TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC133571.7 + phase: 0 
         (79 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC17167 similar to UP|SDF2_ARATH (Q93ZE8) Stromal cell-derived f...   132  1e-32
BP058306                                                               53  1e-08
TC10458                                                                26  1.2
TC14166 weakly similar to UP|Q9U929 (Q9U929) Splicing factor pTS...    25  2.6
TC10917 similar to UP|Q7M4A3 (Q7M4A3) Spermatid-specific protein...    24  4.4
AU251384                                                               24  4.4
NP459482 RAB11J [Lotus japonicus]                                      23  7.6
TC18081 similar to UP|O81249 (O81249) Globulin-1 (Fragment), par...    23  7.6
AV781306                                                               23  7.6
TC14746 weakly similar to GB|AAG21976.1|10716947|AF263377 SKP1 i...    23  9.9

>TC17167 similar to UP|SDF2_ARATH (Q93ZE8) Stromal cell-derived factor
           2-like protein precursor (SDF2-like protein), partial
           (47%)
          Length = 588

 Score =  132 bits (332), Expect = 1e-32
 Identities = 61/67 (91%), Positives = 63/67 (93%)
 Frame = +1

Query: 10  EGSGKTWKQDQRFRLQHIDTSGYFYSHDKKYSRIAGGQQEVCGVREKRADNVWLAAEGVY 69
           EGSGKTWKQDQ+ RLQHIDT GY +SHDKKYSRIAGGQQEVC VREKRADNVWLAAEGVY
Sbjct: 109 EGSGKTWKQDQKIRLQHIDTGGYLHSHDKKYSRIAGGQQEVCAVREKRADNVWLAAEGVY 288

Query: 70  LPVTESK 76
           LPVTESK
Sbjct: 289 LPVTESK 309


>BP058306 
          Length = 357

 Score = 52.8 bits (125), Expect = 1e-08
 Identities = 24/29 (82%), Positives = 25/29 (85%)
 Frame = -1

Query: 43  IAGGQQEVCGVREKRADNVWLAAEGVYLP 71
           I+GG  EVC VREKRAD VWLAAEGVYLP
Sbjct: 357 ISGGPPEVCPVREKRADQVWLAAEGVYLP 271


>TC10458 
          Length = 526

 Score = 26.2 bits (56), Expect = 1.2
 Identities = 10/18 (55%), Positives = 13/18 (71%)
 Frame = +1

Query: 59  DNVWLAAEGVYLPVTESK 76
           +NVWL   GVY+ +T SK
Sbjct: 118 ENVWLVEGGVYIQMTASK 171


>TC14166 weakly similar to UP|Q9U929 (Q9U929) Splicing factor pTSR1, partial
            (7%)
          Length = 1473

 Score = 25.0 bits (53), Expect = 2.6
 Identities = 11/30 (36%), Positives = 16/30 (52%)
 Frame = +3

Query: 45   GGQQEVCGVREKRADNVWLAAEGVYLPVTE 74
            GGQ +V  V   RA+     A G+ +PV +
Sbjct: 1134 GGQNKVAAVEAGRAEETQAMASGLAIPVID 1223


>TC10917 similar to UP|Q7M4A3 (Q7M4A3) Spermatid-specific protein T2
           precursor, partial (21%)
          Length = 589

 Score = 24.3 bits (51), Expect = 4.4
 Identities = 13/42 (30%), Positives = 18/42 (41%)
 Frame = -3

Query: 12  SGKTWKQDQRFRLQHIDTSGYFYSHDKKYSRIAGGQQEVCGV 53
           + K WK    F LQ  +  G+F          AGGQ  + G+
Sbjct: 194 TSKNWKASLSFLLQETNVFGFFG---------AGGQFRIAGI 96


>AU251384 
          Length = 364

 Score = 24.3 bits (51), Expect = 4.4
 Identities = 12/32 (37%), Positives = 18/32 (55%)
 Frame = +2

Query: 35  SHDKKYSRIAGGQQEVCGVREKRADNVWLAAE 66
           SH++ +S   G QQ V G+   R DN+ +  E
Sbjct: 263 SHERVFSTKEGVQQIVLGLYIIRGDNISVVGE 358


>NP459482 RAB11J [Lotus japonicus]
          Length = 672

 Score = 23.5 bits (49), Expect = 7.6
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +3

Query: 24  LQHIDTSGYFYSHDKKYSRIAGGQQEVCGVREKRADNVWLAAEGV 68
           LQH  + GY  S   +    A  + E CG   +++ + W   +G+
Sbjct: 525 LQHSKSEGYDVSRAHQT*SSAD*KWEECGYTRRKSRSRWAVKKGL 659


>TC18081 similar to UP|O81249 (O81249) Globulin-1 (Fragment), partial (5%)
          Length = 662

 Score = 23.5 bits (49), Expect = 7.6
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -3

Query: 45  GGQQEVCGVREKRADNVWLAAEGVYLPVTESKQ 77
           G QQ+  G  EK A  +W     V    TES+Q
Sbjct: 231 GNQQQQRGEPEKLAATIWQKQGTVATSKTESEQ 133


>AV781306 
          Length = 525

 Score = 23.5 bits (49), Expect = 7.6
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = +2

Query: 37  DKKYSRIAGGQQEVCGVREKRADN---VWL 63
           D  YS+++GG  + C +R    D+   +WL
Sbjct: 431 DATYSKLSGGMAKKCKMRSYIGDSETFIWL 520


>TC14746 weakly similar to GB|AAG21976.1|10716947|AF263377 SKP1
          interacting partner 1 {Arabidopsis thaliana;}, partial
          (62%)
          Length = 719

 Score = 23.1 bits (48), Expect = 9.9
 Identities = 10/26 (38%), Positives = 18/26 (68%)
 Frame = +2

Query: 11 GSGKTWKQDQRFRLQHIDTSGYFYSH 36
          G+GK  ++ +RFR++ +D SG  + H
Sbjct: 65 GNGKRGRRRKRFRVERVD-SGVPHQH 139


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.313    0.131    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,461,677
Number of Sequences: 28460
Number of extensions: 15155
Number of successful extensions: 45
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of query: 79
length of database: 4,897,600
effective HSP length: 55
effective length of query: 24
effective length of database: 3,332,300
effective search space: 79975200
effective search space used: 79975200
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (23.1 bits)