TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC129092.1 - phase: 0 
         (391 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP028776                                                               48  2e-06
TC13210 similar to UP|Q9M0V1 (Q9M0V1) D123-like protein, partial...    31  0.40
AV416432                                                               30  0.69
BP080633                                                               28  2.0
TC10479 similar to UP|Q8LF96 (Q8LF96) PRL1 protein, partial (20%)      28  2.0
TC20146 weakly similar to UP|Q940P5 (Q940P5) At2g20740/F5H14.29,...    27  4.5
TC8690 similar to UP|Q8RVX1 (Q8RVX1) Pectin methylesterase precu...    27  7.6
BP066423                                                               26  10.0

>BP028776 
          Length = 389

 Score = 48.1 bits (113), Expect = 2e-06
 Identities = 20/24 (83%), Positives = 24/24 (99%)
 Frame = -2

Query: 364 NAVDGLYFDENDEFAPVVEMLDDE 387
           +AVDG+YF++NDEFAPVVEMLDDE
Sbjct: 388 SAVDGIYFEDNDEFAPVVEMLDDE 317


>TC13210 similar to UP|Q9M0V1 (Q9M0V1) D123-like protein, partial (51%)
          Length = 577

 Score = 30.8 bits (68), Expect = 0.40
 Identities = 24/67 (35%), Positives = 33/67 (48%), Gaps = 7/67 (10%)
 Frame = +1

Query: 281 FTKF----IKVIYYQLKYGLQKDRKDNTGPLLLDDSWFSTDSF---LHHHCKEFFSLVLD 333
           F KF    IK I +QL     +   D+TGP LL  S  + D+F   +H+   E    VL+
Sbjct: 73  FPKFKSVSIKTIIHQLPESFIQYLLDDTGPFLLPQSVLNEDAFPNRIHNPVDEQDFQVLE 252

Query: 334 GSVIDGD 340
           GS  + D
Sbjct: 253 GSDDEAD 273


>AV416432 
          Length = 415

 Score = 30.0 bits (66), Expect = 0.69
 Identities = 14/42 (33%), Positives = 24/42 (56%)
 Frame = +2

Query: 85  WDQQEERLVKVSEEEDERYRLAVKNMEFDRQLGPYNLSHYED 126
           WD ++   +K   ++D+ +  A+K  E+D+ L    L HYED
Sbjct: 224 WDGRKSVAIKRINDKDKAHNEAIKYKEYDKGLNVVRL-HYED 346


>BP080633 
          Length = 380

 Score = 28.5 bits (62), Expect = 2.0
 Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
 Frame = -2

Query: 323 HCKE---FFSLVLDGSVIDGDLLKW 344
           HC+E   F +LVLD ++ D +LLKW
Sbjct: 193 HCRELKYFPNLVLDSALFDRNLLKW 119


>TC10479 similar to UP|Q8LF96 (Q8LF96) PRL1 protein, partial (20%)
          Length = 559

 Score = 28.5 bits (62), Expect = 2.0
 Identities = 12/28 (42%), Positives = 16/28 (56%), Gaps = 5/28 (17%)
 Frame = +1

Query: 312 SWFSTDSFLHHHC-----KEFFSLVLDG 334
           SWFS   + HH C     KEFF++  +G
Sbjct: 439 SWFSQQKYSHHFCLWFI*KEFFNICSNG 522


>TC20146 weakly similar to UP|Q940P5 (Q940P5) At2g20740/F5H14.29, partial
           (45%)
          Length = 417

 Score = 27.3 bits (59), Expect = 4.5
 Identities = 14/31 (45%), Positives = 18/31 (57%)
 Frame = -2

Query: 198 RVVKCKGISGQELTSLNLDKTQLLETLLVKD 228
           R++    I   ELTS N+D  QLL TL + D
Sbjct: 185 RIMASPAIPITELTSFNIDCMQLLSTLTIFD 93


>TC8690 similar to UP|Q8RVX1 (Q8RVX1) Pectin methylesterase precursor
           (Pectinesterase) , partial (59%)
          Length = 1082

 Score = 26.6 bits (57), Expect = 7.6
 Identities = 12/22 (54%), Positives = 17/22 (76%), Gaps = 1/22 (4%)
 Frame = +3

Query: 337 IDGDLLKW-TRKFKKLLESNLG 357
           +DGD   W TRK ++LLES++G
Sbjct: 723 LDGDFPSWVTRKDRRLLESSVG 788


>BP066423 
          Length = 453

 Score = 26.2 bits (56), Expect = 10.0
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 269 CTEAPFHTRTRLFTKFIKVIYYQLKYGLQKDRKDNT 304
           C  APFH  T +F   I  IY+ +   L   +  NT
Sbjct: 174 CINAPFHLITSIFFPPISAIYFDILVKLISLKLHNT 67


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.320    0.138    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,502,534
Number of Sequences: 28460
Number of extensions: 86155
Number of successful extensions: 367
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of query: 391
length of database: 4,897,600
effective HSP length: 92
effective length of query: 299
effective length of database: 2,279,280
effective search space: 681504720
effective search space used: 681504720
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)