TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC130200.5 - phase: 0 
         (312 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP040489                                                               79  3e-16
TC12055 homologue to UP|Q8L3R8 (Q8L3R8) AT3g08530/T8G24_1, parti...    32  0.18
TC17407                                                                29  0.90
BP036426                                                               28  1.5
TC16155                                                                28  2.6
TC9100 similar to UP|Q8W544 (Q8W544) NADH-ubiquinone oxidoreduct...    27  5.8
TC11107                                                                26  7.6
BP040791                                                               26  7.6

>BP040489 
          Length = 555

 Score = 79.0 bits (193), Expect(2) = 3e-16
 Identities = 38/51 (74%), Positives = 45/51 (87%)
 Frame = +3

Query: 77  DKVDSALKDMAVVMKQLDRAEEAIEAIKSFRGLCNKHSQESLDNVLLDLYK 127
           D+VDSALKDMA+VMKQ +R+EEAIEAIKS R  C+  +QESLDN+LLDLYK
Sbjct: 36  DRVDSALKDMAIVMKQQNRSEEAIEAIKSLRSRCSDQAQESLDNILLDLYK 188



 Score = 77.8 bits (190), Expect = 2e-15
 Identities = 37/63 (58%), Positives = 50/63 (78%)
 Frame = +2

Query: 117 SLDNVLLDLYKKCGRVEEQIELLKRKLRLIYQGEAFNGRTTKTARSHGKKFQVSIKQETA 176
           ++D + + L ++CGR+++QI LL+ KL LI QG AFNG+ TKTARS GKKFQVS++QE  
Sbjct: 254 NVDKIEVFLLQRCGRLDDQIALLRHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEAT 433

Query: 177 RLL 179
           RLL
Sbjct: 434 RLL 442



 Score = 21.9 bits (45), Expect(2) = 3e-16
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +1

Query: 65 AIVYFWKAINAG 76
          AI  FW AINAG
Sbjct: 1  AIPLFWAAINAG 36


>TC12055 homologue to UP|Q8L3R8 (Q8L3R8) AT3g08530/T8G24_1, partial (22%)
          Length = 483

 Score = 31.6 bits (70), Expect = 0.18
 Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
 Frame = +1

Query: 51  KAKHAQLVDKDPEVAIVYFWKAINAGDKVDSALKDMAVVMKQLDRAEEAIEAIKSFRGL- 109
           KA H +LV K   VA+       N    V+ AL ++ V  +  DR  E+I+   +F  + 
Sbjct: 49  KAGHLRLV-KPYMVAV-----QSNNVSAVNEALNEIYVEEEDYDRLRESIDLHDNFDQIG 210

Query: 110 ----CNKHSQESLDNVLLDLYKKCGRVEEQIELLKR 141
                 KH    +  V   +YKK GR ++ I L K+
Sbjct: 211 LAQKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKK 318


>TC17407 
          Length = 517

 Score = 29.3 bits (64), Expect = 0.90
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -1

Query: 24  LKKSSKGKKEDLYHVIHKVPYGDTPYVKAKHAQLVDKDPEVAIVYFW 70
           LKKS K KK    H+ H +      YVK     ++ K+ ++A +  W
Sbjct: 406 LKKSKKKKKIIRRHISHTMDMNGRNYVKKHLVYIIAKNEKMASMAIW 266


>BP036426 
          Length = 558

 Score = 28.5 bits (62), Expect = 1.5
 Identities = 19/73 (26%), Positives = 34/73 (46%)
 Frame = -1

Query: 133 EEQIELLKRKLRLIYQGEAFNGRTTKTARSHGKKFQVSIKQETARLLGNLGWAYMQKTNY 192
           EE+   L+R LR             + +R H +  +   K ETA ++ ++GW  M+K   
Sbjct: 222 EEEDNFLRRDLR------------DRRSRGHRRGIERGSKGETAAVVSSMGWDGMEKVVE 79

Query: 193 MMAEVVFKKAQMI 205
           ++  VV   A ++
Sbjct: 78  VIIGVVVVVAVVV 40


>TC16155 
          Length = 703

 Score = 27.7 bits (60), Expect = 2.6
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
 Frame = +1

Query: 100 IEAIKSFRGLC-NKHSQESLDNVLLD---------LYKK-CGRVEEQIELLKRKLRLIYQ 148
           ++ IK  R L  N +  +    V+LD         L+K  CG++  Q+ + + KLR ++ 
Sbjct: 166 LQVIKIIRKLVLNNYRHQLYQVVILDATHSFRV*ILHKS*CGKISLQVSIQEFKLRWVWM 345

Query: 149 GEAFNGRTTKT 159
            + FNG  T++
Sbjct: 346 IQLFNGCGTES 378


>TC9100 similar to UP|Q8W544 (Q8W544) NADH-ubiquinone oxidoreductase
           (Fragment), partial (97%)
          Length = 712

 Score = 26.6 bits (57), Expect = 5.8
 Identities = 17/46 (36%), Positives = 26/46 (55%)
 Frame = +1

Query: 101 EAIKSFRGLCNKHSQESLDNVLLDLYKKCGRVEEQIELLKRKLRLI 146
           +A++SF     K  QE  D   ++    CG+VEE IE  + +L+LI
Sbjct: 193 KAVESFTRHRLKACQEEEDWEAIENRLGCGQVEELIEEAQDELKLI 330


>TC11107 
          Length = 841

 Score = 26.2 bits (56), Expect = 7.6
 Identities = 14/38 (36%), Positives = 20/38 (51%)
 Frame = -2

Query: 131 RVEEQIELLKRKLRLIYQGEAFNGRTTKTARSHGKKFQ 168
           R   Q+E L+ KL    QG   + + TK++ SH K  Q
Sbjct: 429 RTSHQVEKLQIKLSETQQGAYPHPKPTKSSHSHAKSQQ 316


>BP040791 
          Length = 450

 Score = 26.2 bits (56), Expect = 7.6
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -3

Query: 131 RVEEQIELLKRKLRLIYQGEAFNGRTTKTARSHGKKFQVSI 171
           R EE+++L  R +RL  +GE F     K   +  KK+  SI
Sbjct: 295 RPEEEVKLSPRTMRLEVEGERFEHCV*KLYVNRKKKYSGSI 173


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.135    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,387,868
Number of Sequences: 28460
Number of extensions: 46687
Number of successful extensions: 209
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of query: 312
length of database: 4,897,600
effective HSP length: 90
effective length of query: 222
effective length of database: 2,336,200
effective search space: 518636400
effective search space used: 518636400
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)