BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC130807.5 + phase: 0 /pseudo
(1454 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AU089582 74 2e-19
TC18927 similar to PIR|AI2934|AI2934 chromate transport protein ... 70 2e-12
BE122516 70 2e-12
BF177840 57 2e-08
BI418821 57 2e-08
TC11885 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, parti... 57 3e-08
TC10011 similar to UP|Q9FYA7 (Q9FYA7) Splicing factor RSZ33, par... 51 1e-06
AU251673 48 1e-05
TC9521 similar to UP|Q9FYA7 (Q9FYA7) Splicing factor RSZ33, part... 48 1e-05
AV427422 42 0.001
TC13053 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, parti... 39 0.006
TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase regi... 35 0.11
BP054462 33 0.42
TC17929 32 0.72
TC9039 30 2.7
BP042279 28 7.9
>AU089582
Length = 383
Score = 73.9 bits (180), Expect(2) = 2e-19
Identities = 31/45 (68%), Positives = 37/45 (81%)
Frame = +3
Query: 1367 GTWDSHLPLIEFTYNNGYHSSIGMAPFEALYGQRCRTPLCWFESG 1411
G+WD +L L+EF YNN Y SSI MAPFEALYG+RCR+P+ WFE G
Sbjct: 249 GSWDQYLSLMEFAYNNSYRSSI*MAPFEALYGRRCRSPIGWFEVG 383
Score = 40.0 bits (92), Expect(2) = 2e-19
Identities = 19/30 (63%), Positives = 22/30 (73%)
Frame = +2
Query: 1342 RTDGQSERTIQSLEDLLRVCVLEQGGTWDS 1371
+TDGQSERTIQ LED+LR CV + G S
Sbjct: 173 QTDGQSERTIQILEDMLRACVXDLRGXLGS 262
Score = 32.7 bits (73), Expect(2) = 0.008
Identities = 28/74 (37%), Positives = 37/74 (49%)
Frame = +3
Query: 1099 LSWLRFIFIML*S*MEFLRVLCRIGIRGSPLGSGRVCRTLWVPS*D*VRLIILRQMVSRR 1158
L+ LRF ++ L M +L + +I S G + + LW * *V L IL+ MVS R
Sbjct: 15 LNMLRFTWMRLFPCMVYLCL*FQIEELNSHHIFGGLFKLLWELD*K*VPLFILKLMVSPR 194
Query: 1159 GRSNRWRIC*ECVC 1172
G RIC VC
Sbjct: 195 GLFRS*RICFVLVC 236
Score = 24.6 bits (52), Expect(2) = 0.008
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +1
Query: 1200 WHRSKLCMVGGAG 1212
WH K CMVG AG
Sbjct: 319 WHHLKPCMVGDAG 357
>TC18927 similar to PIR|AI2934|AI2934 chromate transport protein chrA
[imported] - Agrobacterium tumefaciens
(strain C58, Dupont) {Agrobacterium tumefaciens;},
partial (6%)
Length = 561
Score = 70.5 bits (171), Expect = 2e-12
Identities = 49/170 (28%), Positives = 69/170 (39%), Gaps = 21/170 (12%)
Frame = -2
Query: 216 RGKGRQSRPKPYSAPADKGKQRLNDERRPNRRDASAEIVCFKCGEKGHKSNVCTKDEKKC 275
+G G +R P +K Q+ +R NR +S F G + E C
Sbjct: 500 QGSGGPNRSAPGRFDRNKSFQKKPFQRPQNRGTSSGYSHSF--GNFVPRPTQSDTSEIVC 327
Query: 276 FRCGQKGHLLADCKRGDVVCYNCNEEGHISTQCTQPKKDRT------------------- 316
RC +KGH C D+VC+NC + GH CT PK +
Sbjct: 326 HRCSKKGHFANRCP--DLVCWNCQKTGHSGKDCTNPKVEAATNAIAARRPAPAANKGKRP 153
Query: 317 --GGKVFALTGTQTTNEDRLIRGTCFFNSTPLIAIIDTGATHCFIALESA 364
+V+ ++G ++ D LIR N PL + D+GATH FI L A
Sbjct: 152 VASARVYTVSGAESHRADGLIRSVGSVNCKPLTILFDSGATHSFIDLACA 3
>BE122516
Length = 364
Score = 70.5 bits (171), Expect = 2e-12
Identities = 42/113 (37%), Positives = 54/113 (47%), Gaps = 44/113 (38%)
Frame = +2
Query: 423 GMNWLEYNRVHINCFSKTMHFSSAEEE--------------------------------- 449
GMNWL N +NC KT+ F ++E +
Sbjct: 17 GMNWLTANDATLNCRKKTVTFGTSEGDAKRVKRTDKVGKASECESDVLLGALETDKSDTG 196
Query: 450 -----------EVFPDEIPDVPPEREVEFSIDLVPGTKPMSMAPYRMSSSELA 491
+VFP+E+ ++PPEREVEFSID VPGT P+S+APYRMS ELA
Sbjct: 197 VEGIPVVREFSDVFPEEVSELPPEREVEFSID*VPGTGPISIAPYRMSLVELA 355
>BF177840
Length = 410
Score = 57.0 bits (136), Expect = 2e-08
Identities = 34/96 (35%), Positives = 50/96 (51%)
Frame = +2
Query: 1342 RTDGQSERTIQSLEDLLRVCVLEQGGTWDSHLPLIEFTYNNGYHSSIGMAPFEALYGQRC 1401
+TDGQ+E ++L LLR + W++ LP IEF YN HS+ +PFE +YG
Sbjct: 116 QTDGQTEVVNKTLSTLLRSVLERNLKMWETWLPHIEFAYNRVVHSTTKHSPFEIVYGYNP 295
Query: 1402 RTPLCWFESGERVVLGPEIVQQTTEKVKMIQEKMKV 1437
TPL +L + + E VK + EK+K+
Sbjct: 296 LTPLDLLPMPNTYLLKHKDGKAKAEFVKRLHEKIKL 403
>BI418821
Length = 614
Score = 57.0 bits (136), Expect = 2e-08
Identities = 41/145 (28%), Positives = 58/145 (39%), Gaps = 15/145 (10%)
Frame = +2
Query: 181 RAIGYQQIRIFSDLVSRCRICEEDTKAHYKVMSERRGKGRQSRPKPYSAPADKGKQRLND 240
R+ GY+ + + DLV ++ K ++ G Q K SAP G R
Sbjct: 179 RSDGYRTL-LEGDLVEFSIATGDNDKTKAVDVTGPNGAALQPTRKD-SAPRGFGGWR-GG 349
Query: 241 ERRPNRRDASAEIVCFKCGEKGHKSNVCTKDEKK--------CFRCGQKGHLLADCKR-- 290
ERR C+ CG+ GH + C + C+ CG GHL DC R
Sbjct: 350 ERRNGGGGGGGGGGCYNCGDTGHLARDCHRSNNNGGGGGGAACYNCGDAGHLARDCNRSN 529
Query: 291 -----GDVVCYNCNEEGHISTQCTQ 310
G CYNC + GH++ C +
Sbjct: 530 NNSGGGGAGCYNCGDTGHLARDCNR 604
Score = 48.5 bits (114), Expect = 7e-06
Identities = 19/52 (36%), Positives = 25/52 (47%), Gaps = 8/52 (15%)
Frame = +2
Query: 275 CFRCGQKGHLLADCKR--------GDVVCYNCNEEGHISTQCTQPKKDRTGG 318
C+ CG GHL DC R G CYNC + GH++ C + + GG
Sbjct: 392 CYNCGDTGHLARDCHRSNNNGGGGGGAACYNCGDAGHLARDCNRSNNNSGGG 547
Score = 42.7 bits (99), Expect = 4e-04
Identities = 19/68 (27%), Positives = 26/68 (37%), Gaps = 7/68 (10%)
Frame = +2
Query: 232 DKGKQRLNDERRPNRRDASAEIVCFKCGEKGHKSNVCTKDEKK-------CFRCGQKGHL 284
D G + R N C+ CG+ GH + C + C+ CG GHL
Sbjct: 407 DTGHLARDCHRSNNNGGGGGGAACYNCGDAGHLARDCNRSNNNSGGGGAGCYNCGDTGHL 586
Query: 285 LADCKRGD 292
DC R +
Sbjct: 587 ARDCNRSN 610
>TC11885 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, partial (26%)
Length = 555
Score = 56.6 bits (135), Expect = 3e-08
Identities = 29/96 (30%), Positives = 45/96 (46%)
Frame = +2
Query: 213 SERRGKGRQSRPKPYSAPADKGKQRLNDERRPNRRDASAEIVCFKCGEKGHKSNVCTKDE 272
S R + R P +D+ R RR +RR S + +C C GH + C +
Sbjct: 218 SRSRSRSRSRSPMDRKIRSDRFSYRDAPYRRDSRRGFSRDNLCKNCKRPGHFARECP-NV 394
Query: 273 KKCFRCGQKGHLLADCKRGDVVCYNCNEEGHISTQC 308
C CG GH+ ++C + C+NC E GH+++ C
Sbjct: 395 AICHNCGLPGHIASECTTKSL-CWNCKEPGHMASSC 499
>TC10011 similar to UP|Q9FYA7 (Q9FYA7) Splicing factor RSZ33, partial (62%)
Length = 684
Score = 50.8 bits (120), Expect = 1e-06
Identities = 36/108 (33%), Positives = 52/108 (47%), Gaps = 9/108 (8%)
Frame = +2
Query: 227 YSAPADKGKQRLNDERRPNRRDASAEIVCF-KCGEKGHKSNVCT---KDEKKCFRCGQKG 282
+S P D R N + R + S +V F K G +G++ + +CF CG G
Sbjct: 221 FSDPRDADDARYNLDGRDV--EGSRIVVEFAKGGPRGNREYLGRGPPPGSGRCFNCGLDG 394
Query: 283 HLLADCKRGD--VVCYNCNEEGHISTQC-TQPKKD--RTGGKVFALTG 325
H DCK GD CY C + GH+ C PKK+ +T ++F+ TG
Sbjct: 395 HWARDCKAGDWKNKCYRCGDRGHVERNCKNSPKKNEWQTWKELFSFTG 538
>AU251673
Length = 413
Score = 48.1 bits (113), Expect = 1e-05
Identities = 36/139 (25%), Positives = 65/139 (45%), Gaps = 2/139 (1%)
Frame = +2
Query: 70 CSEVKKVRFGTHMLAEEADDWWVSLLPVLEQDEAVVTWAVFRREFLNRYFLEDV*GR--K 127
CS+ + V + L A DW+ L TWA F EF+NR+ + V +
Sbjct: 5 CSDTRAVELASFQLEGVARDWYNVLTRAKPVGSPPWTWADFSAEFMNRFLPQSVRDGFVR 184
Query: 128 EIEFLELK*GDISVVEYAAKFVELAKFYPHYTAETAEFSKCIKFENGLRANIKRAIGYQQ 187
+ E LE G ++V EY+A F L+++ P+ E + +F GL+ + +++ +
Sbjct: 185 DFERLEQAEG-MTVSEYSAHFTHLSRYVPY---PLLEEERVKRFVRGLKEYLFKSVVGSK 352
Query: 188 IRIFSDLVSRCRICEEDTK 206
S+++S + E+ K
Sbjct: 353 SSTLSEVLSLALLVEQRQK 409
>TC9521 similar to UP|Q9FYA7 (Q9FYA7) Splicing factor RSZ33, partial (56%)
Length = 598
Score = 47.8 bits (112), Expect = 1e-05
Identities = 22/43 (51%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +1
Query: 274 KCFRCGQKGHLLADCKRGD--VVCYNCNEEGHISTQC-TQPKK 313
+CF CG GH DCK GD CY C E GHI C PKK
Sbjct: 388 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCKNSPKK 516
Score = 42.4 bits (98), Expect = 5e-04
Identities = 16/37 (43%), Positives = 23/37 (61%), Gaps = 2/37 (5%)
Frame = +1
Query: 255 CFKCGEKGHKSNVCTKDE--KKCFRCGQKGHLLADCK 289
CF CG GH + C + KC+RCG++GH+ +CK
Sbjct: 391 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCK 501
Score = 28.9 bits (63), Expect = 6.1
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 255 CFKCGEKGHKSNVCTKDEKKCFR 277
C++CGE+GH C KK R
Sbjct: 457 CYRCGERGHIEKNCKNSPKKLSR 525
>AV427422
Length = 417
Score = 41.6 bits (96), Expect = 0.001
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +1
Query: 1343 TDGQSERTIQSLEDLLRVCVLEQGGTWDSHLPLIEFTYNNGYHSSIGMAP 1392
+DGQ+E + LE LR + +Q +W +P E+ YN YH S G P
Sbjct: 268 SDGQTEVVNRCLETYLRCFIADQPKSWAHWVPWAEYWYNTSYHVSTGQTP 417
>TC13053 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, partial (9%)
Length = 450
Score = 38.9 bits (89), Expect = 0.006
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 275 CFRCGQKGHLLADCKRGDVVCYNCNEEGHISTQC 308
C C Q GH+ DC ++C+NC GH++ +C
Sbjct: 9 CRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYEC 110
Score = 37.4 bits (85), Expect = 0.017
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +3
Query: 253 IVCFKCGEKGHKSNVCTKDEKKCFRCGQKGHLLADCKRG 291
+VC C + GH S C C CG +GHL +C G
Sbjct: 3 VVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSG 119
>TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase region
(Fragment), partial (10%)
Length = 572
Score = 34.7 bits (78), Expect = 0.11
Identities = 19/64 (29%), Positives = 32/64 (49%)
Frame = +2
Query: 1342 RTDGQSERTIQSLEDLLRVCVLEQGGTWDSHLPLIEFTYNNGYHSSIGMAPFEALYGQRC 1401
+T+GQ+E + + ++ + E G W LP++ ++YN SSI PF YG
Sbjct: 98 QTNGQTEAANKVILKGIKRRLYEAEGRWIDELPIVLWSYNTMPQSSIKETPF*LTYGADT 277
Query: 1402 RTPL 1405
P+
Sbjct: 278 MLPV 289
>BP054462
Length = 422
Score = 32.7 bits (73), Expect = 0.42
Identities = 17/74 (22%), Positives = 37/74 (49%)
Frame = +1
Query: 1381 NNGYHSSIGMAPFEALYGQRCRTPLCWFESGERVVLGPEIVQQTTEKVKMIQEKMKVSHS 1440
N+ Y+ S M+PF+ALYG+ L ++ ++ E + ++ + S
Sbjct: 1 NSNYNRSAKMSPFQALYGREPPVLLQGTTIPSKIAAVNDLQVGRDELLSDLRANLLKSQD 180
Query: 1441 RQKSYHDKRRKDLE 1454
++Y +K+R+D++
Sbjct: 181 MMRTYANKKRRDVD 222
>TC17929
Length = 791
Score = 32.0 bits (71), Expect = 0.72
Identities = 13/29 (44%), Positives = 17/29 (57%)
Frame = +2
Query: 243 RPNRRDASAEIVCFKCGEKGHKSNVCTKD 271
RPN D+ C++CGE GHK C K+
Sbjct: 32 RPN--DSKFRQTCYRCGESGHKMRNCPKE 112
>TC9039
Length = 1218
Score = 30.0 bits (66), Expect = 2.7
Identities = 20/71 (28%), Positives = 29/71 (40%)
Frame = +2
Query: 240 DERRPNRRDASAEIVCFKCGEKGHKSNVCTKDEKKCFRCGQKGHLLADCKRGDVVCYNCN 299
+ER R SA V + K V K+E +K ++ D CY CN
Sbjct: 701 EERLKQERKESAHFVSTSKDKGKRKKTVEPKNEAADAPAPKK-------QKEDDTCYFCN 859
Query: 300 EEGHISTQCTQ 310
GH+ +CT+
Sbjct: 860 VSGHMKKKCTK 892
>BP042279
Length = 252
Score = 28.5 bits (62), Expect = 7.9
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Frame = +1
Query: 255 CFKCGEKGHKSNVCTKDEKKCFRCGQKGHLLADCK------RGDVVCYNCNEEGHISTQC 308
C C G K +C CG +G +++ + + + C +CN G ST C
Sbjct: 13 CGTCNGTGAKPGT---KSSRCSTCGGQGRVVSSTRTPLGIFQQSMTCSSCNGTGETSTPC 183
Query: 309 T 309
+
Sbjct: 184 S 186
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.351 0.154 0.543
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,449,161
Number of Sequences: 28460
Number of extensions: 419844
Number of successful extensions: 3547
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 3327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3518
length of query: 1454
length of database: 4,897,600
effective HSP length: 102
effective length of query: 1352
effective length of database: 1,994,680
effective search space: 2696807360
effective search space used: 2696807360
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 61 (28.1 bits)
Medicago: description of AC130807.5