BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC133139.8 - phase: 0
(392 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC18667 weakly similar to UP|Q9C9F2 (Q9C9F2) MtN21-like protein,... 156 6e-39
TC8070 similar to UP|Q9LQZ3 (Q9LQZ3) F10A5.28, partial (73%) 135 2e-32
TC12488 similar to UP|Q9LQZ3 (Q9LQZ3) F10A5.28, partial (47%) 108 1e-24
TC19992 similar to UP|Q8LE45 (Q8LE45) Nodulin-like protein, part... 97 5e-21
TC13120 weakly similar to UP|Q8LRB6 (Q8LRB6) Nodulin-like protei... 85 2e-17
BI419330 85 2e-17
CB828366 82 2e-16
TC16612 similar to UP|Q9SUF0 (Q9SUF0) Nodulin-like protein, part... 79 1e-15
TC16483 homologue to UP|O24091 (O24091) MtN21 protein, partial (... 76 8e-15
BF177642 75 2e-14
TC17447 weakly similar to UP|Q8L9I2 (Q8L9I2) Nodulin MtN21-like ... 65 2e-11
AV422152 64 4e-11
TC19268 similar to UP|Q9C9F2 (Q9C9F2) MtN21-like protein, partia... 63 7e-11
AV412250 63 7e-11
BP073083 62 2e-10
AW164173 42 4e-10
BI419045 59 1e-09
TC16237 weakly similar to UP|Q84TV1 (Q84TV1) Nodulin-like protei... 54 6e-08
AW163925 53 8e-08
BI420050 53 1e-07
>TC18667 weakly similar to UP|Q9C9F2 (Q9C9F2) MtN21-like protein, partial
(27%)
Length = 911
Score = 156 bits (394), Expect = 6e-39
Identities = 97/337 (28%), Positives = 161/337 (46%), Gaps = 1/337 (0%)
Frame = +3
Query: 55 HIVAAICVAPFALYFERGQAKKFNWRVWFWLFLNGFVGMTMALGLFYYGLRDTTATYSVN 114
++ ++ + P A + ER K +V F FL G G T+ LF + ATY
Sbjct: 3 YLFSSAFMIPLAYFAERKSKPKITMKVLFQAFLCGLFGATIQENLFVEAVTWAGATYPSA 182
Query: 115 FLNLVPILTFLTSIICRMENLKIGTWGGRAKCIGAIMCVGGALATSLYKGKEFYIGHHHH 174
L E L I T G+AK +G ++ + GA+ + YK E ++
Sbjct: 183 ML----------------ERLNIETKTGKAKVVGTLIGISGAMILTFYKSIEIHLWPTIV 314
Query: 175 HHHHSHHSAEISAVAAHKTHMFRGTFFLVGACCSYTAWFILQVKLVKVFPLRYWGIMLSC 234
+ A T GT G C SY+ W I+Q ++ FP Y L
Sbjct: 315 NQSKPKDVA---------TGHVWGTSLAFGTCISYSIWLIIQARMSAKFPWHYTSAALMS 467
Query: 235 VMAAIQSATIGACLNQSK-EAWRLDWNLQLITILYSGALATAATFCLLTWAIKIKGPTFP 293
VMA IQS + + W+L WN++L+T LY+G +A+ + L+ W +++KGP +
Sbjct: 468 VMACIQSTIFALGMERDNWSQWKLGWNIELLTALYTGVVASGVVWVLMAWCLRLKGPLYA 647
Query: 294 PMFNPLALVFVAISDTIILGEPLKVGTLLGMVLIIIGLYYFLWGKRNEMPRLPQTSVAAA 353
FNPL LV VAI+ ++ L E L +G+++G +LI++GLY LWGK E+ ++ +
Sbjct: 648 SAFNPLLLVIVAIAGSLFLEEKLYLGSIIGSILIVLGLYIVLWGKGKEL----KSHMEQK 815
Query: 354 ELSTSMDDQPIVSQSKAVVVPTSSPNESVHLDVDKSD 390
+ S++ +P+ + T+ + ++D+D +D
Sbjct: 816 HKNDSVEVEPL-------EIVTTKQIDGKNVDIDGND 905
>TC8070 similar to UP|Q9LQZ3 (Q9LQZ3) F10A5.28, partial (73%)
Length = 1758
Score = 135 bits (339), Expect = 2e-32
Identities = 74/232 (31%), Positives = 117/232 (49%), Gaps = 7/232 (3%)
Frame = +1
Query: 117 NLVPILTFLTSIICRMENLKIGTWGGRAKCIGAIMCVGGALATSLYKGKEFYIGHHHHHH 176
N VP +TFL + I R+E +++ G AK G + CV GA +LYKG Y +
Sbjct: 418 NSVPAITFLMAAILRIEQVRLNRKDGIAKVAGTVFCVIGASVITLYKGPTIYSPVPPLNS 597
Query: 177 HHSHH-------SAEISAVAAHKTHMFRGTFFLVGACCSYTAWFILQVKLVKVFPLRYWG 229
+ H S +S A+ + G +L+G C S++ W +LQ ++K +P R
Sbjct: 598 IITPHPQTQLLGSVSLSLGDANGKNWTLGCLYLIGHCLSWSGWLVLQAPILKKYPARLSV 777
Query: 230 IMLSCVMAAIQSATIGACLNQSKEAWRLDWNLQLITILYSGALATAATFCLLTWAIKIKG 289
+C IQ I + + +AW ++ TILY+G +A+ F + W I G
Sbjct: 778 TSYTCFFGLIQFLVIALIVERDAQAWIFHSGGEVFTILYAGVVASGIAFAVQIWCIDRGG 957
Query: 290 PTFPPMFNPLALVFVAISDTIILGEPLKVGTLLGMVLIIIGLYYFLWGKRNE 341
P F ++ P+ + VAI ++ LGE +G ++G +LI++GLY LWGK E
Sbjct: 958 PVFVAVYQPVQTLVVAIMASLALGEEFYLGGIIGAILIVVGLYLVLWGKNAE 1113
Score = 56.2 bits (134), Expect = 9e-09
Identities = 40/159 (25%), Positives = 65/159 (40%), Gaps = 2/159 (1%)
Frame = +3
Query: 22 SMLLVQIFATGMQLLSRVILVQGTYIFALIAYRHIVAAICVAPFALYFERGQAKKFNWRV 81
+ML +Q G ++SR L G YR+I+A + + PFA + E+ +
Sbjct: 132 AMLALQFGYAGFHVVSRAALNMGISKLVFPVYRNIIALLLLLPFAYFLEKKERPAITLNF 311
Query: 82 WFWLFLNGFVGMTMALGLFYYGLRDTTATYSVNFLNLVPI--LTFLTSIICRMENLKIGT 139
F FL VG+T G + GL +T+ T++ L P ++ + R +K
Sbjct: 312 LFQFFLLALVGITANQGFYLLGLDNTSPTFAFGHTELCPSHHISHGSYTQDRASAVKPKR 491
Query: 140 WGGRAKCIGAIMCVGGALATSLYKGKEFYIGHHHHHHHH 178
W + G ++C G +L G HHH
Sbjct: 492 WDSQGGGNG-VLCYRGKCDHTLQGSNHIQPGSTSQQHHH 605
>TC12488 similar to UP|Q9LQZ3 (Q9LQZ3) F10A5.28, partial (47%)
Length = 887
Score = 108 bits (271), Expect = 1e-24
Identities = 68/243 (27%), Positives = 110/243 (44%), Gaps = 9/243 (3%)
Frame = +1
Query: 22 SMLLVQIFATGMQLLSRVILVQGTYIFALIAYRHIVAAICVAPFALYFERGQAKKFNWRV 81
+ML +Q G ++SR L G YR+I+A + + PFA + E+ +
Sbjct: 154 AMLALQFGYAGFHVVSRAALNMGVSKLVFPVYRNIIALLLLLPFAYFLEKKERPAITLNF 333
Query: 82 WFWLFLNGFVGMTMALGLFYYGLRDTTATYSVNFLNLVPILTFLTSIICRMENLKIGTWG 141
F VG+T + GL +T+ T++ N VP +TFL + I R+E +++
Sbjct: 334 LVQFFFLALVGITANQAFYLLGLDNTSPTFASAIQNSVPAITFLMAAILRIEQVRLNRKD 513
Query: 142 GRAKCIGAIMCVGGALATSLYKGKEFYIGHHHHHHHHS--------HHSAEISAVA-AHK 192
G AK G + CV GA +LYKG Y H +S S S++ A+
Sbjct: 514 GIAKIAGTVFCVVGASVITLYKGPTIYNPSPAVPHVNSSSITAPVIEESWSFSSLGDANG 693
Query: 193 THMFRGTFFLVGACCSYTAWFILQVKLVKVFPLRYWGIMLSCVMAAIQSATIGACLNQSK 252
+ G +L+G C S++AW +LQ ++K +P R +C +Q I +
Sbjct: 694 KNWTLGCVYLIGHCLSWSAWLVLQAPVLKKYPARLSVTSYTCFFGLLQFLVIALVAERDA 873
Query: 253 EAW 255
+AW
Sbjct: 874 QAW 882
>TC19992 similar to UP|Q8LE45 (Q8LE45) Nodulin-like protein, partial (46%)
Length = 615
Score = 97.1 bits (240), Expect = 5e-21
Identities = 53/191 (27%), Positives = 98/191 (50%), Gaps = 1/191 (0%)
Frame = +2
Query: 20 LLSMLLVQIFATGMQLLSRVILVQGTYIFALIAYRHIVAAICVAPFALYFERGQAKKFNW 79
++ ++ +Q GM +L + L G + L+ YRH VA + +APFAL ++ K +
Sbjct: 50 VIGVVFIQSGYAGMDVLCKAALNNGMSNYVLVVYRHAVAFVVMAPFALILDKKIRPKMTF 229
Query: 80 RVWFWLFLNGFVGMTMALGLFYYGLRDTTATYSVNFLNLVPILTFLTSIICRMENLKIGT 139
++ + + + L+Y G++ TTAT++V+ N++P +TFL + I ++E +KI +
Sbjct: 230 SIFVKIVALSLLEPVIDQNLYYLGMKYTTATFAVSMYNILPAITFLMAYILKLEKIKIKS 409
Query: 140 WGGRAKCIGAIMCVGGALATSLYKGKEFYI-GHHHHHHHHSHHSAEISAVAAHKTHMFRG 198
+AK G + V GA+ +L KG E + G H H H+ ++ H +G
Sbjct: 410 IRSQAKVFGTLATVAGAMVMTLIKGPELELFGTHGGSSTHIQHNGGVNL-----QHAIKG 574
Query: 199 TFFLVGACCSY 209
+ + C S+
Sbjct: 575 SVMITIGCFSF 607
>TC13120 weakly similar to UP|Q8LRB6 (Q8LRB6) Nodulin-like protein, partial
(22%)
Length = 609
Score = 85.1 bits (209), Expect = 2e-17
Identities = 47/158 (29%), Positives = 85/158 (53%)
Frame = +3
Query: 7 IESMKEWFKSSQALLSMLLVQIFATGMQLLSRVILVQGTYIFALIAYRHIVAAICVAPFA 66
I+ M W ++++ L +L VQ + GM + + + +G + I YR+ +AAI ++PFA
Sbjct: 57 IKKMGAWLRNAKPYLLLLAVQFGSAGMFIFAMDAMKKGMSHYVFIVYRNAIAAITLSPFA 236
Query: 67 LYFERGQAKKFNWRVWFWLFLNGFVGMTMALGLFYYGLRDTTATYSVNFLNLVPILTFLT 126
ER K + RV+ + F + + G++ T+A++ +N P +TF+
Sbjct: 237 FVLERKIRPKMSVRVFAEIMALAFFEIILDQCFALLGMKLTSASFLSAVMNAAPSITFVM 416
Query: 127 SIICRMENLKIGTWGGRAKCIGAIMCVGGALATSLYKG 164
+++ +ME++KI +AK IG + GG L +LYKG
Sbjct: 417 AVVLKMEHMKIKEVACQAKMIGTAVTFGGTLLMALYKG 530
>BI419330
Length = 470
Score = 85.1 bits (209), Expect = 2e-17
Identities = 47/145 (32%), Positives = 77/145 (52%), Gaps = 1/145 (0%)
Frame = +1
Query: 202 LVGACCSYTAWFILQVKLVKVFPLRYWGIMLSCVMAAIQSATIGACL-NQSKEAWRLDWN 260
L+G ++A++ILQ ++ +P C + A+QS+ + + + AW L +
Sbjct: 4 LIGGA-GFSAFYILQAITLRKYPAEMSLATWICFVGALQSSALTIFMEHHDPAAWSLGLD 180
Query: 261 LQLITILYSGALATAATFCLLTWAIKIKGPTFPPMFNPLALVFVAISDTIILGEPLKVGT 320
+L YSG + +A F + IK KGP F FNPL ++ V I+L E L +G+
Sbjct: 181 SKLFACAYSGIVTSAVQFYVQGTVIKTKGPVFVTAFNPLRMIIVTALACILLSEKLYLGS 360
Query: 321 LLGMVLIIIGLYYFLWGKRNEMPRL 345
L+G V++++GLY +WGK E L
Sbjct: 361 LIGGVVVVMGLYLVVWGKAKEQKNL 435
>CB828366
Length = 568
Score = 82.0 bits (201), Expect = 2e-16
Identities = 43/139 (30%), Positives = 78/139 (55%)
Frame = +3
Query: 109 ATYSVNFLNLVPILTFLTSIICRMENLKIGTWGGRAKCIGAIMCVGGALATSLYKGKEFY 168
ATY++ LNL+P++T++ ++ R+E +GT G+AK +G + VGGA+ +LY+G+ +
Sbjct: 135 ATYTITMLNLIPVVTYIMTVSLRLEKPNLGTRAGKAKLLGTLTGVGGAMILTLYEGRRIF 314
Query: 169 IGHHHHHHHHSHHSAEISAVAAHKTHMFRGTFFLVGACCSYTAWFILQVKLVKVFPLRYW 228
+ H S +S A+ + ++ G +G ++ W+I+Q + + FP +Y
Sbjct: 315 -----NWPLHIDLSKYMSPPPANGSRLW-GLILALGTSLCFSLWYIVQANMSQKFPWQYS 476
Query: 229 GIMLSCVMAAIQSATIGAC 247
L+ VM+AIQS C
Sbjct: 477 VAALTSVMSAIQSIIYALC 533
>TC16612 similar to UP|Q9SUF0 (Q9SUF0) Nodulin-like protein, partial (39%)
Length = 589
Score = 79.0 bits (193), Expect = 1e-15
Identities = 44/144 (30%), Positives = 78/144 (53%)
Frame = +3
Query: 14 FKSSQALLSMLLVQIFATGMQLLSRVILVQGTYIFALIAYRHIVAAICVAPFALYFERGQ 73
F+ + L+M+ +Q GM +++ V G + L YRHI+A +APFAL ER
Sbjct: 147 FQKFKPYLAMVSLQFGYAGMYIITMVSFKHGMSHWVLSVYRHIIAFCFMAPFALVLERKI 326
Query: 74 AKKFNWRVWFWLFLNGFVGMTMALGLFYYGLRDTTATYSVNFLNLVPILTFLTSIICRME 133
K V+ L + GF+ + L+ G+++T+ T++ +N++P +TF+ ++I R+E
Sbjct: 327 RPKMTLPVFLRLVVLGFLEPVLDQNLYNMGMKNTSTTFASATINVLPAITFVLALIFRLE 506
Query: 134 NLKIGTWGGRAKCIGAIMCVGGAL 157
+ AK IG ++ V GA+
Sbjct: 507 TVNFKKIHSVAKVIGTVVTVSGAM 578
>TC16483 homologue to UP|O24091 (O24091) MtN21 protein, partial (24%)
Length = 739
Score = 76.3 bits (186), Expect = 8e-15
Identities = 32/87 (36%), Positives = 54/87 (61%)
Frame = +1
Query: 255 WRLDWNLQLITILYSGALATAATFCLLTWAIKIKGPTFPPMFNPLALVFVAISDTIILGE 314
W + W++ L+ Y+G + ++ ++ + I+ KGP F F+PL ++ VAI + IL E
Sbjct: 1 WTIGWDMNLLAAAYAGIVTSSISYYVQGLVIRKKGPVFATAFSPLMMIIVAIMGSFILAE 180
Query: 315 PLKVGTLLGMVLIIIGLYYFLWGKRNE 341
+ +G ++G +LI+IGLY LWGK E
Sbjct: 181 QIFLGGIIGSILIVIGLYSVLWGKHKE 261
>BF177642
Length = 482
Score = 75.1 bits (183), Expect = 2e-14
Identities = 36/119 (30%), Positives = 59/119 (49%)
Frame = +1
Query: 234 CVMAAIQSATIGACLNQSKEAWRLDWNLQLITILYSGALATAATFCLLTWAIKIKGPTFP 293
C M + SA +G + AW L + +L+ + YS + WA + KGP +
Sbjct: 43 CSMVVVLSAIVGLIAEGTSRAWILRPDKELVAVCYSAIFVVTMRSVVYAWAFRKKGPIYV 222
Query: 294 PMFNPLALVFVAISDTIILGEPLKVGTLLGMVLIIIGLYYFLWGKRNEMPRLPQTSVAA 352
MF+PL +V + + LG+ L +G+L+G V+I IG Y +W + E +S +A
Sbjct: 223 AMFSPLGMVIAVVLGVLFLGDILYLGSLIGAVIIAIGFYGVIWAQAQEENDFASSSSSA 399
>TC17447 weakly similar to UP|Q8L9I2 (Q8L9I2) Nodulin MtN21-like protein,
partial (24%)
Length = 590
Score = 65.1 bits (157), Expect = 2e-11
Identities = 29/100 (29%), Positives = 49/100 (49%)
Frame = +3
Query: 242 ATIGACLNQSKEAWRLDWNLQLITILYSGALATAATFCLLTWAIKIKGPTFPPMFNPLAL 301
A +G W++ N L +IL SG + + T + +KG + MF PL++
Sbjct: 3 AVVGVITETKASVWKIGLNTALASILCSGIFGSILNLAVHTHMLHLKGAVYVAMFKPLSI 182
Query: 302 VFVAISDTIILGEPLKVGTLLGMVLIIIGLYYFLWGKRNE 341
+ + LG+ L +G+++G +I IG Y +WGK E
Sbjct: 183 AIAVVLGVMFLGDTLHLGSVIGATVISIGFYTVMWGKATE 302
>AV422152
Length = 465
Score = 63.9 bits (154), Expect = 4e-11
Identities = 33/115 (28%), Positives = 64/115 (54%)
Frame = +2
Query: 21 LSMLLVQIFATGMQLLSRVILVQGTYIFALIAYRHIVAAICVAPFALYFERGQAKKFNWR 80
L+++ +Q +GM +++ V G + L YRH+VA I +APFA ER K
Sbjct: 116 LAIVSLQFGYSGMYVITMVSFKHGMSHWILSVYRHVVALIIIAPFAFVLERKIRPKMTLP 295
Query: 81 VWFWLFLNGFVGMTMALGLFYYGLRDTTATYSVNFLNLVPILTFLTSIICRMENL 135
++ + GF+ + L+ G++ T+ T++ +N++P +TF+ ++I R+E +
Sbjct: 296 IFLRIVALGFLEPVLDQNLYNMGMKMTSTTFASATVNVLPAITFIMALIFRLETV 460
>TC19268 similar to UP|Q9C9F2 (Q9C9F2) MtN21-like protein, partial (8%)
Length = 505
Score = 63.2 bits (152), Expect = 7e-11
Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 6/133 (4%)
Frame = +2
Query: 143 RAKCIGAIMCVGGALATSLYKGKEFYIGHHHHHHHHSHHSAEISAVAAHKTHMFRGTFFL 202
+AK +G I +GGA+ +L KGKE I H + H + A + L
Sbjct: 2 KAKIVGTITGIGGAMVLTLVKGKEIKIESFHVNLLHPXNGTHPHAGGTGEN--------L 157
Query: 203 VGACCS------YTAWFILQVKLVKVFPLRYWGIMLSCVMAAIQSATIGACLNQSKEAWR 256
+GA CS Y+ W I+Q K+ + + Y L A++ S + + WR
Sbjct: 158 LGALCSLASGTSYSLWLIIQRKMTERYDGHYTSTALMSFWASVLSFVFALFIERDWSQWR 337
Query: 257 LDWNLQLITILYS 269
L WN++L+T+ Y+
Sbjct: 338 LGWNIRLLTVAYA 376
>AV412250
Length = 403
Score = 63.2 bits (152), Expect = 7e-11
Identities = 33/118 (27%), Positives = 59/118 (49%)
Frame = +3
Query: 18 QALLSMLLVQIFATGMQLLSRVILVQGTYIFALIAYRHIVAAICVAPFALYFERGQAKKF 77
+A L M +VQ G +L ++++ G + + YR I++A A FER
Sbjct: 12 KAFLLMFVVQAAFAGNNILYKIVIFDGMPVSIITVYRQIISAAFTLSLAFIFERNNMPNL 191
Query: 78 NWRVWFWLFLNGFVGMTMALGLFYYGLRDTTATYSVNFLNLVPILTFLTSIICRMENL 135
+++ FLNG +G ++ L++ L +AT+ NL+P +TF +I+ +E L
Sbjct: 192 TFKLLSISFLNGLLGGSLYQNLYFESLSLISATFVTALFNLIPAITFALAILFGLETL 365
>BP073083
Length = 352
Score = 61.6 bits (148), Expect = 2e-10
Identities = 26/73 (35%), Positives = 45/73 (61%)
Frame = -2
Query: 270 GALATAATFCLLTWAIKIKGPTFPPMFNPLALVFVAISDTIILGEPLKVGTLLGMVLIII 329
G +A+ + L+ W +++KGP F+PL LV VA+ ++ L +G+++G +LI++
Sbjct: 348 GGVASGVVWVLMAWCLRLKGPL*ASAFHPLLLVLVALPGSLFFEGKLYLGSIIGSILIVL 169
Query: 330 GLYYFLWGKRNEM 342
GLY LWG E+
Sbjct: 168 GLYLVLWG*GKEL 130
>AW164173
Length = 377
Score = 41.6 bits (96), Expect(2) = 4e-10
Identities = 17/44 (38%), Positives = 30/44 (67%)
Frame = +1
Query: 256 RLDWNLQLITILYSGALATAATFCLLTWAIKIKGPTFPPMFNPL 299
R++ ++ LI+ILYSG +T + + TW +++KGP + +F PL
Sbjct: 13 RINPDVTLISILYSGFFSTGLSCLVHTWGLRLKGPVYISLFKPL 144
Score = 38.9 bits (89), Expect(2) = 4e-10
Identities = 17/46 (36%), Positives = 24/46 (51%)
Frame = +3
Query: 296 FNPLALVFVAISDTIILGEPLKVGTLLGMVLIIIGLYYFLWGKRNE 341
F +V I LG+ L GT++G V++ IG Y +WGK E
Sbjct: 132 FQASTIVIATSMSVIFLGDALHFGTVVGAVILSIGFYAVIWGKAKE 269
>BI419045
Length = 370
Score = 59.3 bits (142), Expect = 1e-09
Identities = 34/118 (28%), Positives = 59/118 (49%), Gaps = 11/118 (9%)
Frame = +3
Query: 15 KSSQALLSMLLVQI-----------FATGMQLLSRVILVQGTYIFALIAYRHIVAAICVA 63
K + ALLSML+ GM +L + L G + L+ YRH+VA + +A
Sbjct: 9 KQTPALLSMLITGTPHLVM*NS*APLCIGMDVLCKAALNNGMSNYVLVVYRHVVAFVVMA 188
Query: 64 PFALYFERGQAKKFNWRVWFWLFLNGFVGMTMALGLFYYGLRDTTATYSVNFLNLVPI 121
PFAL ++ K + ++ + + +A L++ G++ TTAT++V+ L + I
Sbjct: 189 PFALILDKNIRPKMTFSIFVKIVALSLLEPVIAQNLYFLGMKYTTATFAVSMLEKIKI 362
>TC16237 weakly similar to UP|Q84TV1 (Q84TV1) Nodulin-like protein, partial
(11%)
Length = 695
Score = 53.5 bits (127), Expect = 6e-08
Identities = 24/71 (33%), Positives = 45/71 (62%)
Frame = +3
Query: 259 WNLQLITILYSGALATAATFCLLTWAIKIKGPTFPPMFNPLALVFVAISDTIILGEPLKV 318
WN++ ++ + + T+ L W +++KGP + FNPL LV VAI+ ++ L E L +
Sbjct: 12 WNIKF-SLQFMWVCSFWNTWVLTAWVLRLKGPLYASSFNPLFLVIVAIAGSLFLDEKLYL 188
Query: 319 GTLLGMVLIII 329
G+++G +LI++
Sbjct: 189 GSVIGALLIVL 221
>AW163925
Length = 391
Score = 53.1 bits (126), Expect = 8e-08
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Frame = +2
Query: 101 YYGLRDTTATYSVNFLNLVPILTFLTSIICRMENLKIGTWGGRAKCIGAIMCVGGALATS 160
+ G++ T+A+++ +N VP +TF+ ++I R+E + + G A+ IG ++ GGAL +
Sbjct: 59 FLGMQYTSASFASAMMNAVPSVTFVLALILRLERVNLKQIQGIAQVIGTLVTFGGALVMT 238
Query: 161 LYKGK--EFYIGHHHHHHHHSHHSAE 184
LYKG HH + HS +
Sbjct: 239 LYKGPLINLLSSSKTSHHQNGTHSPQ 316
>BI420050
Length = 613
Score = 52.8 bits (125), Expect = 1e-07
Identities = 31/83 (37%), Positives = 46/83 (55%)
Frame = +3
Query: 87 LNGFVGMTMALGLFYYGLRDTTATYSVNFLNLVPILTFLTSIICRMENLKIGTWGGRAKC 146
L G +G T + + Y G+ ++ T S NLVP TFL ++I RME + I + +AK
Sbjct: 231 LLGLIGCTSQI-VGYTGISYSSPTLSSAISNLVPAFTFLFAVIFRMEKVAIKSSSTQAKV 407
Query: 147 IGAIMCVGGALATSLYKGKEFYI 169
+G I+ + GA +LYKG I
Sbjct: 408 LGTIVSITGAFIVTLYKGPPIII 476
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.327 0.139 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,455,651
Number of Sequences: 28460
Number of extensions: 152370
Number of successful extensions: 6768
Number of sequences better than 10.0: 324
Number of HSP's better than 10.0 without gapping: 2541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4443
length of query: 392
length of database: 4,897,600
effective HSP length: 92
effective length of query: 300
effective length of database: 2,279,280
effective search space: 683784000
effective search space used: 683784000
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (26.2 bits)
Medicago: description of AC133139.8