TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC130801.12 + phase: 0 
         (124 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC8877 similar to UP|O65917 (O65917) Dehydroquinate dehydratase/...    40  1e-04
AF000398                                                               31  0.071
TC16696 similar to UP|Q9AR81 (Q9AR81) Germin-like protein precur...    25  3.9
TC14933 homologue to UP|TCMO_GLYEC (Q96423) Trans-cinnamate 4-mo...    25  3.9
BP060159                                                               24  6.6
TC16219                                                                24  8.7

>TC8877 similar to UP|O65917 (O65917) Dehydroquinate
           dehydratase/shikimate:NADP oxidoreductase
           (3-dehydroquinate dehydratase) , partial (15%)
          Length = 661

 Score = 40.0 bits (92), Expect = 1e-04
 Identities = 21/37 (56%), Positives = 23/37 (61%), Gaps = 5/37 (13%)
 Frame = +3

Query: 71  GAILANATPIGMHPDTDRIPVAE-----YQLVFDAVY 102
           G ILAN T IGM P  D  PV++     Y LVFDAVY
Sbjct: 6   GMILANTTSIGMQPKVDETPVSKHALKFYSLVFDAVY 116


>AF000398 
          Length = 119

 Score = 30.8 bits (68), Expect = 0.071
 Identities = 16/22 (72%), Positives = 18/22 (81%), Gaps = 2/22 (9%)
 Frame = +1

Query: 9  PLDGRLFV--RAGGAGKALAFG 28
          PL G+LFV   AGGAGKALA+G
Sbjct: 52 PLAGKLFVVIGAGGAGKALAYG 117


>TC16696 similar to UP|Q9AR81 (Q9AR81) Germin-like protein precursor,
           partial (96%)
          Length = 834

 Score = 25.0 bits (53), Expect = 3.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 96  LVFDAVYLHFYIKLGGSKAVLFPSF 120
           +VF    +HF I  GGS A+ F SF
Sbjct: 406 MVFPQGLVHFQIHDGGSSALAFVSF 480


>TC14933 homologue to UP|TCMO_GLYEC (Q96423) Trans-cinnamate 4-monooxygenase
            (Cinnamic acid 4-hydroxylase) (CA4H) (C4H) (P450C4H)
           (Cytochrome P450 73) , partial (57%)
          Length = 917

 Score = 25.0 bits (53), Expect = 3.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 23  KALAFGAKTRGARIVIFDIDFDKSRSLACAVFGE 56
           + + FG++TR    V+FDI   K + +   V+GE
Sbjct: 337 QGVEFGSRTRN---VVFDIFTGKGQDMVFTVYGE 429


>BP060159 
          Length = 254

 Score = 24.3 bits (51), Expect = 6.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 98  FDAVYLHFYIKLGGSKAVLFPSFWC 122
           FD + L  Y+K   S+ ++FP F C
Sbjct: 74  FDEIILTLYLKKSASECIIFP-FLC 3


>TC16219 
          Length = 430

 Score = 23.9 bits (50), Expect = 8.7
 Identities = 11/31 (35%), Positives = 19/31 (60%)
 Frame = -1

Query: 62  NLVNFQPVKGAILANATPIGMHPDTDRIPVA 92
           NL NF P   +  +++T I ++P+T + P A
Sbjct: 277 NLHNFHPPSSSSSSSSTHILLNPETTKNPNA 185


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.327    0.143    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,937,371
Number of Sequences: 28460
Number of extensions: 19463
Number of successful extensions: 118
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of query: 124
length of database: 4,897,600
effective HSP length: 79
effective length of query: 45
effective length of database: 2,649,260
effective search space: 119216700
effective search space used: 119216700
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.9 bits)