TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC128660.9 + phase: 0 /pseudo
         (58 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC14425 similar to PIR|T50796|T50796 chorismate mutase CM2 - Ara...    75  3e-15
TC12925 similar to PIR|S38958|S38958 chorismate mutase  precurso...    40  7e-05
TC17487 UP|CAE45597 (CAE45597) SAR DNA-binding protein-like prot...    26  1.8
TC18465                                                                25  4.0
TC17186 homologue to UP|AAD03372 (AAD03372) Expressed protein, p...    24  5.2
BP046353                                                               24  6.8
TC13604                                                                24  6.8

>TC14425 similar to PIR|T50796|T50796 chorismate mutase CM2 - Arabidopsis
           thaliana {Arabidopsis thaliana;} , partial (58%)
          Length = 1144

 Score = 75.1 bits (183), Expect = 3e-15
 Identities = 32/58 (55%), Positives = 49/58 (84%)
 Frame = +2

Query: 1   MKLLTFKSVEEMVKKRLKKKTTLFRQDINFDNNDDNKGKQKFDPSMASTFYEKWVIPL 58
           MKLLTF+SV+EMV KR++KK  +F Q++  +++D+ + K+KFDPS+AS+ Y+KW+IPL
Sbjct: 674 MKLLTFESVQEMVIKRVEKKAMVFGQEVGLNSDDEKEVKRKFDPSVASSLYQKWIIPL 847


>TC12925 similar to PIR|S38958|S38958 chorismate mutase  precursor -
           Arabidopsis                thaliana {Arabidopsis
           thaliana;} , partial (28%)
          Length = 381

 Score = 40.4 bits (93), Expect = 7e-05
 Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
 Frame = +1

Query: 1   MKLLTFKSVEEMVKKRLKKKTTLFRQDINFDNNDD-NKGKQKFDPSMASTFYEKWVIPL 58
           M LLT+  VEE +K+R++ K   + Q++  +  +   +   K +PS+ +  Y  W++PL
Sbjct: 94  MDLLTYPEVEEAIKRRVEMKAKTYGQEVVVNMKEHRTEPVYKINPSLVADLYSDWIMPL 270


>TC17487 UP|CAE45597 (CAE45597) SAR DNA-binding protein-like protein, complete
          Length = 1794

 Score = 25.8 bits (55), Expect = 1.8
 Identities = 12/32 (37%), Positives = 18/32 (55%)
 Frame = +1

Query: 10   EEMVKKRLKKKTTLFRQDINFDNNDDNKGKQK 41
            +E+VKK  KKK     +++   N DD   K+K
Sbjct: 1615 KEVVKKEKKKKRKESTENVELQNGDDAGEKKK 1710


>TC18465 
          Length = 613

 Score = 24.6 bits (52), Expect = 4.0
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 29  NFDNNDDNKGKQKFDPSM 46
           NF  NDDNKG     P +
Sbjct: 193 NFTRNDDNKGAASISPQV 246


>TC17186 homologue to UP|AAD03372 (AAD03372) Expressed protein, partial (7%)
          Length = 595

 Score = 24.3 bits (51), Expect = 5.2
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 11  EMVKKRLKKKTTLFRQDINFDNNDDNK 37
           EM+   + +K TL R+ +N+   D+N+
Sbjct: 513 EMIYSSIPRKGTLIREHMNYIQADNNR 433


>BP046353 
          Length = 548

 Score = 23.9 bits (50), Expect = 6.8
 Identities = 11/27 (40%), Positives = 16/27 (58%)
 Frame = -2

Query: 11  EMVKKRLKKKTTLFRQDINFDNNDDNK 37
           E VK+   KKT L   +  FD++ DN+
Sbjct: 496 ETVKRLCPKKTLLVGMNHEFDHHKDNE 416


>TC13604 
          Length = 520

 Score = 23.9 bits (50), Expect = 6.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 1   MKLLTFKSVEEMVKKRLKKKTTLFRQDINFDNNDD 35
           MKL  +   EE ++    K  TLF  D  +  +DD
Sbjct: 162 MKLKFYTEEEEDIRNEKMKFDTLFEDDTLYYKDDD 266


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.133    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 821,166
Number of Sequences: 28460
Number of extensions: 6278
Number of successful extensions: 33
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of query: 58
length of database: 4,897,600
effective HSP length: 34
effective length of query: 24
effective length of database: 3,929,960
effective search space: 94319040
effective search space used: 94319040
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)