TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC130807.10 - phase: 0 /pseudo
         (530 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AW720443                                                               31  0.43
BP067396                                                               28  4.8
TC9253 weakly similar to UP|Q9XI93 (Q9XI93) F7A19.2 protein (F16...    27  6.3
AV779571                                                               27  8.2
BP082711                                                               27  8.2
TC14908 weakly similar to PIR|A86218|A86218 protein T27G7.18 [im...    27  8.2

>AW720443 
          Length = 406

 Score = 31.2 bits (69), Expect = 0.43
 Identities = 19/33 (57%), Positives = 23/33 (69%)
 Frame = +3

Query: 322 LVSLIVLL*LLL*ILVLLIVSLLLNVHISWVWF 354
           L S ++LL  LL*+LVLLIVS LL+  I W  F
Sbjct: 204 LDSRMMLLSTLL*LLVLLIVSPLLSQSIQWTGF 302


>BP067396 
          Length = 506

 Score = 27.7 bits (60), Expect = 4.8
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 11/61 (18%)
 Frame = -2

Query: 241 SVAIKATRVMFVPKMRR-----------SASGVVRRVTH*LIVRGETLFAITTMKRAISV 289
           ++ ++ATR  F PK+R+           SA G+ R++TH*        F I  M   + V
Sbjct: 463 TIVLRATRNCFTPKLRKEVILVFLLAAQSA*GITRKLTH*------GCFLIVAMSTTLHV 302

Query: 290 L 290
           L
Sbjct: 301 L 299


>TC9253 weakly similar to UP|Q9XI93 (Q9XI93) F7A19.2 protein (F16A14.14)
           (AT1G13930/F16A14.27), partial (46%)
          Length = 745

 Score = 27.3 bits (59), Expect = 6.3
 Identities = 18/46 (39%), Positives = 29/46 (62%), Gaps = 1/46 (2%)
 Frame = +2

Query: 313 LMRTDLSEVLVSLIV-LL*LLL*ILVLLIVSLLLNVHISWVWFYLI 357
           L+R  ++  ++SL+V LL LLL     L VS+LLN+ +  VW  ++
Sbjct: 278 LIRLRITSTIISLVVLLLLLLLPNQKNLKVSMLLNLLVEVVWVEIL 415


>AV779571 
          Length = 538

 Score = 26.9 bits (58), Expect = 8.2
 Identities = 20/58 (34%), Positives = 37/58 (63%)
 Frame = -2

Query: 321 VLVSLIVLL*LLL*ILVLLIVSLLLNVHISWVWFYLI*KEKWLLKLQLRV**LLLLFV 378
           +++  ++L  LLL +L+LLIV ++L++ I  V    +     LLK++LR+  LL+L +
Sbjct: 321 LIIYHLLLSLLLLLLLLLLIVIMILSLTIE*VLML*V-----LLKMRLRLQQLLILLI 163


>BP082711 
          Length = 379

 Score = 26.9 bits (58), Expect = 8.2
 Identities = 16/37 (43%), Positives = 24/37 (64%)
 Frame = -1

Query: 309 VRRLLMRTDLSEVLVSLIVLL*LLL*ILVLLIVSLLL 345
           V   LMR+   E  +  ++LL LLL +L+LL++ LLL
Sbjct: 286 VEMWLMRSSFGES*LMFLLLLLLLLLLLLLLLLLLLL 176


>TC14908 weakly similar to PIR|A86218|A86218 protein T27G7.18 [imported] -
           Arabidopsis thaliana {Arabidopsis thaliana;}, partial
           (68%)
          Length = 1219

 Score = 26.9 bits (58), Expect = 8.2
 Identities = 15/37 (40%), Positives = 22/37 (58%)
 Frame = +2

Query: 93  CSGENF*TGTSRKMSEVRKRLNFWS*SRVTCLLLSML 129
           CS   F T TSRKM + R+  +    S+V+C LL ++
Sbjct: 59  CSASTF-THTSRKMEQGRRSSSCLLCSKVSCFLLLLI 166


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.370    0.167    0.608 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,002,731
Number of Sequences: 28460
Number of extensions: 107762
Number of successful extensions: 1633
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 660
Number of HSP's gapped (non-prelim): 956
length of query: 530
length of database: 4,897,600
effective HSP length: 95
effective length of query: 435
effective length of database: 2,193,900
effective search space: 954346500
effective search space used: 954346500
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.8 bits)
S2: 57 (26.6 bits)