TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC130802.9 + phase: 0 /pseudo
         (937 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-rela...   130  7e-31
BP075943                                                               76  3e-14
BP066094                                                               71  9e-13
AV424544                                                               55  7e-08
TC17418 similar to UP|Q94AX2 (Q94AX2) AT5g39790/MKM21_80, partia...    44  9e-05
AV780009                                                               39  0.003
BP037734                                                               31  1.0
AV419677                                                               30  1.4

>TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-related Pol
           polyprotein from transposon TNT 1-94 [Contains: Protease
           ; Reverse transcriptase ; Endonuclease] , partial (9%)
          Length = 747

 Score =  130 bits (328), Expect = 7e-31
 Identities = 66/149 (44%), Positives = 92/149 (61%)
 Frame = +2

Query: 582 FDEFLLKTGFVRSGYDSCVYMLKKNEKVILYLLLYVDDILMASSSKDEIMKLKERLNGEF 641
           FD F++  G+ R   D C Y  + ++   + LLLYVDD+L+   +KD + +LK +L  EF
Sbjct: 2   FDSFIMSLGYNRLSSDHCTYHKRFDDNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREF 181

Query: 642 EMKDLGPAKRVLGIDIKRNRDKGELFLSQLGYLKKGGERFRMSNSKTVSTPLGHHTKLSI 701
           +MKDLGPA ++LG+ I R+R    ++LSQ  YL+K   RF M +   +STPL  + KLS 
Sbjct: 182 DMKDLGPANKILGMQIHRDRKDRRIWLSQKNYLQKVLRRFNMQDCNPISTPLPVNYKLSS 361

Query: 702 QQCPQSEDEKQLMEGTPYASGVGSIMYGM 730
              P SE E+  M   PYAS VGS+MY M
Sbjct: 362 SMIPSSEAERMEMSRVPYASAVGSLMYAM 448


>BP075943 
          Length = 547

 Score = 75.9 bits (185), Expect = 3e-14
 Identities = 62/178 (34%), Positives = 90/178 (49%), Gaps = 14/178 (7%)
 Frame = -3

Query: 613 LLLYVDDILMASSSKDEIMKLKERLNGEFEMKDLGPAKRVLGIDIKR-------NRDKGE 665
           LLLYVDD+L+A +   EI  +K  L+ +F +KDLG AK  LG++I R       N+ K  
Sbjct: 521 LLLYVDDVLLAGNDMHEIQLVKSSLHDQFRIKDLGEAKYFLGLEIARSTSGIVLNQRKYA 342

Query: 666 L-FLSQLGYLKKGGERFRMSNSKTVSTPLGHHTKLSIQQCPQSEDEKQLMEGTP------ 718
           L  +S  G+    G + R  +  T S  LG +T                  GTP      
Sbjct: 341 LQLISDSGHF---GFQPRFYSHGTNSQTLGTNT------------------GTPLTDIGS 225

Query: 719 YASGVGSIMYGMVCSRPDLAYAVSIVSRFMANPGIVHWQALKWVLRYLNGSLKGGLKY 776
           Y   VG ++Y +  +RPD+ +AV+ +S+F++ P  +H Q L   L+YL GS   GL Y
Sbjct: 224 YRRIVGRLLY-LNTTRPDITFAVNQLSQFLSAPTDIHEQQLTGFLKYL*GSPGSGLFY 54


>BP066094 
          Length = 532

 Score = 70.9 bits (172), Expect = 9e-13
 Identities = 37/91 (40%), Positives = 54/91 (58%)
 Frame = +2

Query: 565 EESLYGLKQSPREWYRRFDEFLLKTGFVRSGYDSCVYMLKKNEKVILYLLLYVDDILMAS 624
           ++SLYGLKQ+PR WY R   FLL+   VR   D+ ++  K  +  IL + +YVDDI+  S
Sbjct: 260 KKSLYGLKQAPRAWYERLSSFLLENEXVRGKVDTTLF-CKTYKDDILIVQIYVDDIIFGS 436

Query: 625 SSKDEIMKLKERLNGEFEMKDLGPAKRVLGI 655
           ++     +  E +  EFEM+ +G  K  LGI
Sbjct: 437 ANPSLCKEFSEMMQAEFEMRMMGELKYFLGI 529


>AV424544 
          Length = 276

 Score = 54.7 bits (130), Expect = 7e-08
 Identities = 30/93 (32%), Positives = 55/93 (58%)
 Frame = +3

Query: 581 RFDEFLLKTGFVRSGYDSCVYMLKKNEKVILYLLLYVDDILMASSSKDEIMKLKERLNGE 640
           +   +L   G+++S +D  ++  K  +     +L+YVDD+++A +  +EI  +K +L+ +
Sbjct: 6   KLSSYLHILGYIQSAHDHSLFT-KFRDASFTVILVYVDDLILAGNDLNEIQCVKNKLDIQ 182

Query: 641 FEMKDLGPAKRVLGIDIKRNRDKGELFLSQLGY 673
           F +KDLG  K  LG+++ R+     LFLSQ  Y
Sbjct: 183 FRIKDLGTLKYFLGLEVARS--SCGLFLSQRKY 275


>TC17418 similar to UP|Q94AX2 (Q94AX2) AT5g39790/MKM21_80, partial (20%)
          Length = 739

 Score = 44.3 bits (103), Expect = 9e-05
 Identities = 32/96 (33%), Positives = 54/96 (55%)
 Frame = -1

Query: 679 ERFRMSNSKTVSTPLGHHTKLSIQQCPQSEDEKQLMEGTPYASGVGSIMYGMVCSRPDLA 738
           ++F+M+NSK +ST +G      I+   ++  ++  ++ T Y S +GS+ Y +   R D+ 
Sbjct: 712 KKFKMTNSKYISTTIGGK---EIEAGRRNGGKR--VDSTYYKSLIGSVRY-LNTVRSDIV 551

Query: 739 YAVSIVSRFMANPGIVHWQALKWVLRYLNGSLKGGL 774
             V + SRFM  P   H Q  +  LRY+ G+LK G+
Sbjct: 550 CGVGLRSRFM-EP*DCH*QGAQRSLRYIKGTLKDGI 446


>AV780009 
          Length = 529

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 21/54 (38%), Positives = 33/54 (60%)
 Frame = -1

Query: 757 QALKWVLRYLNGSLKGGLKYTRAAQDEDALEGYVDADYAGNVDTRKSLVGFCVY 810
           QA   VLRY+ G+   GL ++  A     L+ Y D+D+AG  DTR+S+ G+ ++
Sbjct: 529 QAATRVLRYVKGAPAQGLFFS--ADSPLKLQAYSDSDWAGCPDTRRSVTGYSIF 374


>BP037734 
          Length = 490

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +2

Query: 568 LYGLKQSPREWYRRF 582
           LYGLKQ PR+W+ RF
Sbjct: 194 LYGLKQLPRDWFERF 238


>AV419677 
          Length = 411

 Score = 30.4 bits (67), Expect = 1.4
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +3

Query: 724 GSIMYGMVCSRPDLAYAVSIVSRFMANPGIVHWQALKWVLRYLNGSLKGG 773
           G +    VC +  L ++V +  R      ++ +Q   W+L Y N S++ G
Sbjct: 69  GCLRLFYVCQKESLGFSVKVNQRSCLPNYLIRFQNFWWILHYTNNSMR*G 218


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.356    0.161    0.595 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,867,052
Number of Sequences: 28460
Number of extensions: 226867
Number of successful extensions: 1950
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1401
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 506
Number of HSP's gapped (non-prelim): 1492
length of query: 937
length of database: 4,897,600
effective HSP length: 99
effective length of query: 838
effective length of database: 2,080,060
effective search space: 1743090280
effective search space used: 1743090280
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.6 bits)
S2: 60 (27.7 bits)