TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC134322.2 + phase: 0 /pseudo
         (840 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BI417841                                                               54  1e-07
BG662087                                                               47  1e-05
TC14953 weakly similar to UP|Q9LK01 (Q9LK01) Hydrolase-like prot...    32  0.54
TC9542 homologue to UP|CAMT_MEDSA (Q40313) Caffeoyl-CoA O-methyl...    28  4.6

>BI417841 
          Length = 617

 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 36/106 (33%), Positives = 53/106 (49%), Gaps = 4/106 (3%)
 Frame = +1

Query: 671 LSVDGSS--NLKGSGAGVTLEGPYG--VLIEQSLRFDFKSSNNQAEYEALFAGMRLALKV 726
           L  DGSS  N   +GAG  L    G  V + + +      +NNQAEY  L  G++ A + 
Sbjct: 142 LEFDGSSKGNPGSAGAGAVLRAEDGSKVYLREGVG---NQTNNQAEYRGLILGLKHAHEQ 312

Query: 727 VVKELEAKSDSQLVFRQVTGNFQTKDPQLLMYLESVMYLTQKFVSF 772
             + +  K DSQLV +QV G+++ ++P +         L  KF SF
Sbjct: 313 GYQHINVKGDSQLVCKQVEGSWKARNPNIASLCNEAKELKSKFQSF 450


>BG662087 
          Length = 373

 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 33/93 (35%), Positives = 45/93 (47%)
 Frame = +2

Query: 306 NGECARTTLI*IRCVPRMLIPCRA*INWYITLQGMTFLASWMLTRATTKFECT*RMKKRQ 365
           NG C  TT I* R   + LI C+ * NW++    M+  A WM T+  TK  CT +M+ ++
Sbjct: 20  NGACGWTTRI*TRHAQKTLIHCQV*TNWWMERPTMSC*A*WMPTQVITKSRCTHQMRTKR 199

Query: 366 LL*QTKLIIVTKVCHLG*GILELLFKDWWIKSS 398
             *    I  T+    G* +        WI SS
Sbjct: 200 PS*PPG*ITATRQFRSG*RMPGRHINX*WIGSS 298


>TC14953 weakly similar to UP|Q9LK01 (Q9LK01) Hydrolase-like protein,
           partial (27%)
          Length = 591

 Score = 31.6 bits (70), Expect = 0.54
 Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
 Frame = +2

Query: 700 LRFDFKSSNNQAEYEALFAGMRLALKVVVKELEAKSDSQLVFRQVTGNFQTKDPQLLMYL 759
           L F F  +    +     +   L L +  K+ E K    L+  + T  F TK P  L+  
Sbjct: 35  LHFSFSWNPTSTQSHFKKSAFHLLLMLKSKD*EQKH*FLLMGMEQTSPFGTKSPPSLLKT 214

Query: 760 ESVMYLT---QKFVSFKYYMCLES----RTVEQTCWLSWLAPSDK 797
             +++L    Q+ +  +  M L S    + ++ TC LSW+  + K
Sbjct: 215 TGLLFLIGLFQELLKMRACMILSSTLLWKLLQMTCSLSWIRWTSK 349


>TC9542 homologue to UP|CAMT_MEDSA (Q40313) Caffeoyl-CoA
           O-methyltransferase  (Trans-caffeoyl-CoA
           3-O-methyltransferase) (CCoAMT) (CCoAOMT) , complete
          Length = 1012

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 20/55 (36%), Positives = 28/55 (50%)
 Frame = +3

Query: 346 WMLTRATTKFECT*RMKKRQLL*QTKLIIVTKVCHLG*GILELLFKDWWIKSSRV 400
           WMLTR TT + C         L*  KL+++TK+  +    L  LF   W+K  R+
Sbjct: 411 WMLTRRTTNWVC---------L*LRKLVLLTKL--ISEKALLSLFLMKWLKMRRI 542


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.358    0.156    0.572 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,821,093
Number of Sequences: 28460
Number of extensions: 200710
Number of successful extensions: 1892
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1381
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 493
Number of HSP's gapped (non-prelim): 1444
length of query: 840
length of database: 4,897,600
effective HSP length: 98
effective length of query: 742
effective length of database: 2,108,520
effective search space: 1564521840
effective search space used: 1564521840
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 59 (27.3 bits)