BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC130807.9 + phase: 0 /pseudo
(311 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BE122516 84 3e-17
TC18927 similar to PIR|AI2934|AI2934 chromate transport protein ... 59 1e-09
BG662087 35 0.016
AV779679 33 0.081
TC16357 weakly similar to UP|Q8DZP0 (Q8DZP0) Bacterial luciferas... 28 2.6
BP041395 27 3.4
TC9521 similar to UP|Q9FYA7 (Q9FYA7) Splicing factor RSZ33, part... 27 4.4
TC11885 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, parti... 27 4.4
BP072681 27 4.4
TC13053 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, parti... 27 5.8
TC11095 similar to PIR|T05112|T05112 splicing factor 9G8-like SR... 27 5.8
TC14381 similar to UP|RNS2_ARATH (P42814) Ribonuclease 2 precurs... 27 5.8
AV420911 27 5.8
TC18003 similar to PIR|T05112|T05112 splicing factor 9G8-like SR... 27 5.8
TC8573 similar to UP|Q9SIH5 (Q9SIH5) At2g36090 protein, partial ... 26 7.5
TC17753 similar to UP|Q40096 (Q40096) Receptor protein kinase, p... 26 7.5
BP039068 26 9.9
AV775580 26 9.9
TC14325 homologue to UP|Q9FXL2 (Q9FXL2) Vf14-3-3c protein, parti... 26 9.9
TC15762 similar to GB|BAA25822.1|3088342|AB007158 ribosomal prot... 26 9.9
>BE122516
Length = 364
Score = 84.0 bits (206), Expect = 3e-17
Identities = 45/116 (38%), Positives = 72/116 (61%)
Frame = +2
Query: 133 LGMNWLEYNHVHINCFSKSVCFSSAEEESGA*FLSTKQLKQMERDGILMFSLMASLSIEN 192
+GMNWL N +NC K+V F ++E ++ + K K E + ++ + + ++
Sbjct: 14 VGMNWLTANDATLNCRKKTVTFGTSEGDAKRVKRTDKVGKASECESDVLLGALET--DKS 187
Query: 193 QAMIDKL*VVCDFPEVLPDEIPDMPPKREVEFSIDLVPRTKPVSMAPYRMSASELA 248
++ + VV +F +V P+E+ ++PP+REVEFSID VP T P+S+APYRMS ELA
Sbjct: 188 DTGVEGIPVVREFSDVFPEEVSELPPEREVEFSID*VPGTGPISIAPYRMSLVELA 355
>TC18927 similar to PIR|AI2934|AI2934 chromate transport protein chrA
[imported] - Agrobacterium tumefaciens
(strain C58, Dupont) {Agrobacterium tumefaciens;},
partial (6%)
Length = 561
Score = 58.9 bits (141), Expect = 1e-09
Identities = 30/93 (32%), Positives = 42/93 (44%), Gaps = 21/93 (22%)
Frame = -2
Query: 3 DIVCFNCNEEGHIGSQCKQPK---------------------RAPTTGRVFAMAGTQTEN 41
D+VC+NC + GH G C PK R + RV+ ++G ++
Sbjct: 284 DLVCWNCQKTGHSGKDCTNPKVEAATNAIAARRPAPAANKGKRPVASARVYTVSGAESHR 105
Query: 42 EDRLIRGTCYINNTPLVAIIDTGATHCFIAFDC 74
D LIR +N PL + D+GATH FI C
Sbjct: 104 ADGLIRSVGSVNCKPLTILFDSGATHSFIDLAC 6
>BG662087
Length = 373
Score = 35.0 bits (79), Expect = 0.016
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1
Query: 282 GSMRLCIDYRQLNKVTIKNRYPLPRIDDLM 311
G R+ +DY LNK K+ YPLP ID L+
Sbjct: 16 GKWRMWVDYTDLNKACPKDSYPLPSIDKLV 105
>AV779679
Length = 440
Score = 32.7 bits (73), Expect = 0.081
Identities = 14/27 (51%), Positives = 20/27 (73%)
Frame = +3
Query: 283 SMRLCIDYRQLNKVTIKNRYPLPRIDD 309
+M+LC DY QL+ VTI N+ LP +D+
Sbjct: 345 TMQLCDDYMQLDYVTIPNKSLLPHLDE 425
>TC16357 weakly similar to UP|Q8DZP0 (Q8DZP0) Bacterial luciferase family
protein, partial (6%)
Length = 572
Score = 27.7 bits (60), Expect = 2.6
Identities = 15/39 (38%), Positives = 20/39 (50%), Gaps = 2/39 (5%)
Frame = -2
Query: 68 CFIAFDCVSALGLDLSDMNGEMVV--ETPTKGSVTTSLV 104
CF+ FDC L D D NGE+ E +G V +L+
Sbjct: 217 CFLIFDCGVLLSKDW*DQNGELQKD*EADRRGQVQKNLL 101
>BP041395
Length = 487
Score = 27.3 bits (59), Expect = 3.4
Identities = 9/17 (52%), Positives = 11/17 (63%)
Frame = +1
Query: 137 WLEYNHVHINCFSKSVC 153
W HVHI+CF + VC
Sbjct: 133 WFVRRHVHISCFRERVC 183
>TC9521 similar to UP|Q9FYA7 (Q9FYA7) Splicing factor RSZ33, partial (56%)
Length = 598
Score = 26.9 bits (58), Expect = 4.4
Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Frame = +1
Query: 6 CFNCNEEGHIGSQCK-QPKR 24
C+ C E GHI CK PK+
Sbjct: 457 CYRCGERGHIEKNCKNSPKK 516
>TC11885 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, partial (26%)
Length = 555
Score = 26.9 bits (58), Expect = 4.4
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +2
Query: 5 VCFNCNEEGHIGSQC 19
+C+NC E GH+ S C
Sbjct: 455 LCWNCKEPGHMASSC 499
Score = 26.6 bits (57), Expect = 5.8
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 2 NDIVCFNCNEEGHIGSQC 19
N +C NC GHI S+C
Sbjct: 389 NVAICHNCGLPGHIASEC 442
>BP072681
Length = 461
Score = 26.9 bits (58), Expect = 4.4
Identities = 10/28 (35%), Positives = 18/28 (63%)
Frame = -3
Query: 209 LPDEIPDMPPKREVEFSIDLVPRTKPVS 236
LP+++ ++PP S L+PR +P+S
Sbjct: 432 LPNKVNNLPPNSATAHSWSLLPRPRPMS 349
>TC13053 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, partial (9%)
Length = 450
Score = 26.6 bits (57), Expect = 5.8
Identities = 12/36 (33%), Positives = 18/36 (49%), Gaps = 4/36 (11%)
Frame = +3
Query: 4 IVCFNCNEEGHIGSQCK----QPKRAPTTGRVFAMA 35
++C NC GH+ +C + AP T R +MA
Sbjct: 63 MICHNCGGRGHLAYECPSGRFMDRYAPNTRRY*SMA 170
>TC11095 similar to PIR|T05112|T05112 splicing factor 9G8-like SR protein
RSZp22 [validated] - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (89%)
Length = 912
Score = 26.6 bits (57), Expect = 5.8
Identities = 7/19 (36%), Positives = 12/19 (62%)
Frame = +1
Query: 2 NDIVCFNCNEEGHIGSQCK 20
+D+ C+ C E GH +C+
Sbjct: 367 SDMKCYECGEPGHFARECR 423
>TC14381 similar to UP|RNS2_ARATH (P42814) Ribonuclease 2 precursor ,
partial (75%)
Length = 858
Score = 26.6 bits (57), Expect = 5.8
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = -1
Query: 141 NHVHINCFSKSVCFSSAEEESGA*FLSTKQLKQMERDGILMFSLMASLSIENQAMIDKL 199
NH+H S+C +S E L ++R + S+MA++S+ +Q+M+ L
Sbjct: 525 NHIHFEIQEMSMCHASPTHE------PKMFLFHLDRLMVSHSSMMANISLRHQSMLISL 367
>AV420911
Length = 418
Score = 26.6 bits (57), Expect = 5.8
Identities = 7/18 (38%), Positives = 11/18 (60%)
Frame = +2
Query: 3 DIVCFNCNEEGHIGSQCK 20
D+ C+ C E GH +C+
Sbjct: 365 DLKCYECGEPGHFARECR 418
>TC18003 similar to PIR|T05112|T05112 splicing factor 9G8-like SR protein
RSZp22 [validated] - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (42%)
Length = 587
Score = 26.6 bits (57), Expect = 5.8
Identities = 7/18 (38%), Positives = 11/18 (60%)
Frame = +1
Query: 3 DIVCFNCNEEGHIGSQCK 20
D+ C+ C E GH +C+
Sbjct: 157 DLKCYECGEPGHFARECR 210
>TC8573 similar to UP|Q9SIH5 (Q9SIH5) At2g36090 protein, partial (17%)
Length = 515
Score = 26.2 bits (56), Expect = 7.5
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 209 LPDEIPDMPPKREVEFSIDLVPRTKPV 235
LP ++P PP E+ ++DL + KPV
Sbjct: 398 LPHKLPPSPPPPELISAVDLYYKGKPV 478
>TC17753 similar to UP|Q40096 (Q40096) Receptor protein kinase, partial (6%)
Length = 471
Score = 26.2 bits (56), Expect = 7.5
Identities = 11/29 (37%), Positives = 17/29 (57%)
Frame = -3
Query: 1 RNDIVCFNCNEEGHIGSQCKQPKRAPTTG 29
+NDI FNC G + ++ Q ++ TTG
Sbjct: 463 KNDIKQFNCACSGQVHNRLVQNRKCSTTG 377
>BP039068
Length = 467
Score = 25.8 bits (55), Expect = 9.9
Identities = 8/15 (53%), Positives = 9/15 (59%)
Frame = +3
Query: 5 VCFNCNEEGHIGSQC 19
VC NC E GH + C
Sbjct: 309 VCMNCQETGHASNDC 353
>AV775580
Length = 393
Score = 25.8 bits (55), Expect = 9.9
Identities = 15/43 (34%), Positives = 20/43 (45%), Gaps = 8/43 (18%)
Frame = +3
Query: 77 ALGLDLSDMNGEMV--------VETPTKGSVTTSLVCLRCPLS 111
A+G+D + + E +ETP V T L CL PLS
Sbjct: 111 AMGMDTMETSFEQTYRCYPSSFIETPPN*EVVTKLCCLHQPLS 239
>TC14325 homologue to UP|Q9FXL2 (Q9FXL2) Vf14-3-3c protein, partial (94%)
Length = 1080
Score = 25.8 bits (55), Expect = 9.9
Identities = 12/35 (34%), Positives = 20/35 (56%)
Frame = +1
Query: 7 FNCNEEGHIGSQCKQPKRAPTTGRVFAMAGTQTEN 41
F C++ HI S CKQ ++ + ++ TQT+N
Sbjct: 1 FRCSQFTHIHSHCKQQQQQQSQSQI-----TQTKN 90
>TC15762 similar to GB|BAA25822.1|3088342|AB007158 ribosomal protein S23
{Homo sapiens;} , partial (24%)
Length = 572
Score = 25.8 bits (55), Expect = 9.9
Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 19/72 (26%)
Frame = -2
Query: 109 PLSMFGHDFEMDLVCLHL----------SGMDVILGMNWLEYN------HVHINCFSK-- 150
PL F H LVCLHL M ++ +L N VH +CF +
Sbjct: 340 PLPFFPHSPNQMLVCLHLIREKNLGTQQVNMTLLYSQTYLNQN*HLKSSTVHFSCFQQPC 161
Query: 151 -SVCFSSAEEES 161
+ F +EE S
Sbjct: 160 LPLFFQVSEESS 125
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.326 0.140 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,536,641
Number of Sequences: 28460
Number of extensions: 73439
Number of successful extensions: 508
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of query: 311
length of database: 4,897,600
effective HSP length: 90
effective length of query: 221
effective length of database: 2,336,200
effective search space: 516300200
effective search space used: 516300200
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Medicago: description of AC130807.9