TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC130275.9 + phase: 0 
         (487 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP068909                                                               42  3e-04
TC12196 weakly similar to UP|Q39061 (Q39061) RNA-binding protein...    29  2.0
BI420122                                                               28  2.6
TC15238                                                                28  2.6
AV769189                                                               28  4.4
BP082000                                                               27  5.7
AV776171                                                               27  9.8
BP081003                                                               27  9.8
BP074379                                                               27  9.8
BP042916                                                               27  9.8

>BP068909 
          Length = 279

 Score = 41.6 bits (96), Expect = 3e-04
 Identities = 14/26 (53%), Positives = 22/26 (83%)
 Frame = +3

Query: 57  EPKAYIPSNISIGPYHYGSQHLQEME 82
           + KAY+P  +S+GPYH+G +HL++ME
Sbjct: 117 DDKAYVPQIVSLGPYHHGKEHLRQME 194


>TC12196 weakly similar to UP|Q39061 (Q39061) RNA-binding protein cp33
           (AT3g52380/F22O6_240), partial (19%)
          Length = 552

 Score = 28.9 bits (63), Expect = 2.0
 Identities = 11/26 (42%), Positives = 18/26 (68%)
 Frame = +3

Query: 50  PPNMLNVEPKAYIPSNISIGPYHYGS 75
           PP  LN++PK + PS++S+  +H  S
Sbjct: 102 PPKPLNLKPKLFSPSSLSLYRFHLPS 179


>BI420122 
          Length = 590

 Score = 28.5 bits (62), Expect = 2.6
 Identities = 17/44 (38%), Positives = 24/44 (53%), Gaps = 5/44 (11%)
 Frame = -2

Query: 169 IRREMIMLENQ-LPMFVLTKLFELT----DKNNSLHPQMSFYNL 207
           +R    ++ +Q L  FVL  L +L     D+NNS HP+M  Y L
Sbjct: 478 VRTSSQLIHHQCLAFFVLIHLLQLGS*IFDRNNSKHPEMQLYPL 347


>TC15238 
          Length = 665

 Score = 28.5 bits (62), Expect = 2.6
 Identities = 10/21 (47%), Positives = 15/21 (70%)
 Frame = -3

Query: 243 YNIRPKLIGEEPRGCQSQMIH 263
           YN+RPK+  + P+  Q QM+H
Sbjct: 597 YNLRPKMNSDNPKNKQRQMMH 535


>AV769189 
          Length = 410

 Score = 27.7 bits (60), Expect = 4.4
 Identities = 13/41 (31%), Positives = 19/41 (45%)
 Frame = +3

Query: 274 KIKACESRELMDISFGKKWGIMVKELTIPPLYIGDHRGTVF 314
           K+ AC SR       G+  G   K L++  +Y   H G +F
Sbjct: 234 KVSACSSRTSTSPIVGRSSGSCFKHLSMISMYTA*HSGAIF 356


>BP082000 
          Length = 362

 Score = 27.3 bits (59), Expect = 5.7
 Identities = 13/41 (31%), Positives = 24/41 (57%)
 Frame = +3

Query: 7   KLIKRKFHGTAVKSSKFWRGLVEKELQSIKPEEKNESVCIY 47
           KL+  ++HG +   S F+  LVE ++++   +  N S CI+
Sbjct: 162 KLL*GQYHGKSWPKSHFYMHLVEYQVRASPKKSFNRSHCIH 284


>AV776171 
          Length = 184

 Score = 26.6 bits (57), Expect = 9.8
 Identities = 9/27 (33%), Positives = 16/27 (58%)
 Frame = -1

Query: 413 YLTSWAVGLSTLGALLALYFTFIQAIC 439
           +L  W++ L  L  +L  Y+ F+ A+C
Sbjct: 163 WLIHWSIYLYLLSCILTSYYVFVVALC 83


>BP081003 
          Length = 205

 Score = 26.6 bits (57), Expect = 9.8
 Identities = 18/39 (46%), Positives = 22/39 (56%)
 Frame = -1

Query: 387 LYNVVNEANEYLGCWRARFRASLVHNYLTSWAVGLSTLG 425
           LY VV  A E L CWRA +  S+  N+L  WA+    LG
Sbjct: 118 LYFVVL-AMENLLCWRALYSFSVG*NHLLFWALHGLCLG 5


>BP074379 
          Length = 465

 Score = 26.6 bits (57), Expect = 9.8
 Identities = 9/17 (52%), Positives = 12/17 (69%)
 Frame = +1

Query: 10  KRKFHGTAVKSSKFWRG 26
           K +FHGT VK ++ W G
Sbjct: 127 KMQFHGTQVKENQLWEG 177


>BP042916 
          Length = 490

 Score = 26.6 bits (57), Expect = 9.8
 Identities = 16/42 (38%), Positives = 21/42 (49%), Gaps = 1/42 (2%)
 Frame = +3

Query: 380 PDMNESYLYNVVNEANEYLG-CWRARFRASLVHNYLTSWAVG 420
           P++ + YLYN   E+ EYL   WR   R   +    TS A G
Sbjct: 66  PEILKKYLYNKTVESLEYLSPWWRLSMRNPALIKLNTSSAAG 191


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.322    0.138    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,786,915
Number of Sequences: 28460
Number of extensions: 119615
Number of successful extensions: 526
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of query: 487
length of database: 4,897,600
effective HSP length: 94
effective length of query: 393
effective length of database: 2,222,360
effective search space: 873387480
effective search space used: 873387480
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)