TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC134049.15 + phase: 0 /pseudo
         (300 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV424544                                                               52  1e-07
TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-rela...    36  0.009
TC8099                                                                 30  0.38
BG662133                                                               30  0.50
BP075943                                                               28  2.5
BP039039                                                               27  3.2
TC15522                                                                27  3.2
BI421006                                                               26  9.4
TC7977 similar to UP|O48868 (O48868) 4-coumarate:CoA ligase 2, p...    26  9.4
BP049067                                                               26  9.4
TC16300 similar to UP|Q93Y11 (Q93Y11) Berberine bridge enzyme-li...    26  9.4

>AV424544 
          Length = 276

 Score = 52.0 bits (123), Expect = 1e-07
 Identities = 27/44 (61%), Positives = 33/44 (74%)
 Frame = +3

Query: 158 SSFLTSLGYAQSQSGHSLFTKIHNQKNFTVILIFVDNLILPGND 201
           SS+L  LGY QS   HSLFTK  +  +FTVIL++VD+LIL GND
Sbjct: 12  SSYLHILGYIQSAHDHSLFTKFRDA-SFTVILVYVDDLILAGND 140


>TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-related Pol
           polyprotein from transposon TNT 1-94 [Contains: Protease
           ; Reverse transcriptase ; Endonuclease] , partial (9%)
          Length = 747

 Score = 35.8 bits (81), Expect = 0.009
 Identities = 14/41 (34%), Positives = 27/41 (65%)
 Frame = +2

Query: 159 SFLTSLGYAQSQSGHSLFTKIHNQKNFTVILIFVDNLILPG 199
           SF+ SLGY +  S H  + K  +  +F ++L++VD++++ G
Sbjct: 8   SFIMSLGYNRLSSDHCTYHKRFDDNDFIILLLYVDDMLVVG 130


>TC8099 
          Length = 695

 Score = 30.4 bits (67), Expect = 0.38
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -3

Query: 130 HALNQVYTDS*SLFMVSIRSASYSLPCPSSFLTSLGYAQSQSGHSLFTK 178
           H   Q      SL+++SIR   + LPCP+S    L     + G SL T+
Sbjct: 153 HGQQQTRRAKISLYVLSIRLRGH*LPCPASLSQELWSXMFEGGGSLQTQ 7


>BG662133 
          Length = 428

 Score = 30.0 bits (66), Expect = 0.50
 Identities = 31/115 (26%), Positives = 51/115 (43%), Gaps = 4/115 (3%)
 Frame = -1

Query: 110 FIHGELDEKVYMVVPPFYSHHALNQVYTDS*SLFMVSIRSASYSLPCPSSFLTSLGYAQS 169
           FI+  +D   ++       H++ N + T   S+F  SIR    +   P+S   + GY   
Sbjct: 413 FIYVCIDGYAWLTRRTRIIHNSPNHIITVGLSIFFSSIRFICSTKRWPASLSDNNGYTFE 234

Query: 170 QSG-HSLFTKIHNQKNFTVILI---FVDNLILPGND*QKLPL*RTN*IVLCGSFL 220
             G + +   IH+    TVI+I   +V+NL+      +K    R N I  C S +
Sbjct: 233 I*GIYRVIGSIHHSIKHTVIMI*RVWVNNLLH*RKGSEKSIFNRENAISFCVSII 69


>BP075943 
          Length = 547

 Score = 27.7 bits (60), Expect = 2.5
 Identities = 10/24 (41%), Positives = 19/24 (78%)
 Frame = -3

Query: 184 NFTVILIFVDNLILPGND*QKLPL 207
           +FT +L++VD+++L GND  ++ L
Sbjct: 533 SFTALLLYVDDVLLAGNDMHEIQL 462


>BP039039 
          Length = 496

 Score = 27.3 bits (59), Expect = 3.2
 Identities = 15/49 (30%), Positives = 25/49 (50%)
 Frame = +2

Query: 129 HHALNQVYTDS*SLFMVSIRSASYSLPCPSSFLTSLGYAQSQSGHSLFT 177
           HH+L + +T S + F+  +   S+S P P  F  S G + S+     F+
Sbjct: 209 HHSLRRRFTGSGAEFIRRVTFNSFSKPLPCQFPGSGGASSSRFASRTFS 355


>TC15522 
          Length = 1383

 Score = 27.3 bits (59), Expect = 3.2
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +2

Query: 242 SWVLNGCLHPCLCLRTRLPLKSLL 265
           S ++N  L+  +CL+TR PLKS+L
Sbjct: 737 SGMINSDLNGMICLQTRQPLKSVL 808


>BI421006 
          Length = 519

 Score = 25.8 bits (55), Expect = 9.4
 Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
 Frame = -2

Query: 110 FIHGELDEKVYMVVPPFYSHHALNQVYTDS*SL-------FMVSIRSASYSLPCPSSFLT 162
           F+ G+    + ++ PP+     ++ +++DS*+L       F++ + + S   PC      
Sbjct: 437 FLAGQSA*AMLLLAPPWTCFLCMSSIHSDS*TLLLKDGLEFLIGVPNLSQLAPC-----L 273

Query: 163 SLGYAQSQSGHSLFTKIHNQ 182
            L +     GH L    H +
Sbjct: 272 QLSFQNLWEGHVLLLYRHQR 213


>TC7977 similar to UP|O48868 (O48868) 4-coumarate:CoA ligase 2, partial
           (18%)
          Length = 638

 Score = 25.8 bits (55), Expect = 9.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 48  LQD*VQVWWTHRTI 61
           LQD* ++WW HR +
Sbjct: 298 LQD*TKIWWPHRIL 339


>BP049067 
          Length = 451

 Score = 25.8 bits (55), Expect = 9.4
 Identities = 8/15 (53%), Positives = 12/15 (79%)
 Frame = +2

Query: 173 HSLFTKIHNQKNFTV 187
           HSL  K+H++KNF +
Sbjct: 239 HSLINKVHSEKNFVI 283


>TC16300 similar to UP|Q93Y11 (Q93Y11) Berberine bridge enzyme-like protein,
           partial (13%)
          Length = 550

 Score = 25.8 bits (55), Expect = 9.4
 Identities = 9/17 (52%), Positives = 13/17 (75%)
 Frame = -2

Query: 60  TI*SSPCCGVLHLDWRY 76
           T+  SP C +LHLDW++
Sbjct: 255 TVPYSPFCCLLHLDWKW 205


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.351    0.154    0.540 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,243,330
Number of Sequences: 28460
Number of extensions: 99233
Number of successful extensions: 971
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of query: 300
length of database: 4,897,600
effective HSP length: 90
effective length of query: 210
effective length of database: 2,336,200
effective search space: 490602000
effective search space used: 490602000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (22.0 bits)
S2: 55 (25.8 bits)