BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC131248.10 - phase: 0
(1039 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC9911 similar to UP|AAO25581 (AAO25581) Cellulose synthase, par... 560 e-160
TC12868 homologue to UP|AAO25536 (AAO25536) Cellulose synthase, ... 558 e-159
TC18176 homologue to UP|AAP97495 (AAP97495) Cellulose synthase, ... 329 1e-90
TC20121 similar to UP|Q9SWW6 (Q9SWW6) Cellulose synthase catalyt... 318 4e-87
AV779485 295 2e-80
TC15180 homologue to UP|Q9XGX6 (Q9XGX6) Cellulose synthase catal... 280 1e-75
AV779090 248 3e-66
AV423538 242 2e-64
BP038345 227 6e-60
AV773960 218 3e-57
AV410357 211 6e-55
AV416600 210 1e-54
TC15250 homologue to UP|Q9SWW6 (Q9SWW6) Cellulose synthase catal... 163 1e-40
TC18701 similar to UP|Q8GSW2 (Q8GSW2) Cellulose synthase, partia... 160 1e-39
AV778804 150 1e-36
BF177827 147 1e-35
BP033786 146 1e-35
TC9552 homologue to UP|Q8H2C6 (Q8H2C6) Cellulose synthase, parti... 145 4e-35
TC11026 similar to UP|AAO25536 (AAO25536) Cellulose synthase, pa... 133 9e-35
TC14362 similar to UP|AAO25581 (AAO25581) Cellulose synthase, pa... 142 3e-34
>TC9911 similar to UP|AAO25581 (AAO25581) Cellulose synthase, partial (31%)
Length = 1092
Score = 560 bits (1443), Expect = e-160
Identities = 261/375 (69%), Positives = 307/375 (81%), Gaps = 3/375 (0%)
Frame = +2
Query: 468 REKRPGYPHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKALREAMCFLMDPQLG 527
REKRPG+ H KKAGAMNA +R SA+++NAP++LN+DCDHYINNSKALREAMCF+MDPQLG
Sbjct: 11 REKRPGFDHTKKAGAMNAWMRASAIISNAPYLLNVDCDHYINNSKALREAMCFMMDPQLG 190
Query: 528 KKLCYVQFPQRFDGIDRHDRYANRNTVFFDINMKGLDGIQGPVYVGTGTVFNRQALYGYD 587
KK+CYVQFPQRFDGIDRHDRY+NRN VFFDINMKGLDGIQGP+YVGTG V+ R ALYGYD
Sbjct: 191 KKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVYRRYALYGYD 370
Query: 588 PPVSEKRPKMTCDCWPKWCCFC---CGSRKTKSKKKSGTNGRSLFSRLYKKKKMGGKDYV 644
P +K P TC+CWPKWCC C C SRK KK+ N + +KKK+ +
Sbjct: 371 APAKKKAPSKTCNCWPKWCCLCFPCCASRK----KKNANNTKD------RKKKVKHSE-- 514
Query: 645 RKGSGSMFDLEEIEEGLEGYEELEKSSLMSQKSFEKRFGQSPVFIASTLMENGGLPEGTN 704
S + LE +E G EG EK+S ++Q EKRFGQSPVF+ASTL+E+GG+P+G +
Sbjct: 515 --ASKQIHALENMEAGNEGSNN-EKTSNLTQMKLEKRFGQSPVFVASTLLEHGGVPKGVS 685
Query: 705 TQSLVKEAIHNISCGYEEKTDWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPKRPAF 764
SL+KEAI ISCGYE+KT+WGKE+GWIYGSVTEDILTGFKMHC GW+SVYC+PK PAF
Sbjct: 686 PASLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKLPAF 865
Query: 765 KGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGKLKYLERLAYTNTIVYPFTSI 824
KGSAPINLSDRLHQVLRWALGSVEIF SRHCP+WYGYGG LK+LER +Y N++VYP+TS+
Sbjct: 866 KGSAPINLSDRLHQVLRWALGSVEIFFSRHCPIWYGYGGGLKWLERFSYINSVVYPWTSL 1045
Query: 825 PLLAYCTIPAVCLLT 839
PLL YCT+PA+CLLT
Sbjct: 1046PLLVYCTLPAICLLT 1090
>TC12868 homologue to UP|AAO25536 (AAO25536) Cellulose synthase, partial
(34%)
Length = 1102
Score = 558 bits (1437), Expect = e-159
Identities = 266/360 (73%), Positives = 306/360 (84%), Gaps = 9/360 (2%)
Frame = +3
Query: 634 KKKKMGGKDYVRKGSG--------SMFDLEEIEEGLEGYEELEKSSLMSQKSFEKRFGQS 685
KK + G K Y+ K +F++E+IEEG+EGY++ E+S LMSQKS EKRFGQS
Sbjct: 24 KKGRGGNKKYIDKKRAVKRTESTIPIFNMEDIEEGVEGYDD-ERSLLMSQKSLEKRFGQS 200
Query: 686 PVFIASTLMENGGLPEGTNTQSLVKEAIHNISCGYEEKTDWGKEIGWIYGSVTEDILTGF 745
PVFIA+T ME GG+P TN +L+KEAIH ISCGYE+KT+WGKEIGWIYGSVTEDILTGF
Sbjct: 201 PVFIAATFMEQGGIPPSTNPATLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGF 380
Query: 746 KMHCRGWKSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGKL 805
KMH RGW S+YCMP RPAFKGSAPINLSDRL+QVLRWALGS+EIF+SRHCPLWYGY GKL
Sbjct: 381 KMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEIFMSRHCPLWYGYNGKL 560
Query: 806 KYLERLAYTNTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTLTNLASVWFMALFISIILT 865
K L+RLAY NT+VYPFTSIPLLAYCT+PA CL+T KFIIP ++N AS+WF+ LF+SI T
Sbjct: 561 KGLQRLAYINTVVYPFTSIPLLAYCTLPAFCLITNKFIIPEISNFASMWFILLFVSIFTT 740
Query: 866 GVLELRWSGVAIEDWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGVDTNFTVTAKAAD-DA 924
+LELRWSGV IEDWWRNEQFWVIGG SAHLFAVFQGLLKVLAG+DTNFTVT+KA D D
Sbjct: 741 AILELRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKANDEDG 920
Query: 925 EFGELYLFKWTTLLIPPTTLIILNIVGVVAGVSDAINSGSGSWGPLFGKLFFAFWVIVHL 984
+F ELY+FKWT+LLIPPTT++I+N+VG+V GVS AINSG S GPLFGKLFFA WVI HL
Sbjct: 921 DFQELYIFKWTSLLIPPTTVLIVNLVGIVXGVSFAINSGYQSXGPLFGKLFFAIWVIAHL 1100
>TC18176 homologue to UP|AAP97495 (AAP97495) Cellulose synthase, partial
(22%)
Length = 743
Score = 329 bits (844), Expect = 1e-90
Identities = 172/265 (64%), Positives = 197/265 (73%), Gaps = 3/265 (1%)
Frame = +3
Query: 487 VRVSAVLTNAPFMLNLDCDHYINNSKALREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHD 546
+R AVLTN PF+LNLDCDHYINNSKALREAMCF+MDP LGK +CYVQFPQRFDGIDR+D
Sbjct: 3 IRHEAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKNVCYVQFPQRFDGIDRND 182
Query: 547 RYANRNTVFFDINMKGLDGIQGPVYVGTGTVFNRQALYGYDPPVSEKRPKMTCDCWPKWC 606
RYANRNTVFFDIN++GLDGIQGPVYVGTG VFNR ALYGY+PP+ K K P
Sbjct: 183 RYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHKK------PGLL 344
Query: 607 CFCCGSRKTKSKK--KSGTNGRSLFSRLYKKKKMGGKDYVRKGSGSMFDLEEIEEGLEGY 664
G + KS K K G++ KKK D + +F LE+IEEG+EG
Sbjct: 345 SSLFGGDRKKSSKSNKKGSD---------KKKSSKHVD----PTVPIFSLEDIEEGVEGT 485
Query: 665 E-ELEKSSLMSQKSFEKRFGQSPVFIASTLMENGGLPEGTNTQSLVKEAIHNISCGYEEK 723
+ EKS LMSQ S EKRFGQS VF+ASTLMENGG+P+ + L+KEAIH ISCGYE+K
Sbjct: 486 GFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATPEILLKEAIHVISCGYEDK 665
Query: 724 TDWGKEIGWIYGSVTEDILTGFKMH 748
++WG EIGWIYGSVTEDILTGFKMH
Sbjct: 666 SEWGTEIGWIYGSVTEDILTGFKMH 740
>TC20121 similar to UP|Q9SWW6 (Q9SWW6) Cellulose synthase catalytic subunit
(AT5g17420/T10B6_80), partial (21%)
Length = 645
Score = 318 bits (814), Expect = 4e-87
Identities = 158/251 (62%), Positives = 180/251 (70%), Gaps = 1/251 (0%)
Frame = +3
Query: 500 LNLDCDHYINNSKALREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNTVFFDIN 559
LNLDCDHYINNSKA+REAMCFLMDPQ GKK+CYVQFPQRFDGID HDRYANRNTVFFDIN
Sbjct: 3 LNLDCDHYINNSKAVREAMCFLMDPQTGKKVCYVQFPQRFDGIDTHDRYANRNTVFFDIN 182
Query: 560 MKGLDGIQGPVYVGTGTVFNRQALYGYDPPVSEKRPKM-TCDCWPKWCCFCCGSRKTKSK 618
MKGLDGIQGPVYVGTG VF RQALYGY+PP KRPKM +CD CC C GSRK
Sbjct: 183 MKGLDGIQGPVYVGTGCVFRRQALYGYNPPKGPKRPKMVSCD-----CCPCFGSRKKLKH 347
Query: 619 KKSGTNGRSLFSRLYKKKKMGGKDYVRKGSGSMFDLEEIEEGLEGYEELEKSSLMSQKSF 678
KS NG + L+G ++ +K LMSQ +F
Sbjct: 348 AKSDVNGEA-------------------------------ASLKGMDD-DKEVLMSQMNF 431
Query: 679 EKRFGQSPVFIASTLMENGGLPEGTNTQSLVKEAIHNISCGYEEKTDWGKEIGWIYGSVT 738
EK+FGQS +F+ STLME GG+P ++ ++KEAIH ISCGYE+KT+WG E+GWIYGS+T
Sbjct: 432 EKKFGQSSIFVTSTLMEEGGVPPSSSPAGMLKEAIHVISCGYEDKTEWGLEVGWIYGSIT 611
Query: 739 EDILTGFKMHC 749
EDILTGFKMHC
Sbjct: 612 EDILTGFKMHC 644
>AV779485
Length = 551
Score = 295 bits (755), Expect = 2e-80
Identities = 137/176 (77%), Positives = 155/176 (87%)
Frame = -1
Query: 318 LSILSVDYPVEKVTCYVSDDGASMLLFDCLAETSEFARRWVPFCKKYSIEPRAPEYYFNE 377
LSIL+VDYPV+KV CYVSDDGA+ML F+ L+ETSEFARRWVPFCKKY+IEPRAPE+YF
Sbjct: 551 LSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARRWVPFCKKYNIEPRAPEWYFGL 372
Query: 378 KIDYLKDKVEPTFVKERRSMKREYEEFKVKINALVAKALKKPEEGWVMQDGTPWPGNNTR 437
KIDYL++KV P FV+ERR+MKR+YEEFKVKIN+LVA A K PE+GW MQDGTPWPGNN R
Sbjct: 371 KIDYLRNKVHPAFVRERRAMKRDYEEFKVKINSLVATATKVPEDGWTMQDGTPWPGNNVR 192
Query: 438 DHPGMIQVYLGSAGALDVEGKELPKLVYISREKRPGYPHHKKAGAMNALVRVSAVL 493
DHPGMIQV+LG G DVEG ELP+LVY SREKRPG+ HHKKAGAMNAL+R SA L
Sbjct: 191 DHPGMIQVFLGHDGVRDVEGNELPRLVYCSREKRPGFDHHKKAGAMNALMRASAYL 24
>TC15180 homologue to UP|Q9XGX6 (Q9XGX6) Cellulose synthase catalytic subunit,
partial (15%)
Length = 814
Score = 280 bits (715), Expect = 1e-75
Identities = 130/160 (81%), Positives = 149/160 (92%), Gaps = 1/160 (0%)
Frame = +3
Query: 881 WRNEQFWVIGGVSAHLFAVFQGLLKVLAGVDTNFTVTAKAAD-DAEFGELYLFKWTTLLI 939
WRNEQFWVIGGVSAHLFAVFQGLLKVLAG+DTNFTVT+K++D D +F ELY+FKWTTLLI
Sbjct: 3 WRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKSSDEDGDFEELYMFKWTTLLI 182
Query: 940 PPTTLIILNIVGVVAGVSDAINSGSGSWGPLFGKLFFAFWVIVHLYPFLKGLMGKQNRTP 999
PPTTL+I+N+VGVVAG+S A+NSG SWGPLFGKLFFAFWVIVHLYPFL+GLMG+QNRTP
Sbjct: 183 PPTTLLIINMVGVVAGISYAVNSGYQSWGPLFGKLFFAFWVIVHLYPFLRGLMGRQNRTP 362
Query: 1000 TIVVLWSILLASIFSLIWVRIDPFLPKQTGPILKQCGVEC 1039
TIVV+WSILLASIFSL+WVRIDPF K TGP +++CG+ C
Sbjct: 363 TIVVVWSILLASIFSLLWVRIDPFTTKVTGPKVEECGINC 482
>AV779090
Length = 479
Score = 248 bits (633), Expect = 3e-66
Identities = 116/159 (72%), Positives = 138/159 (85%)
Frame = +2
Query: 874 GVAIEDWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGVDTNFTVTAKAADDAEFGELYLFK 933
GV I+D WRNEQ WVIGGVS++LFA+F GLLKVLAGVDTNFTVT+KAADD F ELY+FK
Sbjct: 5 GVGIDDGWRNEQLWVIGGVSSYLFALFHGLLKVLAGVDTNFTVTSKAADDGAFSELYIFK 184
Query: 934 WTTLLIPPTTLIILNIVGVVAGVSDAINSGSGSWGPLFGKLFFAFWVIVHLYPFLKGLMG 993
WT+LLI PTTL+I+N+VGVV G+SDAIN+G SWGPL G+LFF WVI+HLYPFLKGL+G
Sbjct: 185 WTSLLIAPTTLLIINMVGVVVGISDAINNGYDSWGPLLGRLFFGLWVIIHLYPFLKGLLG 364
Query: 994 KQNRTPTIVVLWSILLASIFSLIWVRIDPFLPKQTGPIL 1032
KQ+R PTIV +WSILLASI +L+WVRI PF+ + GP+L
Sbjct: 365 KQDRMPTIVWVWSILLASILTLMWVRIKPFVSRD-GPVL 478
>AV423538
Length = 414
Score = 242 bits (618), Expect = 2e-64
Identities = 124/139 (89%), Positives = 130/139 (93%), Gaps = 2/139 (1%)
Frame = +3
Query: 607 CFCCG-SRKTKSKKKSGTNGRSLFSRLY-KKKKMGGKDYVRKGSGSMFDLEEIEEGLEGY 664
CFCCG SRK+KSKKKSG G LFS LY KKKKM GKDYVRKGSG+MFDLEEIEEGLEGY
Sbjct: 3 CFCCGGSRKSKSKKKSGRKG--LFSGLYTKKKKMMGKDYVRKGSGTMFDLEEIEEGLEGY 176
Query: 665 EELEKSSLMSQKSFEKRFGQSPVFIASTLMENGGLPEGTNTQSLVKEAIHNISCGYEEKT 724
EELEKS+LMSQK+FEKRFGQSPVFIASTL+ENGGLPEGTNTQSLVKEAIH ISCGYEEKT
Sbjct: 177 EELEKSTLMSQKNFEKRFGQSPVFIASTLVENGGLPEGTNTQSLVKEAIHVISCGYEEKT 356
Query: 725 DWGKEIGWIYGSVTEDILT 743
+WGKEIGWIYGSVTEDILT
Sbjct: 357 EWGKEIGWIYGSVTEDILT 413
>BP038345
Length = 528
Score = 227 bits (579), Expect = 6e-60
Identities = 124/195 (63%), Positives = 139/195 (70%), Gaps = 3/195 (1%)
Frame = -1
Query: 484 NALVRVSAVLTNAPFMLNLDCDHYINNSKALREAMCFLMDPQLGKKLCYVQFPQRFDGID 543
N+LVRVSAVLTN PF+LNLDCDHYINNSKALREAMCF+MDP LGK +CYVQFPQRFDGID
Sbjct: 528 NSLVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKNVCYVQFPQRFDGID 349
Query: 544 RHDRYANRNTVFFDINMKGLDGIQGPVYVGTGTVFNRQALYGYDPPVSEKRPKMTCDCWP 603
++DRYANRNTVFFDIN++GLDGIQGPVYVGTG VFNR ALYGYDPPV K K
Sbjct: 348 KNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYDPPVKPKHKKNGL---- 181
Query: 604 KWCCFCCGSRK--TKSKKKSGTNGRSLFSRLYKKKKMGGKDYVRKGSGSMFDLEEIEEGL 661
C G RK +KS+KK N KK V +F L++IEEG+
Sbjct: 180 -LSSLCGGDRKKSSKSQKKGSKN---------KKSSKHADPTV-----PVFSLDDIEEGV 46
Query: 662 EGYE-ELEKSSLMSQ 675
EG E + EKS LMSQ
Sbjct: 45 EGAEFDDEKSLLMSQ 1
>AV773960
Length = 503
Score = 218 bits (556), Expect = 3e-57
Identities = 100/127 (78%), Positives = 114/127 (89%), Gaps = 1/127 (0%)
Frame = +2
Query: 729 EIGWIYGSVTEDILTGFKMHCRGWKSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVE 788
++GWIYGSVTEDILTGFKMHCRGW+S+YCMP RPAFKGSAPINLSDR HQVLRWALGSVE
Sbjct: 80 QMGWIYGSVTEDILTGFKMHCRGWRSIYCMPLRPAFKGSAPINLSDR*HQVLRWALGSVE 259
Query: 789 IFLSRHCPLWYGY-GGKLKYLERLAYTNTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTL 847
IF SRHCPLWYG GG+L +L+RLAY NTIVYPFTS+PL+AY + PA+CLLTGKFIIPT+
Sbjct: 260 IFFSRHCPLWYGLAGGRLSWLQRLAYINTIVYPFTSLPLVAYGSWPAICLLTGKFIIPTV 439
Query: 848 TNLASVW 854
+ + W
Sbjct: 440 ISSS*SW 460
>AV410357
Length = 375
Score = 211 bits (536), Expect = 6e-55
Identities = 97/124 (78%), Positives = 117/124 (94%)
Frame = +3
Query: 276 YLDRLSIRFEREGEPNQLSPVDVFVSSVDPLKEPPIITANTVLSILSVDYPVEKVTCYVS 335
YLDRL++R++REGEP+QL+ VD+FVS+VDPLKEPP++TANTVLSIL+VDYPV+KV+CYVS
Sbjct: 3 YLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVS 182
Query: 336 DDGASMLLFDCLAETSEFARRWVPFCKKYSIEPRAPEYYFNEKIDYLKDKVEPTFVKERR 395
DDGA+ML F+ LAETSEFAR+WVPF KKYSIEPRAPE+YF KIDYLKDKV P+FVK+RR
Sbjct: 183 DDGAAMLTFEALAETSEFARKWVPFAKKYSIEPRAPEWYFALKIDYLKDKVHPSFVKDRR 362
Query: 396 SMKR 399
+MKR
Sbjct: 363 AMKR 374
>AV416600
Length = 378
Score = 210 bits (534), Expect = 1e-54
Identities = 100/124 (80%), Positives = 113/124 (90%)
Frame = +2
Query: 845 PTLTNLASVWFMALFISIILTGVLELRWSGVAIEDWWRNEQFWVIGGVSAHLFAVFQGLL 904
P L+NLASV F+ LF+SII+T VLELRWSGV+IED WRNEQFWVIGGVSAHLFAVFQGLL
Sbjct: 5 PVLSNLASVLFLGLFLSIIMTSVLELRWSGVSIEDLWRNEQFWVIGGVSAHLFAVFQGLL 184
Query: 905 KVLAGVDTNFTVTAKAADDAEFGELYLFKWTTLLIPPTTLIILNIVGVVAGVSDAINSGS 964
K+LAGVDTNFTVTAKAA+D EFG+LY+ KWTTLLIPPTTLI++N+VGVVAG SDA+N G
Sbjct: 185 KMLAGVDTNFTVTAKAAEDGEFGDLYIVKWTTLLIPPTTLIVVNMVGVVAGFSDALNGGY 364
Query: 965 GSWG 968
SWG
Sbjct: 365 ESWG 376
>TC15250 homologue to UP|Q9SWW6 (Q9SWW6) Cellulose synthase catalytic subunit
(AT5g17420/T10B6_80), partial (9%)
Length = 602
Score = 163 bits (413), Expect = 1e-40
Identities = 75/94 (79%), Positives = 85/94 (89%)
Frame = +3
Query: 946 ILNIVGVVAGVSDAINSGSGSWGPLFGKLFFAFWVIVHLYPFLKGLMGKQNRTPTIVVLW 1005
I+NIVGVVAGVSDAI++G SWGPLFGKLFF+FWVIVHLYPFLKGLMG+QNRTPTIVV+W
Sbjct: 3 IINIVGVVAGVSDAIHNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIW 182
Query: 1006 SILLASIFSLIWVRIDPFLPKQTGPILKQCGVEC 1039
S+LLASIFSL+WVRIDPF+ K GP K CG+ C
Sbjct: 183 SVLLASIFSLLWVRIDPFVLKTKGPDTKLCGINC 284
>TC18701 similar to UP|Q8GSW2 (Q8GSW2) Cellulose synthase, partial (28%)
Length = 969
Score = 160 bits (405), Expect = 1e-39
Identities = 90/181 (49%), Positives = 118/181 (64%), Gaps = 2/181 (1%)
Frame = +3
Query: 106 EFPVKNHHDDLDQNRDVNHVESVDYNQQKLHTF--SSAGSVTGKDLEGEKEFYSNEEWQE 163
EFPV +H+ + + ++ +++H + S +GSV + +KE E W++
Sbjct: 495 EFPVGSHYGEQMLSSSLH---------KRIHPYPMSESGSVAWDE---KKE----EGWKD 626
Query: 164 RVEKWKVRQEKRGLLNKEDGKEDQGEEDEYLMAEARQPLWRKVPIPSSLINPYRIVIIMR 223
R++ WK++Q G ED D ++ EARQPL RKVPI SS INPYR+VI+ R
Sbjct: 627 RMDDWKLQQGNLGPEADED-------TDASMLDEARQPLSRKVPIASSKINPYRMVIVAR 785
Query: 224 LVILAFFFRFRILTPAYDAYPLWLISVICEIWFALSWILDQFPKWLPITRETYLDRLSIR 283
LVILAFF R+RIL P +DA LWL S+ICEIWFAL+WILDQFPKW PI RET LDRLSIR
Sbjct: 786 LVILAFFLRYRILNPVHDALGLWLTSIICEIWFALTWILDQFPKWFPIDRET*LDRLSIR 965
Query: 284 F 284
+
Sbjct: 966 Y 968
Score = 131 bits (330), Expect = 5e-31
Identities = 70/146 (47%), Positives = 90/146 (60%), Gaps = 4/146 (2%)
Frame = +2
Query: 2 AGLITGSNSHFS----HDSDEHKPPPANKSSSKICRVCGDEIGYKENGELFVACHVCAFP 57
AGL+ GS++ H +EHKP ++C +CGD +G +G+LFVAC+ C FP
Sbjct: 26 AGLVAGSHNRNELVVIHGHEEHKP--LKNLDGQVCEICGDGVGLTVDGDLFVACNECGFP 199
Query: 58 VCKPCYEYERSEGNQCCPQCNSRYKRHKGCPRVVGDEDENLDGDDFEDEFPVKNHHDDLD 117
VC+PCYEYER EG+Q CPQC +RYKR KG PRV GD+DE D DD E EF + D
Sbjct: 200 VCRPCYEYERREGSQNCPQCKTRYKRLKGSPRVEGDDDEE-DVDDIEHEFNI-----DDQ 361
Query: 118 QNRDVNHVESVDYNQQKLHTFSSAGS 143
+N+ VN VE++ LH S GS
Sbjct: 362 KNKQVNVVEAL------LHGKMSYGS 421
>AV778804
Length = 573
Score = 150 bits (378), Expect = 1e-36
Identities = 76/153 (49%), Positives = 99/153 (64%), Gaps = 9/153 (5%)
Frame = +1
Query: 158 NEEWQERVEKWKVRQEKRGLLNKEDGK---------EDQGEEDEYLMAEARQPLWRKVPI 208
N W+ RVE WK + +K+ KE K E Q EE + A A +PL +PI
Sbjct: 118 NPIWKNRVESWKEKDKKKKK-KKEAPKAENEMPIPPEQQMEEMQSTEAAAAEPLSVIIPI 294
Query: 209 PSSLINPYRIVIIMRLVILAFFFRFRILTPAYDAYPLWLISVICEIWFALSWILDQFPKW 268
+ ++PYR VIIMRL+IL FF +R+ P A+ LWL S+ICEIWFA +W+LDQFPKW
Sbjct: 295 SKTKLSPYRFVIIMRLIILGLFFHYRVTHPVDSAFGLWLTSIICEIWFAFAWVLDQFPKW 474
Query: 269 LPITRETYLDRLSIRFEREGEPNQLSPVDVFVS 301
PI RET++DRLS R+E+ EP+QL+ VD FVS
Sbjct: 475 SPINRETFIDRLSARYEQNVEPSQLAAVDFFVS 573
>BF177827
Length = 494
Score = 147 bits (370), Expect = 1e-35
Identities = 75/142 (52%), Positives = 93/142 (64%), Gaps = 20/142 (14%)
Frame = +2
Query: 673 MSQKSFEKRFGQSPVFIASTLMEN-------------GGLPEGTNT-------QSLVKEA 712
M+ +F K+FG S I S + G P G T + V EA
Sbjct: 41 MNLSTFPKKFGNSTFLIESIPVAEFQGRPLADHPAVKNGRPPGALTIPRELLDAATVAEA 220
Query: 713 IHNISCGYEEKTDWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPKRPAFKGSAPINL 772
I ISC YE+KT+WG+ +GWIYGSVTED++TG++MH RGWKSVYC+ KR AF+G+APINL
Sbjct: 221 ISVISCWYEDKTEWGQRVGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINL 400
Query: 773 SDRLHQVLRWALGSVEIFLSRH 794
+DRLHQVLRWA GSVEIF SR+
Sbjct: 401 TDRLHQVLRWATGSVEIFFSRN 466
>BP033786
Length = 487
Score = 146 bits (369), Expect = 1e-35
Identities = 69/149 (46%), Positives = 101/149 (67%), Gaps = 4/149 (2%)
Frame = -1
Query: 893 SAHLFAVFQGLLKVLAGVDTNFTVTAKAA---DDAEFGELYLFKWTTLLIPPTTLIILNI 949
SAHL AV QGLLKV+AG++ +FT+T+K+ D+ F +LY+ KW++L+IPP + ++N+
Sbjct: 484 SAHLAAVVQGLLKVMAGIEISFTLTSKSGGEEDEDMFADLYIVKWSSLMIPPIVIAMMNV 305
Query: 950 VGVVAGVSDAINSGSGSWGPLFGKLFFAFWVIVHLYPFLKGLMGKQNRTPTIVVLWSILL 1009
+G+ S I S + W G FF+FWV+ HLYPF KGLMGK+ +TPTIV +WS L+
Sbjct: 304 IGIAVAFSRTIYSANPQWSKFIGGAFFSFWVLAHLYPFAKGLMGKRGKTPTIVFVWSGLI 125
Query: 1010 ASIFSLIWVRIDPFLPK-QTGPILKQCGV 1037
A SL+W+ I P PK G +L++ +
Sbjct: 124 AITLSLLWIAISP--PKGAEGQVLEEISI 44
>TC9552 homologue to UP|Q8H2C6 (Q8H2C6) Cellulose synthase, partial (9%)
Length = 592
Score = 145 bits (365), Expect = 4e-35
Identities = 74/124 (59%), Positives = 88/124 (70%), Gaps = 6/124 (4%)
Frame = +1
Query: 922 DDAEFGELYLFKWTTLLIPPTTLIILNIVGVVAGVSDAINSGSGSWG----PLFGKLFFA 977
+D + ELYLFKWTTLLIPPTTL+I+N+VG VAG W L FA
Sbjct: 10 EDXDSAELYLFKWTTLLIPPTTLLIINLVGFVAGNFVCHTLTRWLWVLGSCSLVRTFSFA 189
Query: 978 FWVIVH--LYPFLKGLMGKQNRTPTIVVLWSILLASIFSLIWVRIDPFLPKQTGPILKQC 1035
FWV LYPFLKGLMG+QNRTPTIVV+WSILLASIFSL+WVR+DPF + TGP +++C
Sbjct: 190 FWVRFFRLLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRVDPFTTRVTGPKVEEC 369
Query: 1036 GVEC 1039
G+ C
Sbjct: 370 GINC 381
>TC11026 similar to UP|AAO25536 (AAO25536) Cellulose synthase, partial (25%)
Length = 946
Score = 133 bits (334), Expect(2) = 9e-35
Identities = 81/239 (33%), Positives = 113/239 (46%), Gaps = 51/239 (21%)
Frame = +1
Query: 2 AGLITGSNSH-----FSHDSDEHKPPPANKSSSKICRVCGDEIGYKENGELFVACHVCAF 56
AG++ GS+ HDS + P P + +IC++CGD +G G++FVAC+ C F
Sbjct: 91 AGMVAGSHKRNELVRIRHDSSDSGPKPLKNLNGQICQICGDNVGISATGDVFVACNECGF 270
Query: 57 PVCKPCYEYERSEGNQCCPQCNSRYKRHKGCPRVVGDEDENLDGDDFEDEFPV------- 109
PVC+PCYEYER +GNQ CPQC +RYKR +G RV GDEDE+ D DD E+EF
Sbjct: 271 PVCRPCYEYERKDGNQSCPQCKTRYKRQRGSARVDGDEDED-DVDDLENEFNYVQGNAKA 447
Query: 110 -----KNHHDDLDQNRDVNHVESVDYNQQ------------------------------K 134
+ L RD + N Q
Sbjct: 448 SRQWEEGSDLSLSSRRDPQQPIPLLTNGQTVSGEIPCATPDTQSVRTTSGPLGPGDKAHS 627
Query: 135 LHTFSSAGSVTGKDLEGEKEFYS----NEEWQERVEKWKVRQEKRGLLNKEDGKEDQGE 189
LH V + ++ K+ S N +W+ERVE WK++QEK + + GK +G+
Sbjct: 628 LHYTDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQEKN--MVQMTGKYPEGK 798
Score = 32.0 bits (71), Expect(2) = 9e-35
Identities = 15/27 (55%), Positives = 20/27 (73%)
Frame = +3
Query: 201 PLWRKVPIPSSLINPYRIVIIMRLVIL 227
P+ R VPI S+ I PYR+VII+R + L
Sbjct: 864 PMSRIVPISSTQITPYRVVIILR*LFL 944
>TC14362 similar to UP|AAO25581 (AAO25581) Cellulose synthase, partial (9%)
Length = 741
Score = 142 bits (358), Expect = 3e-34
Identities = 62/96 (64%), Positives = 83/96 (85%)
Frame = +3
Query: 944 LIILNIVGVVAGVSDAINSGSGSWGPLFGKLFFAFWVIVHLYPFLKGLMGKQNRTPTIVV 1003
L+I+NIVG++ G+SDAIN+ SWGPLFG+LFFA W ++HLYPFLKGL+GKQ+R PTIV+
Sbjct: 3 LLIINIVGIIVGISDAINNVYDSWGPLFGRLFFALWFVLHLYPFLKGLLGKQDRMPTIVL 182
Query: 1004 LWSILLASIFSLIWVRIDPFLPKQTGPILKQCGVEC 1039
+WSILLASI +L+WVRI+PF+ + GP+L+ CG+ C
Sbjct: 183 VWSILLASILTLMWVRINPFVSRD-GPVLEICGLNC 287
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.321 0.139 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,474,468
Number of Sequences: 28460
Number of extensions: 337824
Number of successful extensions: 2316
Number of sequences better than 10.0: 80
Number of HSP's better than 10.0 without gapping: 2237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2289
length of query: 1039
length of database: 4,897,600
effective HSP length: 100
effective length of query: 939
effective length of database: 2,051,600
effective search space: 1926452400
effective search space used: 1926452400
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Medicago: description of AC131248.10