BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC133780.10 - phase: 0
(172 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV416122 72 4e-14
TC13577 similar to UP|Q7VK23 (Q7VK23) Alpha-1,2-fucosyltransfera... 63 3e-11
TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Ar... 48 8e-07
TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (... 46 3e-06
BP043430 46 3e-06
TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly pr... 46 4e-06
TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%) 46 4e-06
TC9068 similar to UP|SCWA_YEAST (Q04951) Probable family 17 gluc... 45 5e-06
TC8939 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetyla... 45 9e-06
TC19515 similar to UP|Q9YGK0 (Q9YGK0) Vitellogenin precursor, pa... 45 9e-06
AI967639 41 1e-04
CN825654 41 1e-04
TC8507 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetyla... 41 1e-04
TC19394 similar to UP|NSR1_YEAST (P27476) Nuclear localization s... 40 2e-04
BP034655 40 2e-04
TC13140 weakly similar to UP|RN12_HUMAN (Q9NVW2) RING finger pro... 40 2e-04
CB826779 40 3e-04
TC14766 similar to UP|Q7XXR8 (Q7XXR8) Nascent polypeptide associ... 40 3e-04
BI419972 39 4e-04
AV418628 39 5e-04
>AV416122
Length = 414
Score = 72.4 bits (176), Expect = 4e-14
Identities = 41/122 (33%), Positives = 62/122 (50%)
Frame = +3
Query: 5 ETNNHEEPTFPTKRKPDQEETHHLPNKNPKLTSTTTVDQETELPTTVNSSSDAVPNNEPE 64
E N+H+EPTFP+KR P + P K PKL +T P S+D N+
Sbjct: 66 ELNHHQEPTFPSKRHPVPDPQEQPPTKAPKLAAT---------PEPNPDSNDNNNNHPAV 218
Query: 65 NNTDDDDEDDEDEENSDEEPVVDRKGKGIMRDDKGKGKMIEEEDEDDDDSDDSDDSDDDS 124
+ TDD ++ N D EP D + +G +D + K E+E+EDD+D D + +++ D
Sbjct: 219 SATDDCSSQPKEAANDDNEPDNDVQFEGEEEEDDEEDKEEEDEEEDDEDDDSNGEAEVDR 398
Query: 125 DG 126
G
Sbjct: 399 KG 404
>TC13577 similar to UP|Q7VK23 (Q7VK23) Alpha-1,2-fucosyltransferase, partial
(8%)
Length = 573
Score = 62.8 bits (151), Expect = 3e-11
Identities = 30/34 (88%), Positives = 32/34 (93%)
Frame = +2
Query: 132 DSDFSDDPLAEVDLDNILPSRTRRRTAQSGVRIS 165
DSDFSDDPLAEVDL+NILPSRTRRR AQ GVRI+
Sbjct: 2 DSDFSDDPLAEVDLNNILPSRTRRRAAQPGVRIA 103
>TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Arabidopsis
thaliana;}, partial (44%)
Length = 700
Score = 48.1 bits (113), Expect = 8e-07
Identities = 23/77 (29%), Positives = 42/77 (53%), Gaps = 11/77 (14%)
Frame = +2
Query: 60 NNEPENNTDDDDEDDEDEENSDEEPVVDRKGKGIMRDDK-----------GKGKMIEEED 108
N+ + D+DD+DD ++++ DE+ D G G DD+ G+G + +D
Sbjct: 2 NSRTRMSGDEDDDDDGEDDDGDEDDDDDAPGGGDDDDDEEDEEEEGGVEGGRGGGGDPDD 181
Query: 109 EDDDDSDDSDDSDDDSD 125
+DDDD DD ++ +++ D
Sbjct: 182 DDDDDDDDDEEEEEEED 232
Score = 45.4 bits (106), Expect = 5e-06
Identities = 26/79 (32%), Positives = 43/79 (53%), Gaps = 1/79 (1%)
Frame = +2
Query: 61 NEPENNTDDDDEDDEDEENSDEEPVVDRKGKGIMRDDKGKGKMIEEEDE-DDDDSDDSDD 119
++ +++ DDDDE++E+EE+ E +V R+ D++ EEDE DD+D+DD +
Sbjct: 176 DDDDDDDDDDDEEEEEEEDLGTEYLV-RRTVAAAEDEEASSDFEPEEDEGDDNDNDDGEK 352
Query: 120 SDDDSDGNVSGSDSDFSDD 138
+ S S D DD
Sbjct: 353 AGVPSKRKRSDKDGSGDDD 409
Score = 45.1 bits (105), Expect = 7e-06
Identities = 19/77 (24%), Positives = 45/77 (57%), Gaps = 6/77 (7%)
Frame = +2
Query: 53 SSSDAVPNNEPENNTDDDDEDDEDEEN------SDEEPVVDRKGKGIMRDDKGKGKMIEE 106
+S + +E +++ +DD+ DED+++ D++ D + +G + +G G ++
Sbjct: 2 NSRTRMSGDEDDDDDGEDDDGDEDDDDDAPGGGDDDDDEEDEEEEGGVEGGRGGGGDPDD 181
Query: 107 EDEDDDDSDDSDDSDDD 123
+D+DDDD D+ ++ ++D
Sbjct: 182 DDDDDDDDDEEEEEEED 232
Score = 43.9 bits (102), Expect = 1e-05
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Frame = +2
Query: 62 EPENNTDDDDEDDEDEENSDE--EPVVDRKGKGIMRDDKGKGKMIEEEDE----DDDDSD 115
+P+++ DDDD+DDE+EE ++ + R+ D++ EEDE D+DD +
Sbjct: 170 DPDDDDDDDDDDDEEEEEEEDLGTEYLVRRTVAAAEDEEASSDFEPEEDEGDDNDNDDGE 349
Query: 116 DSDDSDDDSDGNVSGSDSDFSDD 138
+ + GS D SDD
Sbjct: 350 KAGVPSKRKRSDKDGSGDDDSDD 418
Score = 43.9 bits (102), Expect = 1e-05
Identities = 24/81 (29%), Positives = 45/81 (54%), Gaps = 7/81 (8%)
Frame = +2
Query: 49 TTVNSSSDAVPNNEPENNTDDDDED-------DEDEENSDEEPVVDRKGKGIMRDDKGKG 101
T ++ D + E ++ +DDD+D D+DEE+ +EE V+ G+G G G
Sbjct: 11 TRMSGDEDDDDDGEDDDGDEDDDDDAPGGGDDDDDEEDEEEEGGVEG-GRG------GGG 169
Query: 102 KMIEEEDEDDDDSDDSDDSDD 122
+++D+DDDD ++ ++ +D
Sbjct: 170 DPDDDDDDDDDDDEEEEEEED 232
Score = 41.2 bits (95), Expect = 1e-04
Identities = 24/71 (33%), Positives = 31/71 (42%)
Frame = +2
Query: 102 KMIEEEDEDDDDSDDSDDSDDDSDGNVSGSDSDFSDDPLAEVDLDNILPSRTRRRTAQSG 161
+M +ED+DDD DD D DDD D G D D +D E ++ G
Sbjct: 14 RMSGDEDDDDDGEDDDGDEDDDDDAPGGGDDDDDEEDEEEEGGVE--------------G 151
Query: 162 VRISGGTPNAD 172
R GG P+ D
Sbjct: 152 GRGGGGDPDDD 184
Score = 30.0 bits (66), Expect = 0.22
Identities = 21/82 (25%), Positives = 39/82 (46%), Gaps = 1/82 (1%)
Frame = +2
Query: 42 DQETELPTTVNSSSDAVPNNEPENNTDDDDEDDE-DEENSDEEPVVDRKGKGIMRDDKGK 100
++E +L T + E ++D + E+DE D+ ++D D + G+ K
Sbjct: 218 EEEEDLGTEYLVRRTVAAAEDEEASSDFEPEEDEGDDNDND-----DGEKAGV----PSK 370
Query: 101 GKMIEEEDEDDDDSDDSDDSDD 122
K +++ DDDSDD + D+
Sbjct: 371 RKRSDKDGSGDDDSDDGGEDDE 436
>TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (SPBC3D6.14C
protein) (Fragment), partial (15%)
Length = 543
Score = 46.2 bits (108), Expect = 3e-06
Identities = 22/66 (33%), Positives = 35/66 (52%)
Frame = +3
Query: 81 DEEPVVDRKGKGIMRDDKGKGKMIEEEDEDDDDSDDSDDSDDDSDGNVSGSDSDFSDDPL 140
D E D K + D++ + EEED++D+D DD DD DDD + D D ++
Sbjct: 201 DPEIYPDGPPKPVQTDNEEEEDDDEEEDDEDEDDDDDDDDDDDGEEEEDDDDDDEEEEGS 380
Query: 141 AEVDLD 146
EV+++
Sbjct: 381 EEVEVE 398
Score = 45.4 bits (106), Expect = 5e-06
Identities = 25/75 (33%), Positives = 39/75 (51%)
Frame = +3
Query: 58 VPNNEPENNTDDDDEDDEDEENSDEEPVVDRKGKGIMRDDKGKGKMIEEEDEDDDDSDDS 117
V + E DD++EDDEDE++ D++ DD G EE+EDDDD D+
Sbjct: 237 VQTDNEEEEDDDEEEDDEDEDDDDDD------------DDDDDG----EEEEDDDDDDEE 368
Query: 118 DDSDDDSDGNVSGSD 132
++ ++ + V G D
Sbjct: 369 EEGSEEVE--VEGKD 407
Score = 36.2 bits (82), Expect = 0.003
Identities = 24/98 (24%), Positives = 40/98 (40%)
Frame = +3
Query: 29 PNKNPKLTSTTTVDQETELPTTVNSSSDAVPNNEPENNTDDDDEDDEDEENSDEEPVVDR 88
P+ PK T ++E + D ++E E++ DDDD+DD+ E
Sbjct: 216 PDGPPKPVQTDNEEEEDD---------DEEEDDEDEDDDDDDDDDDDGE----------- 335
Query: 89 KGKGIMRDDKGKGKMIEEEDEDDDDSDDSDDSDDDSDG 126
EEED+DDDD ++ + + +G
Sbjct: 336 ----------------EEEDDDDDDEEEEGSEEVEVEG 401
>BP043430
Length = 493
Score = 46.2 bits (108), Expect = 3e-06
Identities = 19/48 (39%), Positives = 29/48 (59%)
Frame = -1
Query: 87 DRKGKGIMRDDKGKGKMIEEEDEDDDDSDDSDDSDDDSDGNVSGSDSD 134
D +G G DD+G ++EEDE+++DS+D DD + + N DSD
Sbjct: 376 DNEGSGKDNDDEGNDNEVDEEDEEEEDSNDDDDGSESEEFNDDEEDSD 233
Score = 35.0 bits (79), Expect = 0.007
Identities = 20/59 (33%), Positives = 32/59 (53%)
Frame = -1
Query: 60 NNEPENNTDDDDEDDEDEENSDEEPVVDRKGKGIMRDDKGKGKMIEEEDEDDDDSDDSD 118
+N+ E N ++ DE+DE+EE+S++ DD G E +E +DD +DSD
Sbjct: 355 DNDDEGNDNEVDEEDEEEEDSND-------------DDDG-----SESEEFNDDEEDSD 233
Score = 30.8 bits (68), Expect = 0.13
Identities = 16/70 (22%), Positives = 32/70 (44%)
Frame = -1
Query: 46 ELPTTVNSSSDAVPNNEPENNTDDDDEDDEDEENSDEEPVVDRKGKGIMRDDKGKGKMIE 105
++P + + + ++ +D++ D+EDEE D +D G E
Sbjct: 403 KIPVKASGDDNEGSGKDNDDEGNDNEVDEEDEEEEDS-------------NDDDDGSESE 263
Query: 106 EEDEDDDDSD 115
E ++D++DSD
Sbjct: 262 EFNDDEEDSD 233
>TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly protein
1-like protein 3, partial (81%)
Length = 1298
Score = 45.8 bits (107), Expect = 4e-06
Identities = 39/131 (29%), Positives = 51/131 (38%), Gaps = 13/131 (9%)
Frame = +2
Query: 25 THHLPNKNPKLTSTTTVDQETELPTTVNSSSDAVPN--NEPENNTDDDDEDDEDEENSDE 82
T + K PK S T P T ++ N N P+ DDDD DD+ E
Sbjct: 503 TQKILKKKPKKGSKNTK------PITKTEKCESFFNFFNPPQVPEDDDDIDDDAVEELQN 664
Query: 83 EPVVDRKGKGIMRDD---------KGKGKMIEEED--EDDDDSDDSDDSDDDSDGNVSGS 131
D +RD G+ + + ED EDD+D D+ +D DDD D
Sbjct: 665 LMEHDYDIGSTIRDKIIPHAVSWFTGEAEQSDFEDIEEDDEDGDEDEDEDDDDDEEEEDD 844
Query: 132 DSDFSDDPLAE 142
D D DD E
Sbjct: 845 DDDDEDDEEGE 877
Score = 41.6 bits (96), Expect = 7e-05
Identities = 27/109 (24%), Positives = 50/109 (45%)
Frame = +2
Query: 23 EETHHLPNKNPKLTSTTTVDQETELPTTVNSSSDAVPNNEPENNTDDDDEDDEDEENSDE 82
EE +L + + ST ++ +P V+ + ++ E+ +DD++ DEDE+ D+
Sbjct: 650 EELQNLMEHDYDIGSTI---RDKIIPHAVSWFTGEAEQSDFEDIEEDDEDGDEDEDEDDD 820
Query: 83 EPVVDRKGKGIMRDDKGKGKMIEEEDEDDDDSDDSDDSDDDSDGNVSGS 131
+ +EE+EDDDD D+ D+ + + SGS
Sbjct: 821 D---------------------DEEEEDDDDDDEDDEEGEGKSKSKSGS 904
Score = 33.9 bits (76), Expect = 0.015
Identities = 22/69 (31%), Positives = 30/69 (42%), Gaps = 3/69 (4%)
Frame = +2
Query: 44 ETELPTTVNSSSDAVPNNEPENNTDDDDE---DDEDEENSDEEPVVDRKGKGIMRDDKGK 100
E E + D +E E+ DDDDE DD+D++ DEE K K + GK
Sbjct: 743 EAEQSDFEDIEEDDEDGDEDEDEDDDDDEEEEDDDDDDEDDEEGEGKSKSKSGSKARPGK 922
Query: 101 GKMIEEEDE 109
+ E E
Sbjct: 923 DQPTERPPE 949
>TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%)
Length = 1008
Score = 45.8 bits (107), Expect = 4e-06
Identities = 24/74 (32%), Positives = 41/74 (54%), Gaps = 7/74 (9%)
Frame = -2
Query: 53 SSSDAVPNNEP-------ENNTDDDDEDDEDEENSDEEPVVDRKGKGIMRDDKGKGKMIE 105
S+S P P EN D++DED ED+E+ D++ D + D++ +G +E
Sbjct: 494 SNSKKAPEGGPGAGAGPEENGEDEEDEDGEDQEDDDDDDEDDDEEDDGGEDEEEEG--VE 321
Query: 106 EEDEDDDDSDDSDD 119
EED +D++ D+ D+
Sbjct: 320 EEDNEDEEEDEEDE 279
Score = 44.3 bits (103), Expect = 1e-05
Identities = 35/147 (23%), Positives = 59/147 (39%), Gaps = 31/147 (21%)
Frame = -2
Query: 41 VDQETELPTTVNSSSDAVPNNEPENNTDDDDEDDEDEEN---SDEEPVVDRKGKGIMRDD 97
++ T T + S D + E E+ DD+ ++D+D + EE + G G +
Sbjct: 683 INMATTKGETKSQSEDKQHDAEGEDGNDDEGDEDDDGDGPFGEGEEDLSSEDGAGYGNNS 504
Query: 98 KGK--------------------GKMIEEEDEDDDDSDDSDDSDDDSDGNVSGSD----- 132
K G+ E+ED +D + DD DD DDD + + G D
Sbjct: 503 NNKSNSKKAPEGGPGAGAGPEENGEDEEDEDGEDQEDDDDDDEDDDEEDD-GGEDEEEEG 327
Query: 133 ---SDFSDDPLAEVDLDNILPSRTRRR 156
D D+ E D + + P + R++
Sbjct: 326 VEEEDNEDEEEDEEDEEALQPPKKRKK 246
>TC9068 similar to UP|SCWA_YEAST (Q04951) Probable family 17 glucosidase
SCW10 precursor (Soluble cell wall protein 10) ,
partial (6%)
Length = 1209
Score = 45.4 bits (106), Expect = 5e-06
Identities = 21/60 (35%), Positives = 31/60 (51%)
Frame = +2
Query: 75 EDEENSDEEPVVDRKGKGIMRDDKGKGKMIEEEDEDDDDSDDSDDSDDDSDGNVSGSDSD 134
E ++ + ++ G R K +++D+DDDD DD DD DDD DG+ DSD
Sbjct: 2 EQQQQQQQLTKINTAPSGFKRLFSPKPDDDDDDDDDDDDDDDDDDDDDDDDGDKKQPDSD 181
Score = 39.7 bits (91), Expect = 3e-04
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +2
Query: 105 EEEDEDDDDSDDSDDSDDDSDGNVSGSDS 133
+++D+DDDD DD DD DDD D SD+
Sbjct: 98 DDDDDDDDDDDDDDDDDDDGDKKQPDSDT 184
Score = 38.5 bits (88), Expect = 6e-04
Identities = 22/83 (26%), Positives = 33/83 (39%)
Frame = +2
Query: 43 QETELPTTVNSSSDAVPNNEPENNTDDDDEDDEDEENSDEEPVVDRKGKGIMRDDKGKGK 102
Q+ + T +N++ DDDD+DD+D+++ D
Sbjct: 11 QQQQQLTKINTAPSGFKRLFSPKPDDDDDDDDDDDDDDD--------------------- 127
Query: 103 MIEEEDEDDDDSDDSDDSDDDSD 125
D+DDDD DD D DSD
Sbjct: 128 -----DDDDDDDDDGDKKQPDSD 181
Score = 37.4 bits (85), Expect = 0.001
Identities = 15/31 (48%), Positives = 18/31 (57%)
Frame = +2
Query: 107 EDEDDDDSDDSDDSDDDSDGNVSGSDSDFSD 137
+D+DDDD DD DD DDD D + D D
Sbjct: 83 DDDDDDDDDDDDDDDDDDDDDDDDGDKKQPD 175
Score = 34.3 bits (77), Expect = 0.012
Identities = 16/29 (55%), Positives = 16/29 (55%)
Frame = +2
Query: 110 DDDDSDDSDDSDDDSDGNVSGSDSDFSDD 138
DDDD DD DD DDD D D D DD
Sbjct: 83 DDDDDDDDDDDDDDDD-----DDDDDDDD 154
Score = 28.9 bits (63), Expect = 0.50
Identities = 12/43 (27%), Positives = 23/43 (52%)
Frame = +2
Query: 48 PTTVNSSSDAVPNNEPENNTDDDDEDDEDEENSDEEPVVDRKG 90
P + D +++ +++ DDDD+DD D++ D + KG
Sbjct: 74 PKPDDDDDDDDDDDDDDDDDDDDDDDDGDKKQPDSDTGTALKG 202
Score = 25.8 bits (55), Expect = 4.2
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +2
Query: 34 KLTSTTTVDQETELPTTVNSSSDAVPNNEPENNTDDDDEDDEDE 77
+LT T + + D +++ +++ DDDD+DD+D+
Sbjct: 23 QLTKINTAPSGFKRLFSPKPDDDDDDDDDDDDDDDDDDDDDDDD 154
Score = 25.4 bits (54), Expect = 5.5
Identities = 9/35 (25%), Positives = 20/35 (56%)
Frame = +2
Query: 60 NNEPENNTDDDDEDDEDEENSDEEPVVDRKGKGIM 94
+++ +++ DDDD+DD+D + + KG +
Sbjct: 104 DDDDDDDDDDDDDDDDDGDKKQPDSDTGTALKGTL 208
>TC8939 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetylase
HD2-P39, partial (27%)
Length = 593
Score = 44.7 bits (104), Expect = 9e-06
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 22/139 (15%)
Frame = +3
Query: 5 ETNNHEEPTFPTKRKPDQEETHHLPNKN--PKLTSTTTVDQETELPTTVNSSSDAV---- 58
E+ +EP + + DQ+ N+ P+++ +D+E EL + NS + +V
Sbjct: 183 ESKKDKEPVVLSLKVGDQKFVLGTLNREKIPQVSLELVLDREFEL--SHNSKTASVHFCG 356
Query: 59 -----PNNEPENNTDDDDEDDEDEENSDE--EPVV---DRKGKGIMRDDKGKG------K 102
P +E E++ D DE DED + E +PV+ + K G + D G K
Sbjct: 357 YKAYYPADESEDDFSDSDESDEDIPLNAENGKPVIKAEELKVTGSKKADAKSGASAKQVK 536
Query: 103 MIEEEDEDDDDSDDSDDSD 121
+I+ + +++DDSDD DD D
Sbjct: 537 VIDPKKDEEDDSDDEDDED 593
Score = 27.3 bits (59), Expect = 1.4
Identities = 10/16 (62%), Positives = 13/16 (80%)
Frame = +3
Query: 108 DEDDDDSDDSDDSDDD 123
DE +DD DSD+SD+D
Sbjct: 378 DESEDDFSDSDESDED 425
>TC19515 similar to UP|Q9YGK0 (Q9YGK0) Vitellogenin precursor, partial (3%)
Length = 504
Score = 44.7 bits (104), Expect = 9e-06
Identities = 30/102 (29%), Positives = 49/102 (47%), Gaps = 23/102 (22%)
Frame = +3
Query: 60 NNEPENNTDDDDEDDEDEENSDEEPVVDRKGKG-------IMRDDKGKGKMIEEEDEDD- 111
+++P++ +D+EDD+D+++ D+E + G G + DD I++ED D
Sbjct: 63 DSDPDDAESEDEEDDDDDDDGDDEDPLLGPGLGRESDSDDMSHDDYDSASDIDDEDADFI 242
Query: 112 -DDSD------------DSDDSDDDSD--GNVSGSDSDFSDD 138
DD D D D+ DDDS + S D DF D+
Sbjct: 243 LDDLDFDGGTGLLEIVGDRDEDDDDSQELESASSDDEDFDDN 368
Score = 44.3 bits (103), Expect = 1e-05
Identities = 36/107 (33%), Positives = 51/107 (47%), Gaps = 29/107 (27%)
Frame = +3
Query: 48 PTTVNSSSDAVPNNEPENNTDDDDEDDED---------EENSDE---------EPVVDRK 89
PT +S D + + E++ DDDD DDED E +SD+ + D
Sbjct: 51 PTDDDSDPDDAESEDEEDDDDDDDGDDEDPLLGPGLGRESDSDDMSHDDYDSASDIDDED 230
Query: 90 GKGIMRD---DKGKG--KMIEEEDEDDDDSDD-----SDDSD-DDSD 125
I+ D D G G +++ + DEDDDDS + SDD D DD+D
Sbjct: 231 ADFILDDLDFDGGTGLLEIVGDRDEDDDDSQELESASSDDEDFDDND 371
Score = 37.7 bits (86), Expect = 0.001
Identities = 28/89 (31%), Positives = 35/89 (38%), Gaps = 17/89 (19%)
Frame = +3
Query: 69 DDDEDDEDEENSDEEPVVDRKGKGIMRDDKGKGKMIEEEDEDDDDSDDSD---------- 118
DDD D +D E+ DEE +D+DDDD DD D
Sbjct: 57 DDDSDPDDAESEDEE-----------------------DDDDDDDGDDEDPLLGPGLGRE 167
Query: 119 -DSDD------DSDGNVSGSDSDFSDDPL 140
DSDD DS ++ D+DF D L
Sbjct: 168 SDSDDMSHDDYDSASDIDDEDADFILDDL 254
Score = 33.9 bits (76), Expect = 0.015
Identities = 18/49 (36%), Positives = 25/49 (50%), Gaps = 6/49 (12%)
Frame = +3
Query: 105 EEEDEDDDDSDDSDDSDDDSD------GNVSGSDSDFSDDPLAEVDLDN 147
+ E ED++D DD DD DD+ G S SD DD + D+D+
Sbjct: 78 DAESEDEEDDDDDDDGDDEDPLLGPGLGRESDSDDMSHDDYDSASDIDD 224
>AI967639
Length = 335
Score = 41.2 bits (95), Expect = 1e-04
Identities = 32/99 (32%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Frame = +1
Query: 65 NNTDDDDEDDEDEENSDEEPVVDRKGKGIMRDDKGKGKMIEEEDEDDDDSDDSDDS-DDD 123
+++ + DE+DE+E+ DE +E+E+EDDDD DD D S +D
Sbjct: 85 SSSSEGDEEDEEEDQGDEYN-------------------LEDEEEDDDDDDDDDLSISED 207
Query: 124 SDGNVSGSDSDFSDDPLAEVDLDNILPSRTRRRTAQSGV 162
SD SD P LP RTRR T + V
Sbjct: 208 SD----------SDKPRKVKQ----LPGRTRRETKRRSV 282
>CN825654
Length = 580
Score = 41.2 bits (95), Expect = 1e-04
Identities = 26/62 (41%), Positives = 31/62 (49%), Gaps = 4/62 (6%)
Frame = +2
Query: 70 DDEDDEDEENSDEEPVVDRKG--KGIMRDDKGKGKMIEEEDEDDDDSDDSDDS--DDDSD 125
DDE+D EE +EEPVV G K KG G + DDD+ D D+ DD D
Sbjct: 227 DDENDGGEEQEEEEPVVSFAGKKKPSKGSKKGGGSLFNAAAFDDDNDGDVMDNSVDDGRD 406
Query: 126 GN 127
GN
Sbjct: 407 GN 412
>TC8507 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetylase
HD2-P39, partial (40%)
Length = 620
Score = 40.8 bits (94), Expect = 1e-04
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Frame = +3
Query: 105 EEEDEDDDDSDDSDDSD---DDSDGNVSGSDSDFSDD--PLAEVDLDNILPSRTRRRTAQ 159
+EED+ DD+ D+ DDSD DD+D + SDSD +D+ P+ + D + + +T
Sbjct: 3 DEEDDSDDEDDEDDDSDEEMDDADSDSDESDSDDTDEETPVKKADQGKKRANDSALKTPV 182
Query: 160 SGVRISGGTP 169
S + TP
Sbjct: 183 STKKAKNITP 212
Score = 37.7 bits (86), Expect = 0.001
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Frame = +3
Query: 64 ENNTDDDDEDDEDEENSDEEPVVDRKGKGIMRDDKGKGKMIEEEDEDDDDSDDSDDSDDD 123
+ D DDEDDED++ SDEE +++ D D D+S DSDD+D++
Sbjct: 3 DEEDDSDDEDDEDDD-SDEE--------------------MDDADSDSDES-DSDDTDEE 116
Query: 124 S------DGNVSGSDSDFSDDPLAEVDLDNILPSRT 153
+ G +DS P++ NI P +T
Sbjct: 117 TPVKKADQGKKRANDSALK-TPVSTKKAKNITPEKT 221
Score = 35.8 bits (81), Expect = 0.004
Identities = 18/65 (27%), Positives = 32/65 (48%)
Frame = +3
Query: 107 EDEDDDDSDDSDDSDDDSDGNVSGSDSDFSDDPLAEVDLDNILPSRTRRRTAQSGVRISG 166
++EDD D +D +D D D + + + SDSD SD + + + ++R S ++
Sbjct: 3 DEEDDSDDEDDEDDDSDEEMDDADSDSDESDSDDTDEETPVKKADQGKKRANDSALKTPV 182
Query: 167 GTPNA 171
T A
Sbjct: 183 STKKA 197
>TC19394 similar to UP|NSR1_YEAST (P27476) Nuclear localization sequence
binding protein (P67), partial (6%)
Length = 590
Score = 40.0 bits (92), Expect = 2e-04
Identities = 22/78 (28%), Positives = 39/78 (49%)
Frame = +1
Query: 50 TVNSSSDAVPNNEPENNTDDDDEDDEDEENSDEEPVVDRKGKGIMRDDKGKGKMIEEEDE 109
T +SS +++ N+ + + E DEE+ +E V R DD+ + + DE
Sbjct: 70 TQSSSDESLSNSSSSSEEEQQIEQINDEEDEEELEAVARPASS--GDDEVAEDIPPDSDE 243
Query: 110 DDDDSDDSDDSDDDSDGN 127
D ++D+DD DD+ G+
Sbjct: 244 DPAAAEDADDDDDEQGGD 297
>BP034655
Length = 517
Score = 40.0 bits (92), Expect = 2e-04
Identities = 18/53 (33%), Positives = 33/53 (61%)
Frame = +1
Query: 67 TDDDDEDDEDEENSDEEPVVDRKGKGIMRDDKGKGKMIEEEDEDDDDSDDSDD 119
+DDD+E++E+EE +EE +++ + + EEEDE+DD+ D+ +D
Sbjct: 133 SDDDEEEEEEEEEEEEE------------EEEEEEEEEEEEDEEDDEEDEDED 255
Score = 32.7 bits (73), Expect = 0.034
Identities = 10/44 (22%), Positives = 28/44 (62%)
Frame = +1
Query: 92 GIMRDDKGKGKMIEEEDEDDDDSDDSDDSDDDSDGNVSGSDSDF 135
G+ DD+ + + EEE+E++++ ++ ++ ++D + + D D+
Sbjct: 127 GLSDDDEEEEEEEEEEEEEEEEEEEEEEEEEDEEDDEEDEDEDY 258
Score = 32.3 bits (72), Expect = 0.045
Identities = 22/113 (19%), Positives = 46/113 (40%), Gaps = 5/113 (4%)
Frame = +1
Query: 42 DQETELPTTVNSSSDAVPNNEPENNTDDDDEDDEDEENSDEEPVV--DRKGKGIMRD--- 96
D + E + E E ++D+EDDE++E+ D PV R + ++
Sbjct: 136 DDDEEEEEEEEEEEEEEEEEEEEEEEEEDEEDDEEDEDEDYIPVAPSHRVSPNVHQNPTS 315
Query: 97 DKGKGKMIEEEDEDDDDSDDSDDSDDDSDGNVSGSDSDFSDDPLAEVDLDNIL 149
D + +I + ++ + +D + +G S + L D+D ++
Sbjct: 316 DSVEVILIPDSEQQNYSEEDGNKRRRIEEGEAPTSSLGSQGNELTGTDIDGLV 474
Score = 25.4 bits (54), Expect = 5.5
Identities = 28/128 (21%), Positives = 48/128 (36%), Gaps = 20/128 (15%)
Frame = +1
Query: 27 HLPNKNPKLTSTTTVDQETELPTTVNSSSDAVPNNEPENNTDDDDEDDED---------- 76
HL + L+ ++E E + E E+ DD++++DED
Sbjct: 106 HLTAADFGLSDDDEEEEEEEEEEEEEEEEEEEEEEEEEDEEDDEEDEDEDYIPVAPSHRV 285
Query: 77 ------EENSDEEPVV---DRKGKGIMRDDKGKGKMIEEEDEDDDDSDDSDDSDDDSDGN 127
SD V+ D + + +D K + IEE ++ S S GN
Sbjct: 286 SPNVHQNPTSDSVEVILIPDSEQQNYSEEDGNKRRRIEE--------GEAPTSSLGSQGN 441
Query: 128 -VSGSDSD 134
++G+D D
Sbjct: 442 ELTGTDID 465
>TC13140 weakly similar to UP|RN12_HUMAN (Q9NVW2) RING finger protein 12
(LIM domain interacting RING finger protein) (RING
finger LIM domain-binding protein) (R-LIM) (NY-REN-43
antigen), partial (4%)
Length = 526
Score = 40.0 bits (92), Expect = 2e-04
Identities = 22/75 (29%), Positives = 42/75 (55%)
Frame = -1
Query: 60 NNEPENNTDDDDEDDEDEENSDEEPVVDRKGKGIMRDDKGKGKMIEEEDEDDDDSDDSDD 119
N + N DDDD+D + NS V+ + ++ + +G+ +E D+D ++ +SDD
Sbjct: 358 NAAEKKNVDDDDDDTTN--NSQSMLVIFSR---LIGESSTRGE--DEGDDDGEEESNSDD 200
Query: 120 SDDDSDGNVSGSDSD 134
+D+ +D ++ G D D
Sbjct: 199 ADETADEDMDGGDGD 155
>CB826779
Length = 469
Score = 39.7 bits (91), Expect = 3e-04
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 8/100 (8%)
Frame = +1
Query: 46 ELPTTVNSSSDAVPNNEPENNTDD--------DDEDDEDEENSDEEPVVDRKGKGIMRDD 97
E P + N+S P + ++DD DD+ + D+ PVV+
Sbjct: 58 EEPHSHNNSQAMSPGTVFDASSDDHQQLPSATDDKKKPQPQEYDDAPVVE---------- 207
Query: 98 KGKGKMIEEEDEDDDDSDDSDDSDDDSDGNVSGSDSDFSD 137
+ +E DED+DD +D +D +D + G GS S+
Sbjct: 208 ----DVHDEADEDEDDDEDDEDDEDGAQGTTEGSKQSRSE 315
Score = 32.3 bits (72), Expect = 0.045
Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 11/94 (11%)
Frame = +1
Query: 20 PDQEETHHLPNK---NPKLTSTTTVDQETELPTTVNSSSDAVPNN--------EPENNTD 68
P EE H N +P + D +LP+ + P + + D
Sbjct: 49 PSPEEPHSHNNSQAMSPGTVFDASSDDHQQLPSATDDKKKPQPQEYDDAPVVEDVHDEAD 228
Query: 69 DDDEDDEDEENSDEEPVVDRKGKGIMRDDKGKGK 102
+D++DDED+E+ ++ +G R +K K
Sbjct: 229 EDEDDDEDDEDDEDGAQGTTEGSKQSRSEKKSRK 330
>TC14766 similar to UP|Q7XXR8 (Q7XXR8) Nascent polypeptide associated
complex alpha chain, partial (58%)
Length = 600
Score = 39.7 bits (91), Expect = 3e-04
Identities = 21/57 (36%), Positives = 32/57 (55%)
Frame = +2
Query: 80 SDEEPVVDRKGKGIMRDDKGKGKMIEEEDEDDDDSDDSDDSDDDSDGNVSGSDSDFS 136
S EE + + + DD+ ++E++DEDDDD DD D+ DD N+ G + D S
Sbjct: 71 SQEELLAAHLEQQKIHDDE---PVVEDDDEDDDDEDDDDEDDD----NIEGQEGDAS 220
Score = 37.7 bits (86), Expect = 0.001
Identities = 19/71 (26%), Positives = 34/71 (47%)
Frame = +2
Query: 37 STTTVDQETELPTTVNSSSDAVPNNEPENNTDDDDEDDEDEENSDEEPVVDRKGKGIMRD 96
ST Q E + + ++EP DD+D+DDED+++ D++ + ++G D
Sbjct: 50 STAMTAQSQEELLAAHLEQQKIHDDEPVVEDDDEDDDDEDDDDEDDDNIEGQEG-----D 214
Query: 97 DKGKGKMIEEE 107
G+ K E
Sbjct: 215 ASGRSKQTRSE 247
Score = 37.0 bits (84), Expect = 0.002
Identities = 19/56 (33%), Positives = 32/56 (56%)
Frame = +2
Query: 75 EDEENSDEEPVVDRKGKGIMRDDKGKGKMIEEEDEDDDDSDDSDDSDDDSDGNVSG 130
E ++ D+EPVV+ DD +E+D+D+DD D+ DD+ + +G+ SG
Sbjct: 101 EQQKIHDDEPVVE--------DD-------DEDDDDEDDDDEDDDNIEGQEGDASG 223
Score = 28.9 bits (63), Expect = 0.50
Identities = 16/74 (21%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Frame = +2
Query: 36 TSTTTVDQETELPTTVNSSS----DAVPNNEPENNTDDDDEDDEDEENSDEEPVVDRKGK 91
T+ T QE L + + V ++ E++ D+DD+D++D+ +E + K
Sbjct: 53 TAMTAQSQEELLAAHLEQQKIHDDEPVVEDDDEDDDDEDDDDEDDDNIEGQEGDASGRSK 232
Query: 92 GIMRDDKGKGKMIE 105
+ K + M++
Sbjct: 233 QTRSEKKSRKAMLK 274
>BI419972
Length = 498
Score = 39.3 bits (90), Expect = 4e-04
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Frame = +1
Query: 106 EEDEDDDDSDDSDDSDDDSDG----NVSGSDSDFSDDPLA 141
E+DED DD DD D DDD +G G ++D DDP A
Sbjct: 355 EDDEDGDDEDDDADDDDDDEGEDYSGDEGEEADPEDDPEA 474
Score = 35.8 bits (81), Expect = 0.004
Identities = 15/45 (33%), Positives = 23/45 (50%)
Frame = +1
Query: 100 KGKMIEEEDEDDDDSDDSDDSDDDSDGNVSGSDSDFSDDPLAEVD 144
K + +D + +D +D DD DDD+D + D+S D E D
Sbjct: 319 KPAYLANKDSETEDDEDGDDEDDDADDDDDDEGEDYSGDEGEEAD 453
Score = 35.4 bits (80), Expect = 0.005
Identities = 19/73 (26%), Positives = 32/73 (43%)
Frame = +1
Query: 60 NNEPENNTDDDDEDDEDEENSDEEPVVDRKGKGIMRDDKGKGKMIEEEDEDDDDSDDSDD 119
++E E++ D DDEDD+ +++ D+ E ED D+ +++D
Sbjct: 343 DSETEDDEDGDDEDDDADDDDDD----------------------EGEDYSGDEGEEADP 456
Query: 120 SDDDSDGNVSGSD 132
DD GSD
Sbjct: 457 EDDPEANGAGGSD 495
Score = 32.3 bits (72), Expect = 0.045
Identities = 23/94 (24%), Positives = 40/94 (42%)
Frame = +1
Query: 29 PNKNPKLTSTTTVDQETELPTTVNSSSDAVPNNEPENNTDDDDEDDEDEENSDEEPVVDR 88
P N K + D P + + ++E ++ DDD +DD+D+E D
Sbjct: 265 PKLNSKDGRFSLEDLLGRKPAYLANKDSETEDDEDGDDEDDDADDDDDDEGED------- 423
Query: 89 KGKGIMRDDKGKGKMIEEEDEDDDDSDDSDDSDD 122
D+G+ E + EDD +++ + SDD
Sbjct: 424 -----YSGDEGE----EADPEDDPEANGAGGSDD 498
>AV418628
Length = 309
Score = 38.9 bits (89), Expect = 5e-04
Identities = 27/85 (31%), Positives = 35/85 (40%), Gaps = 12/85 (14%)
Frame = +2
Query: 62 EPENNTDDDDEDDEDEENSDEE-PVVDRKGKGIMRDDKGKGKMIEEEDEDDDDSDDSDDS 120
E + ++D D D SD + P V R GK + K K + D D S DS
Sbjct: 2 ESKKSSDSDSSSDSSSSGSDSDRPGVVRSGK--KKGGSKKSKKSSDSDSSSDSSSSGSDS 175
Query: 121 D-----------DDSDGNVSGSDSD 134
D D+S + SGSDSD
Sbjct: 176 DRPGVVRTGAKKDESSDSSSGSDSD 250
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.298 0.124 0.340
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,374,034
Number of Sequences: 28460
Number of extensions: 34259
Number of successful extensions: 1807
Number of sequences better than 10.0: 292
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of query: 172
length of database: 4,897,600
effective HSP length: 84
effective length of query: 88
effective length of database: 2,506,960
effective search space: 220612480
effective search space used: 220612480
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.9 bits)
S2: 52 (24.6 bits)
Medicago: description of AC133780.10