TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC130807.11 - phase: 0 
         (261 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC19629                                                               114  2e-26
TC9670 homologue to UP|O64958 (O64958) CUM1, partial (65%)             32  0.14
AU089225                                                               28  1.2
TC19266 similar to UP|Q8L884 (Q8L884) Auxin influx carrier prote...    28  1.6
TC15219 similar to PIR|T00986|T00986 yeast pheromone receptor-li...    28  1.6
TC12971 similar to GB|AAN73294.1|25141199|BT002297 At5g12010/F14...    28  1.6
TC17108 homologue to UP|Q84UD8 (Q84UD8) Apyrase-like protein, pa...    27  3.5
AV779613                                                               27  3.5
TC12995                                                                27  4.6
TC10824 weakly similar to UP|Q8L5A7 (Q8L5A7) Steroid sulfotransf...    26  6.1
TC18821 weakly similar to UP|SRP_DROME (P52172) Box A-binding fa...    26  7.9
BU494436                                                               26  7.9
TC18958                                                                26  7.9
TC17558                                                                26  7.9
TC16495 similar to UP|Q9LUA5 (Q9LUA5) Genomic DNA, chromosome 3,...    26  7.9
AI967736                                                               26  7.9

>TC19629 
          Length = 485

 Score =  114 bits (285), Expect = 2e-26
 Identities = 52/61 (85%), Positives = 56/61 (91%)
 Frame = +3

Query: 197 SSGYSFSISWISRAPGEEAELLYHVLSLGTLERLAPEWMREDIMFSPTMCPIFFERVTHV 256
           SSGYSFS+SWI +A GEE ELLYHVLSLGT ER+APEWMREDIMFSPTMCP FFERV+HV
Sbjct: 3   SSGYSFSLSWIGKASGEEVELLYHVLSLGTFERVAPEWMREDIMFSPTMCPTFFERVSHV 182

Query: 257 I 257
           I
Sbjct: 183 I 185


>TC9670 homologue to UP|O64958 (O64958) CUM1, partial (65%)
          Length = 1060

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 33/127 (25%), Positives = 55/127 (42%), Gaps = 24/127 (18%)
 Frame = +3

Query: 39  SAAEDVIDHLRTENDKLLGQINDLGNE----------LTSVRVAKDNELVEHKRLLLEEK 88
           SA+E      + E DKL  QI++L N             + +  K+ E    K +     
Sbjct: 219 SASEANAQFYQQEADKLRVQISNLQNNNRQMMGESLGSMNAKELKNLETKLEKGISRIRS 398

Query: 89  KKNEALFEEVEKLQK----------LLKEGTSGDLSNRK----VVNNTSNNSSIRMTRKR 134
           KKNE LF E+E +QK          LL+   +    N      +  +TSN  S++  +++
Sbjct: 399 KKNELLFAEIEYMQKREIDLHNNNQLLRAKIAESERNHPNLSILAGSTSNYESMQSQQQQ 578

Query: 135 MRQEQDA 141
            +Q+ D+
Sbjct: 579 QQQQFDS 599


>AU089225 
          Length = 651

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = +2

Query: 11  KYTTL-KTNKLSELEDVHKEQELKFLKFVSAAEDVI-DHLRTENDKLLGQINDLG 63
           KY  L KTN + E + V+ +  L+FL  V  +EDVI D+L      L+ + ND G
Sbjct: 191 KYKRLRKTNPVIERDIVNNKAALEFLTVVGFSEDVIFDNLGKAEAYLVLKRNDPG 355


>TC19266 similar to UP|Q8L884 (Q8L884) Auxin influx carrier protein, partial
           (17%)
          Length = 549

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 173 EYTLDMKLSTDCQTGRLCLSAMH 195
           E  L   L + CQ G LCLS+MH
Sbjct: 46  ERMLQRSLLSSCQAGLLCLSSMH 114


>TC15219 similar to PIR|T00986|T00986 yeast pheromone receptor-like protein
           AR781 [imported] -                Arabidopsis thaliana
           {Arabidopsis thaliana;}, partial (11%)
          Length = 571

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 15/52 (28%), Positives = 22/52 (41%)
 Frame = +2

Query: 169 HALFEYTLDMKLSTDCQTGRLCLSAMHQSSGYSFSISWISRAPGEEAELLYH 220
           ++ F+Y     L  DC  G           G++FS+   S  P   AE L+H
Sbjct: 302 YSQFDYFTGSNLDGDCDGG---------DDGFAFSVGGGSETPSRSAEELFH 430


>TC12971 similar to GB|AAN73294.1|25141199|BT002297 At5g12010/F14F18_180
           {Arabidopsis thaliana;}, partial (7%)
          Length = 721

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 22/89 (24%), Positives = 40/89 (44%)
 Frame = +3

Query: 77  LVEHKRLLLEEKKKNEALFEEVEKLQKLLKEGTSGDLSNRKVVNNTSNNSSIRMTRKRMR 136
           L  H  + L      E+L      LQ    +    + +N    NN +++++   TRKR R
Sbjct: 57  LTSHSFMKLPTFADPESLSYVYTLLQSSFDQMNDPNNNNNNNYNNNNSSATSVNTRKRRR 236

Query: 137 QEQDALDIEARCIPSENEGVDTQESDHQN 165
           + +   D+    IPS N   + +E D+++
Sbjct: 237 KVKGDDDVGGDEIPSNNR--EEEEGDNKS 317


>TC17108 homologue to UP|Q84UD8 (Q84UD8) Apyrase-like protein, partial (16%)
          Length = 573

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 161 SDHQNWLVHALFEYTLDMKLSTDCQTGRLCLSAMHQSSGYSFS 203
           SD + WL+H++    L  K    C    L L+   +S  YSF+
Sbjct: 443 SDLRLWLIHSIH*VRLRNKNGDTCTISFLSLNGYIRSKSYSFN 571


>AV779613 
          Length = 315

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 15/42 (35%), Positives = 24/42 (56%)
 Frame = +1

Query: 118 VVNNTSNNSSIRMTRKRMRQEQDALDIEARCIPSENEGVDTQ 159
           + NNT NN+ ++ T  R R+++ +   E     SE+ GVD Q
Sbjct: 91  IENNTQNNNDLQSTDVRGRRKEPSQSSE-----SEHTGVDWQ 201


>TC12995 
          Length = 513

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 18/74 (24%), Positives = 33/74 (44%)
 Frame = -1

Query: 120 NNTSNNSSIRMTRKRMRQEQDALDIEARCIPSENEGVDTQESDHQNWLVHALFEYTLDMK 179
           +NT ++S++   R R     +  +  ARC   E   +  Q+S  + WL        L+  
Sbjct: 234 SNTPSSSNLCCCRSRALNSSNPSNASARCW*DEVSNLRWQDSAEEEWL-------RLETA 76

Query: 180 LSTDCQTGRLCLSA 193
           ++T  +   LC +A
Sbjct: 75  VATCSEHSLLCETA 34


>TC10824 weakly similar to UP|Q8L5A7 (Q8L5A7) Steroid sulfotransferase-like
           protein (At5g07010), partial (39%)
          Length = 604

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 29/109 (26%), Positives = 47/109 (42%), Gaps = 21/109 (19%)
 Frame = +1

Query: 24  EDVHKEQELKFLKFVSAAEDVIDHLRTENDKL---------LGQINDLGNELTSVRVAKD 74
           E V +  ++ FLK+    EDV  H++  ++ L          G++ +   +L S    KD
Sbjct: 115 ESVARPNKVLFLKYEDLKEDVNFHVKRISEFLGVPFTQEEESGEVVENIIKLCSFEKMKD 294

Query: 75  NELVEHKRLLLEEKKK------------NEALFEEVEKLQKLLKEGTSG 111
            E+ +   L L  +KK            N      VEKL K+++E  SG
Sbjct: 295 LEVNKSGTLGLNFEKKYFFRKAEIGDWVNYLSPSMVEKLSKIMEEKLSG 441


>TC18821 weakly similar to UP|SRP_DROME (P52172) Box A-binding factor (ABF)
           (Serpent protein) (GATA-binding factor-B) (Transcription
           factor GATA-B) (dGATA-B), partial (3%)
          Length = 767

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 28/104 (26%), Positives = 48/104 (45%), Gaps = 9/104 (8%)
 Frame = +1

Query: 48  LRTENDKLLGQINDLGNELTSV----RVAKDNELVEH-----KRLLLEEKKKNEALFEEV 98
           ++T   +LL   + + + +  V    +V KD +LV       +RLLLEE+   E   EEV
Sbjct: 331 IQTLEHRLLSSPSSVSDAVAKVASLLQVLKDKDLVLESGSSLRRLLLEEENTEEKESEEV 510

Query: 99  EKLQKLLKEGTSGDLSNRKVVNNTSNNSSIRMTRKRMRQEQDAL 142
            + +K +        ++R    +T    S     + +RQ Q+AL
Sbjct: 511 IEHEKEIVVVEEAAAASRVEKRSTLRVGS---EGEEVRQMQEAL 633


>BU494436 
          Length = 449

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +1

Query: 76  ELVEHKRLLLEEKKKNEALFEEVEKLQKLLKEGT 109
           +LVE  +L L++ ++ E L  E+  L+ L K+G+
Sbjct: 271 QLVEQGKLHLDDGEETEKLLPELRDLKVLQKDGS 372


>TC18958 
          Length = 540

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 12/41 (29%), Positives = 21/41 (50%)
 Frame = +2

Query: 166 WLVHALFEYTLDMKLSTDCQTGRLCLSAMHQSSGYSFSISW 206
           W++H +  Y+   K   +C+T     S +H    YSFS+ +
Sbjct: 305 WIMHLISSYSASNKEHQNCETYSFHWSLVH----YSFSLMY 415


>TC17558 
          Length = 543

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 157 DTQESDHQNWLVHAL 171
           D+Q+  HQNW  HAL
Sbjct: 102 DSQQKFHQNWYFHAL 58


>TC16495 similar to UP|Q9LUA5 (Q9LUA5) Genomic DNA, chromosome 3, P1 clone:
           MPE11, partial (14%)
          Length = 919

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 120 NNTSNNSSIRMTRKRMRQEQDALDIEARCIPSENEGVDTQESD 162
           NN +NN+    TRKR+R++    D     +P  + G D    +
Sbjct: 373 NNNNNNND---TRKRVREDNSEADSPESKLPRLSSGPDVNSPE 492


>AI967736 
          Length = 334

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 19/75 (25%), Positives = 39/75 (51%), Gaps = 5/75 (6%)
 Frame = +2

Query: 15  LKTNKLSELEDVHKEQELKFLKFVSAAEDVIDHLRTENDKLLGQIN---DLGNELTSVRV 71
           LK N  +++ ++H+    + L ++   + ++DH   E    LG +N   +L N  T   V
Sbjct: 104 LKRN--ADVHEIHRRTHFQSLSYIGLPKTILDH---ERIIWLGDLNYRINLSNVETRALV 268

Query: 72  AKD--NELVEHKRLL 84
           +K   ++L+E  +L+
Sbjct: 269 SKKQWSKLIEKDQLI 313


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.315    0.131    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,899,793
Number of Sequences: 28460
Number of extensions: 49154
Number of successful extensions: 172
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of query: 261
length of database: 4,897,600
effective HSP length: 88
effective length of query: 173
effective length of database: 2,393,120
effective search space: 414009760
effective search space used: 414009760
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)