPQSSITTFSDVLPP 509


>TC13761 weakly similar to GB|AAO63290.1|28950733|BT005226 At5g57910
           {Arabidopsis thaliana;}, partial (21%)
          Length = 652

 Score = 27.7 bits (60), Expect = 1.2
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +3

Query: 9   NPILQSSTQSPICKPQKFPFSQPNTSKQLNY--QFTTLKPQASAKGFSNTRPP 59
           +P+ +   +  + KPQK     P   K  NY  + +TL+P   A   SN  PP
Sbjct: 498 HPLPKPQPKQQVLKPQKIKIQAPTIPKGRNYNRKESTLRPPRIA---SNMNPP 647


>TC16802 similar to GB|AAP31963.1|30387595|BT006619 At1g01300 {Arabidopsis
           thaliana;}, partial (28%)
          Length = 812

 Score = 26.6 bits (57), Expect = 2.7
 Identities = 21/61 (34%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
 Frame = +1

Query: 26  FPFSQPNTSKQLNYQFTTLKPQASAKGFSNTRPPSTN-KAKDDVPIKKNPNNKNDDDDIP 84
           F FS P+ S      + TLKP       S T PPS     K     KKN    N  D   
Sbjct: 58  FSFS*PSPSHSPPLLYLTLKPNL*PSTLSPTNPPSHGLNLKKKKKKKKNSPYPNPKDPTQ 237

Query: 85  K 85
           K
Sbjct: 238 K 240


>TC17593 similar to UP|Q8H0T8 (Q8H0T8) Eukaryotic initiation factor 4,
           eIF4-like protein, partial (19%)
          Length = 704

 Score = 26.2 bits (56), Expect = 3.6
 Identities = 20/64 (31%), Positives = 28/64 (43%)
 Frame = +1

Query: 24  QKFPFSQPNTSKQLNYQFTTLKPQASAKGFSNTRPPSTNKAKDDVPIKKNPNNKNDDDDI 83
           +K   SQ N   QLN QF   +  ++  G SNT       AK +VP        ++ D +
Sbjct: 502 RKHDASQVNRQDQLNSQFARAQISSNQGGGSNT------LAKAEVPWSVRRETLSEKDRV 663

Query: 84  PKEV 87
            K V
Sbjct: 664 LKTV 675


>TC16845 weakly similar to UP|Q9AT68 (Q9AT68) ADP-ribosylation factor 60
           (Fragment), partial (61%)
          Length = 788

 Score = 25.8 bits (55), Expect = 4.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 49  SAKGFSNTRPPSTNKAKDDVPIKKNPNNK 77
           +A+G    +PP+ + AK D    +NPN +
Sbjct: 351 AAQGSGAQQPPNADPAKHDAEAVQNPNER 437


>TC13814 similar to UP|Q7XAU4 (Q7XAU4) Ethylene responsive protein, partial
           (20%)
          Length = 535

 Score = 25.8 bits (55), Expect = 4.6
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = +3

Query: 11  ILQSSTQSPICKPQKFPFSQPNTSKQLNYQFTTLKPQASAKGFSNTRPPST 61
           +L+S T   +C       S+P+T  +   + TT+ P ASA+    TRP ST
Sbjct: 375 LLRSETHVRVCVLG----SEPSTPPKKLLKLTTMLPSASAE----TRPSST 503


>TC19643 similar to UP|Q9LFG8 (Q9LFG8) ABC transporter-like protein, partial
           (12%)
          Length = 550

 Score = 25.8 bits (55), Expect = 4.6
 Identities = 11/24 (45%), Positives = 15/24 (61%)
 Frame = -2

Query: 61  TNKAKDDVPIKKNPNNKNDDDDIP 84
           TNKAK +  +KKNP   +D   +P
Sbjct: 309 TNKAK*NKNLKKNPQAHSDPQTVP 238


>BP055028 
          Length = 530

 Score = 25.4 bits (54), Expect = 6.1
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +2

Query: 60  STNKAKDDVPIKKNPNNKNDDDDIPKEVMYRIIGRI 95
           + N   + V  KK     N     PKE M  IIG+I
Sbjct: 167 NNNNNNNVVKSKKKKKKNNGSSSDPKEYMRNIIGKI 274


>TC11115 weakly similar to UP|NFL1_HUMAN (Q14494) Nuclear factor erythroid 2
           related factor 1 (NF-E2 related factor 1) (NFE2-related
           factor 1) (Nuclear factor, erythroid derived 2, like 1)
           (Transcription factor 11) (Transcription factor HBZ17)
           (Transcription factor LCR-F1) (Locus con, partial (3%)
          Length = 622

 Score = 25.0 bits (53), Expect = 7.9
 Identities = 7/19 (36%), Positives = 14/19 (72%)
 Frame = +1

Query: 165 EEVEKNWDEMWQQENVSDD 183
           ++V + W++ W  ++VSDD
Sbjct: 205 KDVTQQWEDDWDDDDVSDD 261


>TC15366 similar to GB|AAO63329.1|28950811|BT005265 At5g21920 {Arabidopsis
           thaliana;}, partial (23%)
          Length = 568

 Score = 25.0 bits (53), Expect = 7.9
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +1

Query: 8   SNPILQSSTQSPICKPQKFPFSQPNTSKQLNYQFTTLKPQASAKGFSNTRP 58
           SN I    +Q+P  +P  FPFS P T + L+++   L   +S   FS   P
Sbjct: 160 SNTIRTPHSQTPNLQPHLFPFS-P*TPQILHHRHR*LFQISSLPRFSKPIP 309


>AW720248 
          Length = 497

 Score = 25.0 bits (53), Expect = 7.9
 Identities = 10/19 (52%), Positives = 12/19 (62%)
 Frame = -2

Query: 9  NPILQSSTQSPICKPQKFP 27
          NP++ SST  P  KP  FP
Sbjct: 70 NPVITSSTGHPYFKPISFP 14


>BP076149 
          Length = 386

 Score = 25.0 bits (53), Expect = 7.9
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +1

Query: 44  LKPQASAKGFSNTRPPSTNKAKDDVPIKKNPNN 76
           + P+A A  F+  R P T K K ++PI++ PNN
Sbjct: 106 ISPKAEACFFA--RKPQT-KRKKNLPIRQQPNN 195


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.316    0.134    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,175,206
Number of Sequences: 28460
Number of extensions: 42215
Number of successful extensions: 340
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of query: 183
length of database: 4,897,600
effective HSP length: 85
effective length of query: 98
effective length of database: 2,478,500
effective search space: 242893000
effective search space used: 242893000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)