BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC134322.19 - phase: 0
(318 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP042557 77 4e-15
AV410062 70 5e-13
TC13094 similar to UP|Q94JM3 (Q94JM3) AT5g62000/mtg10_20, partia... 67 5e-12
TC10030 similar to UP|Q94JM3 (Q94JM3) AT5g62000/mtg10_20, partia... 65 1e-11
TC19318 similar to UP|Q94JM3 (Q94JM3) AT5g62000/mtg10_20, partia... 63 6e-11
BP049491 63 8e-11
AV409033 62 1e-10
AV781081 52 1e-07
AV408921 45 2e-05
BP043161 42 1e-04
CN825794 42 1e-04
AV779806 40 5e-04
AV416874 34 0.037
TC15419 similar to UP|Q9M0V3 (Q9M0V3) UV-damaged DNA binding fac... 31 0.32
TC15020 homologue to UP|Q9QX99 (Q9QX99) Transcription factor (T-... 29 0.92
TC16586 weakly similar to UP|Q93VQ9 (Q93VQ9) At1g31020/F17F8_6 (... 28 2.0
AV418955 27 3.5
TC17612 27 3.5
BP053682 27 4.6
TC14920 similar to UP|BAC92733 (BAC92733) Hd1-like protein, part... 27 6.0
>BP042557
Length = 545
Score = 77.0 bits (188), Expect = 4e-15
Identities = 50/154 (32%), Positives = 78/154 (50%), Gaps = 12/154 (7%)
Frame = +2
Query: 127 FTRILALTNVSKHA-FYIPRFCAENMFPPLGMEV---SQHLLVTDVHGEVWKFHHVCHGF 182
F + L ++ S H F +PR AE +FPPL +Q L+ D++ WKF H+ G
Sbjct: 65 FCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELIARDLNDNEWKFRHIFRGQ 244
Query: 183 AKRNVFYTSEWASFVERKKLDVGDAVVFMKNSTGKLFVGIRRKDAAEQ-------KKDEL 235
KR++ T+ W+ FV K+L GD+V+F+ N +L +GIRR + ++ D +
Sbjct: 245 PKRHLL-TTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRSQTIMPSSVLSSDSM 421
Query: 236 EKAVM-EAVKLAEENKPFEIVYYPRGDDWCDFVV 268
++ A A N F I Y PR +FV+
Sbjct: 422 HIGLLAAAAHAASTNSRFTIFYNPRASP-SEFVI 520
>AV410062
Length = 435
Score = 70.1 bits (170), Expect = 5e-13
Identities = 49/146 (33%), Positives = 71/146 (48%), Gaps = 5/146 (3%)
Frame = +3
Query: 30 VQIPKLHSRVYYFPQGHLEH-ASSSSSNAYIHSLDLQRFRPFTICIISAVDLLADPHTDE 88
V +P L SRV YFPQGH E A S++ H + P IC + V + AD TDE
Sbjct: 6 VSLPALGSRVVYFPQGHSEQVAVSTNKEVDAHIPNYPSLPPQLICQLHNVTMHADAETDE 185
Query: 89 VFAKLLLTPVTNNSCVQDPHEVPNCSNDDDVCDEVIDSFTRILALTNVSKH-AFYIPRFC 147
V+A++ L P+ Q+ E + + + F + L ++ S H F +PR
Sbjct: 186 VYAQMTLQPLN----PQEQKEAYLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRA 353
Query: 148 AENMFPPLGME---VSQHLLVTDVHG 170
AE +FPPL +Q L+ D+HG
Sbjct: 354 AEKVFPPLDFSQQPPAQELIARDLHG 431
>TC13094 similar to UP|Q94JM3 (Q94JM3) AT5g62000/mtg10_20, partial (18%)
Length = 685
Score = 66.6 bits (161), Expect = 5e-12
Identities = 32/98 (32%), Positives = 53/98 (53%), Gaps = 3/98 (3%)
Frame = +2
Query: 17 VHPQIWQTCTGAAVQIPKLHSRVYYFPQGHLEHASSSSSNAYIHSLDLQRFRPFTICIIS 76
++ ++W C G V +P+ RV+YFPQGH+E +S++ + + +C +
Sbjct: 365 LYRELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVADEHMPVYDLPSKILCRVI 544
Query: 77 AVDLLADPHTDEVFAKLLLTPVTN---NSCVQDPHEVP 111
V L A+P TDEVFA++ L P N N+ ++P P
Sbjct: 545 NVQLKAEPDTDEVFAQVTLLPEPNQDENAVEKEPPPPP 658
>TC10030 similar to UP|Q94JM3 (Q94JM3) AT5g62000/mtg10_20, partial (13%)
Length = 588
Score = 65.5 bits (158), Expect = 1e-11
Identities = 29/81 (35%), Positives = 47/81 (57%)
Frame = +3
Query: 17 VHPQIWQTCTGAAVQIPKLHSRVYYFPQGHLEHASSSSSNAYIHSLDLQRFRPFTICIIS 76
++ ++W C G V +P+ RV+YFPQGH+E +S++ + + P +C +
Sbjct: 345 LYRELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVAELHMPVYDLPPKILCRVI 524
Query: 77 AVDLLADPHTDEVFAKLLLTP 97
V L A+P TDEVFA++ L P
Sbjct: 525 NVMLKAEPDTDEVFAQVTLLP 587
>TC19318 similar to UP|Q94JM3 (Q94JM3) AT5g62000/mtg10_20, partial (23%)
Length = 585
Score = 63.2 bits (152), Expect = 6e-11
Identities = 33/87 (37%), Positives = 50/87 (56%), Gaps = 3/87 (3%)
Frame = +3
Query: 141 FYIPRFCAENMFPPLGMEV---SQHLLVTDVHGEVWKFHHVCHGFAKRNVFYTSEWASFV 197
F + R A+ PPL M +Q L+ D+HG W+F H+ G +R++ S W+ FV
Sbjct: 78 FSVLRRHADECLPPLDMSKQPPTQALVAKDLHGSEWRFRHIFLGQPRRHLLL-SGWSVFV 254
Query: 198 ERKKLDVGDAVVFMKNSTGKLFVGIRR 224
K+L GDA +F++ G+L VG+RR
Sbjct: 255 SSKRLVAGDAFIFLRGENGELRVGVRR 335
>BP049491
Length = 516
Score = 62.8 bits (151), Expect = 8e-11
Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Frame = -3
Query: 143 IPRFCAENMFPPLGMEV---SQHLLVTDVHGEVWKFHHVCHGFAKRNVFYTSEWASFVER 199
+PR AE+ PPL + SQ L+ D+HG WKF H+ G + ++ T+ W+ FV +
Sbjct: 514 VPRRAAEDCLPPLDYKQQRPSQELVAKDLHGVEWKFCHIYRG*PRWHLL-TTGWSIFVSQ 338
Query: 200 KKLDVGDAVVFMKNSTGKLFVGIRR 224
L GDAV F++ G+L +GIRR
Sbjct: 337 NNLVSGDAVSFLRGENGELRLGIRR 263
>AV409033
Length = 418
Score = 62.0 bits (149), Expect = 1e-10
Identities = 30/82 (36%), Positives = 43/82 (51%)
Frame = +3
Query: 17 VHPQIWQTCTGAAVQIPKLHSRVYYFPQGHLEHASSSSSNAYIHSLDLQRFRPFTICIIS 76
++ ++W C G V +P + S V YFPQGH E ++S IC++
Sbjct: 42 INSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKETDFIPSYPNLPSKLICMLH 221
Query: 77 AVDLLADPHTDEVFAKLLLTPV 98
V L ADP TDEV+A++ L PV
Sbjct: 222 NVALHADPETDEVYAQMTLQPV 287
>AV781081
Length = 528
Score = 52.0 bits (123), Expect = 1e-07
Identities = 19/47 (40%), Positives = 30/47 (63%)
Frame = +2
Query: 8 HQQQQQPSHVHPQIWQTCTGAAVQIPKLHSRVYYFPQGHLEHASSSS 54
H + P ++P++W C G V +P+L S YYFPQGH+E ++S+
Sbjct: 380 HCGSRFPKGINPELWHACAGPLVSLPQLGSLAYYFPQGHIEQVAAST 520
>AV408921
Length = 429
Score = 45.1 bits (105), Expect = 2e-05
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +2
Query: 17 VHPQIWQTCTGAAVQIPKLHSRVYYFPQGHLEHASSS 53
++ ++W C G V +P+ RVYYFPQGH+E +S
Sbjct: 317 LYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEAS 427
>BP043161
Length = 509
Score = 42.4 bits (98), Expect = 1e-04
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +2
Query: 9 QQQQQPSHVHPQIWQTCTGAAVQIPKLHSRVYYFPQGHLEHASSSSS 55
Q+ + ++ ++W C G V +P +RV YFPQGH E S++++
Sbjct: 314 QEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVSATTN 454
>CN825794
Length = 212
Score = 42.0 bits (97), Expect = 1e-04
Identities = 21/53 (39%), Positives = 32/53 (59%)
Frame = +2
Query: 237 KAVMEAVKLAEENKPFEIVYYPRGDDWCDFVVDGNIVDESMKIQWNPRMRVKM 289
+A++EA LA +PFE+ YYPRG +F ++V+ +M+I MR KM
Sbjct: 35 EALIEAANLAANKEPFEVAYYPRGST-PEFCAKTSLVESAMQITRRSGMRFKM 190
>AV779806
Length = 546
Score = 40.0 bits (92), Expect = 5e-04
Identities = 15/47 (31%), Positives = 29/47 (60%)
Frame = +2
Query: 9 QQQQQPSHVHPQIWQTCTGAAVQIPKLHSRVYYFPQGHLEHASSSSS 55
+++ + ++ ++ C G V +P + SRV YFPQGH E ++S++
Sbjct: 377 EEEGEKKCLNSELGHACAGPLVSLPPIGSRVVYFPQGHSEQVAASTN 517
>AV416874
Length = 256
Score = 33.9 bits (76), Expect = 0.037
Identities = 16/26 (61%), Positives = 19/26 (72%)
Frame = +2
Query: 199 RKKLDVGDAVVFMKNSTGKLFVGIRR 224
RKKL GD+VVF++ G L VGIRR
Sbjct: 2 RKKLVAGDSVVFLRAENGDLCVGIRR 79
>TC15419 similar to UP|Q9M0V3 (Q9M0V3) UV-damaged DNA binding factor-like
protein, partial (9%)
Length = 555
Score = 30.8 bits (68), Expect = 0.32
Identities = 23/76 (30%), Positives = 33/76 (43%)
Frame = +1
Query: 193 WASFVERKKLDVGDAVVFMKNSTGKLFVGIRRKDAAEQKKDELEKAVMEAVKLAEENKPF 252
W SF KK +A F+ + F+ + R E K L+ +V E K EE
Sbjct: 106 WRSFNHEKK--TAEARNFLDGDLIESFLDLNRSKMDEVSK-ALDVSVEELCKRVEELTRL 276
Query: 253 EIVYYPRGDDWCDFVV 268
VYYP + C F++
Sbjct: 277 H*VYYPHLELLCSFIL 324
>TC15020 homologue to UP|Q9QX99 (Q9QX99) Transcription factor (T-cell
leukemia, homeobox 1), partial (5%)
Length = 1304
Score = 29.3 bits (64), Expect = 0.92
Identities = 14/38 (36%), Positives = 20/38 (51%), Gaps = 2/38 (5%)
Frame = +3
Query: 3 LNQYHHQQQQQPSHVHP--QIWQTCTGAAVQIPKLHSR 38
L+++HH QQ QP+H P +W T P H+R
Sbjct: 207 LHRHHHHQQHQPNHPRPCRLLWLTHPTHLSTHPTRHTR 320
>TC16586 weakly similar to UP|Q93VQ9 (Q93VQ9) At1g31020/F17F8_6 (Thioredoxin
o) (At2g20920/F5H14.11), partial (35%)
Length = 898
Score = 28.1 bits (61), Expect = 2.0
Identities = 20/68 (29%), Positives = 31/68 (45%)
Frame = -1
Query: 60 HSLDLQRFRPFTICIISAVDLLADPHTDEVFAKLLLTPVTNNSCVQDPHEVPNCSNDDDV 119
H +LQ + T C + V+L+ + ++LLT + N + PNCS DD
Sbjct: 514 HRRNLQLGQCATKCFLIHVNLIC------CYVRVLLTELPNYRRNKLARSTPNCSEIDDR 353
Query: 120 CDEVIDSF 127
VI +F
Sbjct: 352 VQRVILNF 329
>AV418955
Length = 413
Score = 27.3 bits (59), Expect = 3.5
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3
Query: 8 HQQQQQPSHVHPQIW 22
HQQ + HVHPQ+W
Sbjct: 153 HQQPVKMDHVHPQLW 109
>TC17612
Length = 687
Score = 27.3 bits (59), Expect = 3.5
Identities = 15/46 (32%), Positives = 24/46 (51%)
Frame = +3
Query: 212 KNSTGKLFVGIRRKDAAEQKKDELEKAVMEAVKLAEENKPFEIVYY 257
K GK ++ ++KKDE E+ + E VKL + + P+ YY
Sbjct: 408 KKDDGKKDDNKKKDGGGDKKKDESEQ-IAELVKLYKAHNPYMTSYY 542
>BP053682
Length = 483
Score = 26.9 bits (58), Expect = 4.6
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 19 PQIWQTCTGAAVQIPKLHSRVYYFPQGHLEH 49
P +W +VQI +L + YY+P L H
Sbjct: 263 PWLWPMLELVSVQIKELQNLYYYWPLSQLSH 355
>TC14920 similar to UP|BAC92733 (BAC92733) Hd1-like protein, partial (15%)
Length = 645
Score = 26.6 bits (57), Expect = 6.0
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = -1
Query: 5 QYHHQQQQQPSHVHPQIWQTCTGAAVQIPKLHSRVYYFPQGHLEHASSS 53
Q H QQ+ Q + H + QTC ++V P S ++SSS
Sbjct: 306 Q*HQQQEDQHGYYHQSVSQTCL*SSVCFPHTLSSKRNVSSSRTFYSSSS 160
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.321 0.135 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,641,925
Number of Sequences: 28460
Number of extensions: 104150
Number of successful extensions: 642
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of query: 318
length of database: 4,897,600
effective HSP length: 90
effective length of query: 228
effective length of database: 2,336,200
effective search space: 532653600
effective search space used: 532653600
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Medicago: description of AC134322.19