TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC134521.1 - phase: 0 /pseudo
         (324 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC15428                                                                29  1.2
BP052318                                                               27  3.6
TC9240                                                                 27  6.1
TC11308 similar to UP|CENB_HUMAN (P07199) Major centromere autoa...    27  6.1
TC15669 homologue to UP|PRS6_ARATH (Q9SEI4) 26S protease regulat...    26  8.0

>TC15428 
          Length = 629

 Score = 28.9 bits (63), Expect = 1.2
 Identities = 17/61 (27%), Positives = 24/61 (38%), Gaps = 1/61 (1%)
 Frame = -2

Query: 92  PVLDEVPFHAFGPIPKIPTIAKALHLEVADIKDKFTTKDGLPCLPYNFLHQK-ATTCFEK 150
           P     P H    +  +PT+ K  H  V+      T     PC  +  L +    TCF+K
Sbjct: 310 PNFTPFPVHLASHLENLPTVLKGFHFSVSPAS*TATRDASPPCFHHF*LPKSPRQTCFDK 131

Query: 151 S 151
           S
Sbjct: 130 S 128


>BP052318 
          Length = 460

 Score = 27.3 bits (59), Expect = 3.6
 Identities = 23/75 (30%), Positives = 26/75 (34%), Gaps = 16/75 (21%)
 Frame = +2

Query: 205 RTSHGKGTIVCCTPLLHRWITSHLP----------------RPSIRPEPIPWSQKLMTWT 248
           RTS      V  TP  H   TS  P                RP I P P P  + L  WT
Sbjct: 113 RTSASSSWTVTPTPPRHITATSSPPPPPSAPTSPPSPYPSLRPPISPPPSPLPRHLRRWT 292

Query: 249 PKDIIWFNPSCDPEF 263
           P    W +P   P +
Sbjct: 293 P----WPSPPSLPSW 325


>TC9240 
          Length = 541

 Score = 26.6 bits (57), Expect = 6.1
 Identities = 11/19 (57%), Positives = 14/19 (72%)
 Frame = +1

Query: 16  PDTESLEGLRGLTKMLKNP 34
           P T +LEGL+ L K L+NP
Sbjct: 142 PGTPNLEGLKDLAKSLQNP 198


>TC11308 similar to UP|CENB_HUMAN (P07199) Major centromere autoantigen B
           (Centromere protein B) (CENP-B), partial (4%)
          Length = 756

 Score = 26.6 bits (57), Expect = 6.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 218 PLLHRWITSHLPRPSIRPEPIP 239
           P LH  +  HLPRP   P P+P
Sbjct: 236 PHLHHPLPLHLPRPLPLPPPLP 301


>TC15669 homologue to UP|PRS6_ARATH (Q9SEI4) 26S protease regulatory subunit
           6B homolog (26S proteasome AAA-ATPase subunit RPT3)
           (Regulatory particle triple-A ATPase subunit 3), partial
           (34%)
          Length = 608

 Score = 26.2 bits (56), Expect = 8.0
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +3

Query: 229 PRPSIRPEPIPWSQKLMTWTP 249
           P P++ P+P P+S K++ ++P
Sbjct: 12  PNPTLTPKPKPYSLKILRFSP 74


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.324    0.144    0.458 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,492,590
Number of Sequences: 28460
Number of extensions: 112016
Number of successful extensions: 546
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of query: 324
length of database: 4,897,600
effective HSP length: 90
effective length of query: 234
effective length of database: 2,336,200
effective search space: 546670800
effective search space used: 546670800
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)