TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC129091.6 - phase: 0 /pseudo
         (1077 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC7940 weakly similar to UP|Q41414 (Q41414) Epoxide hydrolase  ,...    31  1.2
TC11514 similar to UP|Q8LPE6 (Q8LPE6) Epoxide hydrolase  (Fragme...    31  1.2
TC7942 similar to UP|Q8LPE6 (Q8LPE6) Epoxide hydrolase  (Fragmen...    30  2.7
BP059717                                                               30  2.7
BP032429                                                               29  3.5
TC8884 similar to UP|O22600 (O22600) Glycine-rich protein, parti...    29  3.5
TC9149 similar to UP|Q8LSK7 (Q8LSK7) Auxin-regulated protein, pa...    29  4.5
BP035678                                                               29  4.5
AV775527                                                               28  5.9
AI967453                                                               28  5.9
AV407623                                                               28  5.9
TC18096 similar to UP|Q9SY59 (Q9SY59) F14N23.5, partial (5%)           28  7.7
NP566648 hypothetical protein [Lotus japonicus]                        28  7.7
NP840539 hypothetical protein [Lotus corniculatus var. japonicus]      28  7.7

>TC7940 weakly similar to UP|Q41414 (Q41414) Epoxide hydrolase  , partial
           (34%)
          Length = 665

 Score = 30.8 bits (68), Expect = 1.2
 Identities = 21/64 (32%), Positives = 31/64 (47%), Gaps = 7/64 (10%)
 Frame = -1

Query: 53  SAVAWCAKLNAIACATETCARIPRSSVNPPFWIPIHIVIPER-------PTENAVFNVVA 105
           SA +W  K    +C T T ++   S +NPP W  I+  IPE+       PT N    +V 
Sbjct: 302 SAASWLLKCATPSCTT-TSSKPGTSFLNPPLW--IYSFIPEKL*AMSTSPTMNFTGTLVM 132

Query: 106 DSPL 109
            +P+
Sbjct: 131 GTPV 120


>TC11514 similar to UP|Q8LPE6 (Q8LPE6) Epoxide hydrolase  (Fragment) ,
           partial (24%)
          Length = 458

 Score = 30.8 bits (68), Expect = 1.2
 Identities = 17/49 (34%), Positives = 26/49 (52%)
 Frame = -3

Query: 53  SAVAWCAKLNAIACATETCARIPRSSVNPPFWIPIHIVIPERPTENAVF 101
           SA +W  K    +C T T +++  S +NPP W  I  +I E P + + F
Sbjct: 186 SAASWLLKCATPSCTT-TSSKLGTSFLNPPLW--I*SLISEEPYDKSTF 49


>TC7942 similar to UP|Q8LPE6 (Q8LPE6) Epoxide hydrolase  (Fragment) ,
           partial (91%)
          Length = 1288

 Score = 29.6 bits (65), Expect = 2.7
 Identities = 19/62 (30%), Positives = 30/62 (47%), Gaps = 5/62 (8%)
 Frame = -1

Query: 53  SAVAWCAKLNAIACATETCARIPRSSVNPPFW----IPIHI-VIPERPTENAVFNVVADS 107
           SA +W  K    +C T T  ++  S +NPP W    IP+ + V+   P  N    +V  +
Sbjct: 922 SAASWLMKCATPSCTT-TSFKVGTSFLNPPLWI*SFIPVKLYVMSTSPRMNFTGTLVMPT 746

Query: 108 PL 109
           P+
Sbjct: 745 PV 740


>BP059717 
          Length = 438

 Score = 29.6 bits (65), Expect = 2.7
 Identities = 15/35 (42%), Positives = 21/35 (59%)
 Frame = +1

Query: 565 SQAATAGNVSNQNMVASPAQNSTTPETSQGSSAMI 599
           S + T G+ SN +  A P + ST+ ETS GSS  +
Sbjct: 325 SSSGT*GSFSNTSSPAPPKRPSTSAETSSGSSTCL 429


>BP032429 
          Length = 468

 Score = 29.3 bits (64), Expect = 3.5
 Identities = 14/46 (30%), Positives = 25/46 (53%)
 Frame = +1

Query: 565 SQAATAGNVSNQNMVASPAQNSTTPETSQGSSAMIYFLFFRINMFT 610
           ++AAT   + N+  +ASP  N  +P T    + M+    + IN++T
Sbjct: 49  AKAATYAQMKNKRRLASPLVNDPSPLTPNFKAIMVPTAIWEINIWT 186


>TC8884 similar to UP|O22600 (O22600) Glycine-rich protein, partial (46%)
          Length = 888

 Score = 29.3 bits (64), Expect = 3.5
 Identities = 23/99 (23%), Positives = 35/99 (35%), Gaps = 7/99 (7%)
 Frame = +3

Query: 144 GPANLVIDTNCWLREHEWRQDTAVVTKWLSGYRWLSSKSSAPANLKSIFEEKFISQQSQT 203
           GP  L +   CW    +W Q TA    W     W+  ++         + ++   Q    
Sbjct: 429 GPEELHVLWWCWRLFRDWEQWTAFWNSWGRSRWWI**RTR--------WRDRRYCQ---- 572

Query: 204 SGSVQLHWSQWPPTQNATLHKWFCTSK-------GLLAC 235
                 HW  W   +N   ++W C+S        G LAC
Sbjct: 573 ------HWRTWWRCRNRRWYRWRCSSSPLRYDQHGSLAC 671


>TC9149 similar to UP|Q8LSK7 (Q8LSK7) Auxin-regulated protein, partial
           (35%)
          Length = 602

 Score = 28.9 bits (63), Expect = 4.5
 Identities = 11/24 (45%), Positives = 12/24 (49%)
 Frame = -3

Query: 212 SQWPPTQNATLHKWFCTSKGLLAC 235
           S W PT N  L +WFC    L  C
Sbjct: 438 SNWWPTHNLCLGRWFCRVISLCCC 367


>BP035678 
          Length = 477

 Score = 28.9 bits (63), Expect = 4.5
 Identities = 14/24 (58%), Positives = 18/24 (74%), Gaps = 1/24 (4%)
 Frame = +3

Query: 804 FLQRLCQL-LFFCFFFKRSQLVLY 826
           FLQR+CQL LF CF  +  QLV++
Sbjct: 282 FLQRICQLVLFTCFL*RIRQLVIF 353


>AV775527 
          Length = 466

 Score = 28.5 bits (62), Expect = 5.9
 Identities = 19/63 (30%), Positives = 27/63 (42%)
 Frame = +1

Query: 740 ISGGSTQMNAWVQEAIAKISSTSDGVSNLTPTSPIGGPSSLMPISINTETFPGTPAVRLI 799
           +S G T++ AW+    +  S  S   SNL    P   PS   P+S  T T    P+   +
Sbjct: 40  VSLGITKIGAWLHSPSSSSSVPSSSSSNLPSLPPPPPPS---PVSTPTSTSSPMPSPSPV 210

Query: 800 GDC 802
             C
Sbjct: 211 PTC 219


>AI967453 
          Length = 456

 Score = 28.5 bits (62), Expect = 5.9
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +1

Query: 135 VTIWTQPSHGPANLVIDTNCWLREHEWRQDTAVVTKWLSGYRWLSS 180
           ++IW   +H    L +D N +  +H +  +  +VT     Y W  S
Sbjct: 310 LSIWNPSTHVHKPLPVDANAYEYDHMYPYEYGLVTSSKDDYSWFES 447


>AV407623 
          Length = 425

 Score = 28.5 bits (62), Expect = 5.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 198 SQQSQTSGSVQLHWSQWPPTQNATLH 223
           +QQ+Q   S  +  S W P+QN TLH
Sbjct: 74  AQQNQQLSSFNISLSPWLPSQNRTLH 151


>TC18096 similar to UP|Q9SY59 (Q9SY59) F14N23.5, partial (5%)
          Length = 870

 Score = 28.1 bits (61), Expect = 7.7
 Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 15/82 (18%)
 Frame = -1

Query: 759 SSTSDGVSNLTPTSPIGGPSSLMPISINTE--------TFPGTPAVRLIGD-------CH 803
           SST+ G S  +  SP   PSSL P + +T+         FP T A+ ++ D         
Sbjct: 597 SSTTSGTSAASELSPCCFPSSLEPPASDTDFETALLSFCFPETSALPVVTDELELDSWFK 418

Query: 804 FLQRLCQLLFFCFFFKRSQLVL 825
             QR  + +    FFK    +L
Sbjct: 417 TFQRFSEAVMGAAFFKTDGCIL 352


>NP566648 hypothetical protein [Lotus japonicus]
          Length = 1101

 Score = 28.1 bits (61), Expect = 7.7
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 11/53 (20%)
 Frame = -2

Query: 570 AGNVSNQNMVASPAQNSTTPETSQGSSA-----------MIYFLFFRINMFTE 611
           +G+V+  N+VASP  NST+ ++     +            +YFL F I +F E
Sbjct: 509 SGSVTASNLVASPTINSTSVKSPSEKES*VVSAIATPLFCLYFLAFSIAIFKE 351


>NP840539 hypothetical protein [Lotus corniculatus var. japonicus]
          Length = 3654

 Score = 28.1 bits (61), Expect = 7.7
 Identities = 15/43 (34%), Positives = 25/43 (57%), Gaps = 10/43 (23%)
 Frame = -2

Query: 570 AGNVSNQNMVASPAQNSTTPE----------TSQGSSAMIYFL 602
           +G+V+  N+VASP  NST+ +          TS G + +++FL
Sbjct: 677 SGSVTASNLVASPTINSTSVKSPSEKESVTGTSPGGNPLVFFL 549


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.340    0.148    0.510 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,878,833
Number of Sequences: 28460
Number of extensions: 355330
Number of successful extensions: 3331
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 3242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3315
length of query: 1077
length of database: 4,897,600
effective HSP length: 100
effective length of query: 977
effective length of database: 2,051,600
effective search space: 2004413200
effective search space used: 2004413200
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 60 (27.7 bits)