BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC133341.11 + phase: 0 /partial
(1497 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC10653 similar to UP|O24517 (O24517) Unconventional myosin, par... 368 e-102
BP055256 300 9e-82
AU251434 244 6e-65
AV408988 123 2e-28
AU252034 119 3e-27
AU089208 110 3e-25
AU240124 113 3e-25
TC18841 51 1e-13
TC8874 similar to PIR|T00727|T00727 myosin heavy chain PCR43 - A... 54 2e-07
BP057207 49 4e-06
BP037078 38 0.014
TC8858 homologue to UP|Q84N37 (Q84N37) Potyvirus VPg interacting... 35 0.11
TC15001 similar to UP|GLE1_YEAST (Q12315) RNA export factor GLE1... 34 0.15
TC18325 34 0.20
AU252064 33 0.33
TC14320 similar to UP|Q41111 (Q41111) Dehydrin, partial (56%) 32 0.57
TC17267 similar to PIR|T05200|T05200 myosin heavy chain F4I10.13... 32 0.97
BP030794 31 1.3
TC9443 similar to UP|Q84N37 (Q84N37) Potyvirus VPg interacting p... 31 1.3
BP081518 30 2.2
>TC10653 similar to UP|O24517 (O24517) Unconventional myosin, partial (15%)
Length = 1173
Score = 368 bits (945), Expect = e-102
Identities = 185/225 (82%), Positives = 201/225 (89%), Gaps = 13/225 (5%)
Frame = +1
Query: 1285 RTSKGVLRSGRSFGKDSPMVHWQSIIESLNTLLCTLKENFIPPVLIRKIFSQTFAFINVQ 1344
R SKGVLRSGRSFGKDSPM HWQSIIESLN LLCTLKENF+ PVLI+KIF+QTF++INVQ
Sbjct: 1 RASKGVLRSGRSFGKDSPMGHWQSIIESLNNLLCTLKENFVAPVLIQKIFTQTFSYINVQ 180
Query: 1345 LFNS-----------NGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQ 1393
LFNS NGEYVKAGLAELELWC QAKEEYAGSSWDELKHIRQAVGFLVIHQ
Sbjct: 181 LFNSLLLRRDCCTFSNGEYVKAGLAELELWCAQAKEEYAGSSWDELKHIRQAVGFLVIHQ 360
Query: 1394 KYRISYDEIVNDLCPILSVQQLCKICTLYWDDNYNTRSVSPHVLASMR--MDLDSNDAMN 1451
KYRISYDEI+NDLCPI+SVQQL +ICTLYWD NYNTRSVSP VL+SMR M DSN+A +
Sbjct: 361 KYRISYDEIINDLCPIMSVQQLYRICTLYWDANYNTRSVSPDVLSSMRVLMAEDSNNAQS 540
Query: 1452 DSFLLDDSSSIPFSVDDLSTSLQEKDFSDMKPADELLENPAFQFL 1496
DSFLLDDSSSIPFSV+DLST++QEKDFSD+KPA+ELLENPAFQFL
Sbjct: 541 DSFLLDDSSSIPFSVEDLSTAMQEKDFSDLKPAEELLENPAFQFL 675
>BP055256
Length = 523
Score = 300 bits (769), Expect = 9e-82
Identities = 148/173 (85%), Positives = 157/173 (90%)
Frame = +3
Query: 225 QKGRISGAAIRTYLLERSRVCQLSDPERNYHCFYMLCAAPAEVVKKYKLGHPRTFHYLNQ 284
QKGRISGAAIRTYLLER CQ+SDPERNYHCFYMLCAAP EVV+KYKLG+PRTFHYLNQ
Sbjct: 3 QKGRISGAAIRTYLLERFTCCQVSDPERNYHCFYMLCAAPQEVVQKYKLGNPRTFHYLNQ 182
Query: 285 SNCYELEGLDESKEYITIRRAMDVVGISIENQDAIFQVVAAILHLGNIEFVKGDEIDSSM 344
SN YELEG+DE KEY +RAMDVVGIS E Q+AIF+VVAA+LHLGNIEF KG EIDSS+
Sbjct: 183 SNXYELEGVDEFKEYCDTKRAMDVVGISSEEQEAIFRVVAAVLHLGNIEFTKGKEIDSSV 362
Query: 345 PKDEKSRFHLQTAAELFMCDANALEDSLCKRVIVTRDETITKWLDPEAAALSR 397
PKDEKS FHLQTAAELFMCDA ALEDSLCKRVIVTRDE ITKWLDPEAAALSR
Sbjct: 363 PKDEKSWFHLQTAAELFMCDAKALEDSLCKRVIVTRDENITKWLDPEAAALSR 521
>AU251434
Length = 371
Score = 244 bits (624), Expect = 6e-65
Identities = 116/123 (94%), Positives = 119/123 (96%)
Frame = +1
Query: 411 WLVDTINNSIGQDPESKSLIGVLDIYGFESFKNNSFEQFCINLTNEKLQQHFNQHVFKME 470
WLVD INNSIGQDP SKSLIGVLDIYGFESF NSFEQFCINLTNEKLQQHFNQHVFKME
Sbjct: 1 WLVDKINNSIGQDPTSKSLIGVLDIYGFESFNTNSFEQFCINLTNEKLQQHFNQHVFKME 180
Query: 471 QEEYKKEEIDWSYIEFVDNQDILDLIEKKPGGIISLLDEACMFPRSTHETFSQKLYQTFK 530
QEEYKKEEIDWSYIEFVDNQDILDLIEKKPGGII+LLDEACMFPRSTHETF+QKLYQTFK
Sbjct: 181 QEEYKKEEIDWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFK 360
Query: 531 DHK 533
+HK
Sbjct: 361 NHK 369
>AV408988
Length = 365
Score = 123 bits (308), Expect = 2e-28
Identities = 60/121 (49%), Positives = 87/121 (71%), Gaps = 1/121 (0%)
Frame = +1
Query: 211 NSSRFGKFVEIQFDQKGRISGAAIRTYLLERSRVCQLSDPERNYHCFYMLCA-APAEVVK 269
NSSRFGK +EI F + G+ISGA I+T+LLE+SRV Q ++ ER+YH FY LCA AP + +
Sbjct: 1 NSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCNEGERSYHIFYQLCAGAPPSLRE 180
Query: 270 KYKLGHPRTFHYLNQSNCYELEGLDESKEYITIRRAMDVVGISIENQDAIFQVVAAILHL 329
K L + + YL QS+CY + G+D+++E+ + A+DVV IS +QD +F ++AA+L L
Sbjct: 181 KLNLQSAQDYKYLRQSSCYSITGVDDAEEFHAVMEALDVVHISKGDQDNVFAMLAAVLWL 360
Query: 330 G 330
G
Sbjct: 361 G 363
>AU252034
Length = 305
Score = 119 bits (299), Expect = 3e-27
Identities = 60/100 (60%), Positives = 76/100 (76%), Gaps = 4/100 (4%)
Frame = +2
Query: 1238 VRKVEAKYPALLFKQQLTAYLEKIYGIIRDNLTKELTSALALCIQAPRTSKGVLRSGRS- 1296
+R+VEAKYPALLFKQQLTA+LEKIYG+IRDNL KE++ L LCIQAPRTS+ L GRS
Sbjct: 5 LRQVEAKYPALLFKQQLTAFLEKIYGMIRDNLKKEISPLLGLCIQAPRTSRQGLVKGRSH 184
Query: 1297 ---FGKDSPMVHWQSIIESLNTLLCTLKENFIPPVLIRKI 1333
+ + + HWQSI++SLN L +K N+ PP L+RK+
Sbjct: 185 ANAVAQQALIAHWQSIVKSLNNYLKIMKANYAPPFLVRKV 304
>AU089208
Length = 488
Score = 110 bits (275), Expect(2) = 3e-25
Identities = 63/143 (44%), Positives = 84/143 (58%), Gaps = 2/143 (1%)
Frame = +1
Query: 330 GNIEFVKGDEIDSSMPKDEKSRFHLQTAAELFMCDANALEDSLCKRVIVTRDETITKWLD 389
GN+ F D + + + FH+ A+L CD L+ +L R + R+E I + L
Sbjct: 10 GNVSFTVIDNENHVQAVENEGLFHV---AKLIGCDIEXLKLALSTRKMKVRNENIVQKLT 180
Query: 390 PEAAALSRDALAKIVYTRLFDWLVDTINNS--IGQDPESKSLIGVLDIYGFESFKNNSFE 447
A +RDALAK +Y LFDWLV+ IN S +G+ +S I +LDIYGFESF N FE
Sbjct: 181 LSQAVDARDALAKSIYACLFDWLVEQINXSLAVGKXRTGRS-IXILDIYGFESFNXNXFE 357
Query: 448 QFCINLTNEKLQQHFNQHVFKME 470
FCI NE LQQHFN+H+F +E
Sbjct: 358 XFCIXYANEXLQQHFNRHLFXLE 426
Score = 23.5 bits (49), Expect(2) = 3e-25
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +2
Query: 470 EQEEYKKEEIDWSYIEFVDN 489
+ EEY + IDW+ + F D+
Sbjct: 425 KHEEYXQHGIDWAKLXFXDH 484
>AU240124
Length = 300
Score = 113 bits (282), Expect = 3e-25
Identities = 50/88 (56%), Positives = 68/88 (76%)
Frame = +2
Query: 1117 LVNCVSKNIGFNHGKPIAAFTIYKCLLHWKSFEAERSSVFDRLIQMIGSAIEDQDDNALM 1176
L+ C+++++GF+ +PIAA IYKCLLHW+SFE ER+SVFDR+IQ IG AIE QD+N ++
Sbjct: 14 LIRCIAQHLGFSGNRPIAACIIYKCLLHWRSFEVERTSVFDRIIQTIGHAIETQDNNDVL 193
Query: 1177 AYWLSNTSALLFLLEQSLKTGTSTNATP 1204
AYWLSN S LL LL+++LK + P
Sbjct: 194 AYWLSNASTLLLLLQRTLKASGAAGMAP 277
>TC18841
Length = 568
Score = 51.2 bits (121), Expect(2) = 1e-13
Identities = 21/28 (75%), Positives = 24/28 (85%)
Frame = +2
Query: 87 INEIYTYTGNILIAVNPFIKLPHLYDIH 114
+N IYTYTGNILIA+ PF +LPHLYD H
Sbjct: 485 LNAIYTYTGNILIAITPFHRLPHLYDTH 568
Score = 43.5 bits (101), Expect(2) = 1e-13
Identities = 29/88 (32%), Positives = 44/88 (49%), Gaps = 3/88 (3%)
Frame = +1
Query: 1 AAVANPIVGTHVWIEDSDIAWIDGEVVGVNGEEIKVLCTS-GKTVVVKASKIYHKDTEVP 59
+A N IVG+HVW+ED + WIDGE + + + GK + + + + + E
Sbjct: 220 SAPVNIIVGSHVWVEDPALTWIDGEFHSKSAVKKSMFALGMGKQLSKISQRFFPRIHEAS 399
Query: 60 PSGVDDMT--KLAYLHEPGVLNNLRSRY 85
P G MT +PG L+NL +RY
Sbjct: 400 P-GRCGMT*QNCHICMQPGSLHNLAARY 480
>TC8874 similar to PIR|T00727|T00727 myosin heavy chain PCR43 - Arabidopsis
thaliana {Arabidopsis thaliana;} , partial (3%)
Length = 715
Score = 53.9 bits (128), Expect = 2e-07
Identities = 25/48 (52%), Positives = 35/48 (72%)
Frame = +2
Query: 1450 MNDSFLLDDSSSIPFSVDDLSTSLQEKDFSDMKPADELLENPAFQFLI 1497
++ SFLLDD SSIPFSVDD+S S+Q+ + +D+ P + EN F FL+
Sbjct: 2 VSTSFLLDDDSSIPFSVDDISKSIQQVEVADVDPPPLIRENSGFGFLL 145
>BP057207
Length = 249
Score = 49.3 bits (116), Expect = 4e-06
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = -1
Query: 502 GIISLLDEACMFPRSTHETFSQKLYQTFKDHKRFSKPKLSPSDFTICHYAGDVTYQTEYF 561
G++SLLDE FP T TF+ KL Q + F + FT+ HYAG+VTY T
Sbjct: 246 GLLSLLDEESTFPNGTDLTFADKLKQHLNSNSCFKGER--EKAFTVSHYAGEVTYDTPDS 73
Query: 562 LDKNKDYVVAEH-QSLLYASTCPF 584
+ Y + H ++L PF
Sbjct: 72 WRRTGTYCLRFHPTAILKGGPYPF 1
>BP037078
Length = 529
Score = 37.7 bits (86), Expect = 0.014
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Frame = +1
Query: 894 LEKQVEDLTLRLQLEKRLRVDVE---EAKAKENERLQSALQKMQLQFKETKVLLEKEREA 950
LE Q++D + L+ + + + E + K+ E LQ+ + +Q K L+ + E
Sbjct: 190 LESQIKDKSQELKKKDEVIAEKEKFIQDKSSTVESLQNEVASLQ-----KKGSLDAQEEV 354
Query: 951 TKKLEARVPVIQEVPAVDHALLEKLSSENEKLKTLVSSLEKKIDETEKRYEEEAKVSEE 1009
K AR +Q+ LEK + E +T V+ LEKKI + + E+ KV+EE
Sbjct: 355 GKA-HARAGELQKQVENLKRELEKQNKEKVNWETRVAELEKKIHDLNSKLEDIQKVNEE 528
>TC8858 homologue to UP|Q84N37 (Q84N37) Potyvirus VPg interacting protein
(Fragment), partial (65%)
Length = 1272
Score = 34.7 bits (78), Expect = 0.11
Identities = 29/101 (28%), Positives = 47/101 (45%), Gaps = 4/101 (3%)
Frame = +1
Query: 839 QSHCRKYLALLNFTKLKKAAIATQCAWRGKVARREL----RKLKMAARETGALQDAKNKL 894
Q C + ++ K +A + K AR L R+L ARE G L+ + K
Sbjct: 466 QESCNRIAEVVQEAIRKMEMVADEKMRMFKKARLALEACDRELADKAREAGELKTERQKK 645
Query: 895 EKQVEDLTLRLQLEKRLRVDVEEAKAKENERLQSALQKMQL 935
+ Q+E+L ++L K D+ + KA E +R LQ++ L
Sbjct: 646 KLQIEELERIVRL-KNAEADMFQLKANEAKREAERLQRIAL 765
>TC15001 similar to UP|GLE1_YEAST (Q12315) RNA export factor GLE1, partial
(4%)
Length = 988
Score = 34.3 bits (77), Expect = 0.15
Identities = 45/152 (29%), Positives = 74/152 (48%), Gaps = 9/152 (5%)
Frame = +2
Query: 871 RRELRKLKMAARETGA---------LQDAKNKLEKQVEDLTLRLQLEKRLRVDVEEAKAK 921
RR+ +LK+ ET ++++ N E QVE + RL+ E R R+ VE A
Sbjct: 359 RRKEAELKLIEEETAKRVEEAIRKRVEESLNSEEVQVE-IQRRLE-EGRKRLIVEVAVQL 532
Query: 922 ENERLQSALQKMQLQFKETKVLLEKEREATKKLEARVPVIQEVPAVDHALLEKLSSENEK 981
E E+ ++AL ++ + KE + EKE + + LE I+E A LE+ E E+
Sbjct: 533 EKEK-EAAL--IEAREKEEQARKEKE-DLDRMLEENRKKIEE--AQRREALEQQRREEER 694
Query: 982 LKTLVSSLEKKIDETEKRYEEEAKVSEERLKQ 1013
+ L +K + ++ +EE +ERL Q
Sbjct: 695 YRELEEIQRQKEEAMRRKKQEE---EQERLNQ 781
>TC18325
Length = 513
Score = 33.9 bits (76), Expect = 0.20
Identities = 27/67 (40%), Positives = 37/67 (54%), Gaps = 5/67 (7%)
Frame = +2
Query: 1436 VLASMR--MDLDS-NDAMNDSFLLDDSSSIPFSVDDLSTSLQEKDFSDM--KPADELLEN 1490
V++ MR M DS N N SFLL+ SSIPF ++++ S+ + SDM P L
Sbjct: 5 VISRMRVLMTEDSDNIPPNHSFLLEVDSSIPFLMEEMFRSMSDIRLSDMDVDPPPILRLR 184
Query: 1491 PAFQFLI 1497
FQFL+
Sbjct: 185 SDFQFLL 205
>AU252064
Length = 300
Score = 33.1 bits (74), Expect = 0.33
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Frame = +3
Query: 894 LEKQVEDLTLRLQLEKRLRVDVEEAKAKENERLQSALQKMQLQFKETKVLLE-KEREATK 952
LEK VE L LRLQ EK +R +E A + + L + + Q K+ +E E E T
Sbjct: 6 LEKDVEQLQLRLQQEKSMRNLLERAMGRASSTLSPGHRHVAGQTKDLIAEIELLEEEVTS 185
Query: 953 KLEARVPVIQEVPAVDHALLEKLSSENEKL 982
+ + + + + + +H + + S +N +
Sbjct: 186 REQHVLAMYRNI--FEHCVSQPPSEQNSSV 269
>TC14320 similar to UP|Q41111 (Q41111) Dehydrin, partial (56%)
Length = 1231
Score = 32.3 bits (72), Expect = 0.57
Identities = 42/164 (25%), Positives = 66/164 (39%), Gaps = 2/164 (1%)
Frame = +3
Query: 919 KAKENERLQSALQKMQLQFKETKVLLEKEREATKKLEARVPVIQEVPAVDHALLEKLSSE 978
K KE E+ Q + + +F++ KV E E+ KK E VDH +K S+
Sbjct: 441 KKKEEEKPQEEV--IVTEFEKVKVSEEPEK---KKEE-----------VDHEGEKKHSTL 572
Query: 979 NEKLKTLVSSLEKKIDETEKRYEEEAKVSEERLKQALDA--ESKVIQMKTAMQRLEEKFA 1036
EKL SS DE E + EE K +++ K+ + + E+ + ++ EEK
Sbjct: 573 LEKLHRSDSSSSSSSDEEEGKEGEEKKKKKKKEKKEVKSTDENTSVPVEVDPAHAEEKKG 752
Query: 1037 DIEFANHVLQKQSLSINSPVKTAVENLSTPVSEKLENGHHVAEE 1080
++ L T+ VSE H AE+
Sbjct: 753 FLDKIKEKLPGHGKKTTEEATTSPPPPPPSVSETTSTPHEGAEK 884
>TC17267 similar to PIR|T05200|T05200 myosin heavy chain F4I10.130 -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(3%)
Length = 513
Score = 31.6 bits (70), Expect = 0.97
Identities = 17/45 (37%), Positives = 25/45 (54%)
Frame = +1
Query: 1452 DSFLLDDSSSIPFSVDDLSTSLQEKDFSDMKPADELLENPAFQFL 1496
+SFLLDD SIPFS +D+ ++ D ++ + E QFL
Sbjct: 1 NSFLLDDDMSIPFSAEDIDMAIPAIDPDEIDLPAFVPEYSCAQFL 135
>BP030794
Length = 513
Score = 31.2 bits (69), Expect = 1.3
Identities = 21/57 (36%), Positives = 32/57 (55%), Gaps = 5/57 (8%)
Frame = +1
Query: 940 TKVLLEKE-----REATKKLEARVPVIQEVPAVDHALLEKLSSENEKLKTLVSSLEK 991
TK LLE++ + K+ A V IQE+ ++ LLE+ S ++KT+ SLEK
Sbjct: 208 TKALLEEDLRPELEKDLKEFLAFVEEIQELSQLELMLLEEKESVEGRIKTIEDSLEK 378
>TC9443 similar to UP|Q84N37 (Q84N37) Potyvirus VPg interacting protein
(Fragment), partial (41%)
Length = 1025
Score = 31.2 bits (69), Expect = 1.3
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Frame = +1
Query: 839 QSHCRKYLALLNFTKLKKAAIATQCAWRGKVARREL----RKLKMAARETGALQDAKNKL 894
Q C + ++ K +A + K AR L R+L ARE L+ + K
Sbjct: 91 QDACNRIAEVVQEAIRKMEMVADEKMRMFKKARLALDACDRELADKAREVAELKMERQKK 270
Query: 895 EKQVEDLTLRLQLEKRLRVDVEEAKAKENERLQSALQKM 933
+ QVE+L ++L K D+ + KA E +R LQ++
Sbjct: 271 KSQVEELEKIVRL-KNAEADMFQLKANEAKREAERLQRI 384
>BP081518
Length = 388
Score = 30.4 bits (67), Expect = 2.2
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +1
Query: 938 KETKVLLEKEREATKKLEARVPVIQEV-PAVDHALLEKLSSENEKLKTLVSSLEKKIDET 996
+ K ++++E TK +E P +E+ P DH E ++ + ++ E K +E
Sbjct: 79 RRRKNVIKEENYKTKLIELYQPEEEEL*PEADHGCNWLEYKEENEVACVEATEEPKAEEA 258
Query: 997 EKRYEEEAK 1005
E+ EEEA+
Sbjct: 259 EEEEEEEAR 285
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.318 0.133 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,117,148
Number of Sequences: 28460
Number of extensions: 304123
Number of successful extensions: 1752
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 1720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1743
length of query: 1497
length of database: 4,897,600
effective HSP length: 102
effective length of query: 1395
effective length of database: 1,994,680
effective search space: 2782578600
effective search space used: 2782578600
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Medicago: description of AC133341.11