TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC129091.5 - phase: 0 /pseudo
         (980 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BI417655                                                               32  0.37
AU251602                                                               31  0.83
TC8544                                                                 31  1.1
TC14478 weakly similar to UP|Q94G86 (Q94G86) Beta-1,3-glucanase-...    31  1.1
BP053073                                                               30  2.4
TC10912                                                                30  2.4
CB828977                                                               28  5.4
BP069812                                                               28  5.4
TC17914 similar to UP|Q39833 (Q39833) ALFA-carboxyltransferase p...    28  9.2
TC16554 homologue to UP|AAN71719 (AAN71719) Glycogen synthase ki...    28  9.2

>BI417655 
          Length = 509

 Score = 32.3 bits (72), Expect = 0.37
 Identities = 18/46 (39%), Positives = 27/46 (58%)
 Frame = +3

Query: 279 RQVLQLQHLLAHPTGLVLPLYLPFCSVGKINLYHFTAQQFQIFQHM 324
           +Q+LQ+QHLL H       L L FC VG+   +HF + + +  QH+
Sbjct: 351 QQLLQMQHLLGHCI-----LVLMFCFVGQDLCHHFHSHKQRQQQHL 473


>AU251602 
          Length = 350

 Score = 31.2 bits (69), Expect = 0.83
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -2

Query: 275 NFLPRQVLQLQHLLAHPTGLVLPLYLPFCSVGKINLYHF 313
           NF P+  LQ  H+LA P  L    +L FC V K + Y +
Sbjct: 277 NFFPKLQLQFNHILAFPCQLA-SFFLFFCFVAKRSCYSY 164


>TC8544 
          Length = 1278

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = +2

Query: 2   NPMKESEAEAEAAATVNDPMMEEEEVEAGTVFDISLEQSPSTSLHK 47
           +P+KE+E  A AAA  +    E EEVE G  FD  +E     ++ K
Sbjct: 401 DPVKETEDSASAAAASS----ESEEVEVGVGFDSKVEGEEVKAIEK 526


>TC14478 weakly similar to UP|Q94G86 (Q94G86) Beta-1,3-glucanase-like
           protein, partial (83%)
          Length = 1784

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 19/68 (27%), Positives = 34/68 (49%), Gaps = 3/68 (4%)
 Frame = +1

Query: 651 LASHLITRLRHYA---KIFRTLANQAVTVASGSTSGGVPNLTLNPSISGPSSLMLISINT 707
           L S  I ++R Y    +I + LAN  + +  G+ +G +PNL  +P+ +      +  +N+
Sbjct: 208 LRSTSIGKIRLYGADPEIIKALANSGIGIIIGAANGDIPNLAADPNAA------VQWVNS 369

Query: 708 GTFPGTPA 715
              P  PA
Sbjct: 370 NVLPYYPA 393


>BP053073 
          Length = 456

 Score = 29.6 bits (65), Expect = 2.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 58  FSAVAWCAKLNVIACATETCVNGIPRSSVNPWFWI 92
           F  V W A L V  CAT+ CV+     S++   W+
Sbjct: 411 FXHVVWFAALMVQGCATDACVHRFSAGSLSCSAWV 307


>TC10912 
          Length = 781

 Score = 29.6 bits (65), Expect = 2.4
 Identities = 12/28 (42%), Positives = 15/28 (52%)
 Frame = +2

Query: 896 RPCTDSNDTPKPFRSNPLDSRSLESNDI 923
           RP   +   P PF  NP+DS +L   DI
Sbjct: 152 RPIKPNRSEPDPFAQNPVDSSTLSDQDI 235


>CB828977 
          Length = 528

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 16/41 (39%), Positives = 26/41 (63%)
 Frame = +2

Query: 664 KIFRTLANQAVTVASGSTSGGVPNLTLNPSISGPSSLMLIS 704
           K   T+A+++   ASG TS  +PN +L PS + P+S+  I+
Sbjct: 89  KTLSTVASRSTAQASGRTSSKIPN-SLLPSRAVPTSISRIN 208


>BP069812 
          Length = 433

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 384 DISIPATDDKSKGIHFNPFDLPKYL 408
           ++ +P +  K KG  F P+  PKYL
Sbjct: 71  NLKLPPSSSKKKGQSFKPYQTPKYL 145


>TC17914 similar to UP|Q39833 (Q39833) ALFA-carboxyltransferase precursor
           (Carboxyl transferase alpha subunit)  , partial (23%)
          Length = 530

 Score = 27.7 bits (60), Expect = 9.2
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 9/54 (16%)
 Frame = -3

Query: 775 GSKGGEEPSPGPVRLGNGNAGQGYS---------VEEVKVIFQVLLDLCRRTSG 819
           G KG    S  P  LG+G +GQGYS           E  ++F   LDL +   G
Sbjct: 288 GLKGDR*LSTPPFTLGSGLSGQGYSCFLTFLSLATTEKSLVFMANLDLPKVLKG 127


>TC16554 homologue to UP|AAN71719 (AAN71719) Glycogen synthase kinase 3 beta
           protein kinase DWARF12 , partial (71%)
          Length = 927

 Score = 27.7 bits (60), Expect = 9.2
 Identities = 23/68 (33%), Positives = 27/68 (38%), Gaps = 10/68 (14%)
 Frame = +1

Query: 723 HFLHRLC-QLLFFCFFFKRSQL-------ARYKSGLRRTAE--TSLVRSNDGQTGRDRQI 772
           HFLH     +LFF FFF    L           S +    E  TS++  ND  TG     
Sbjct: 16  HFLHIFSFSILFFFFFFTLP*LLPLLLLSLSLSSSMAEDKEMSTSVINGNDSLTGHIIST 195

Query: 773 VPGSKGGE 780
             G K GE
Sbjct: 196 TIGGKNGE 219


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.327    0.141    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,590,889
Number of Sequences: 28460
Number of extensions: 286287
Number of successful extensions: 2038
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2038
length of query: 980
length of database: 4,897,600
effective HSP length: 99
effective length of query: 881
effective length of database: 2,080,060
effective search space: 1832532860
effective search space used: 1832532860
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.7 bits)