BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC127429.4 + phase: 0
(301 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC8082 similar to UP|Q8H9E8 (Q8H9E8) Resistant specific protein-... 217 2e-57
TC17232 weakly similar to UP|Q8H9E9 (Q8H9E9) Resistant specific ... 208 1e-54
TC19645 similar to UP|Q94IC5 (Q94IC5) BURP domain-containing pro... 143 1e-44
TC10107 similar to UP|Q9MB24 (Q9MB24) S1-3 protein (Fragment), p... 156 4e-39
TC14280 weakly similar to UP|Q94IC5 (Q94IC5) BURP domain-contain... 149 7e-37
AV779646 142 9e-35
TC16074 similar to UP|Q8H9E8 (Q8H9E8) Resistant specific protein... 109 6e-25
BP045414 109 6e-25
TC16694 similar to UP|Q8H9E9 (Q8H9E9) Resistant specific protein... 77 2e-20
TC17468 weakly similar to UP|Q8H9E9 (Q8H9E9) Resistant specific ... 94 2e-20
AV780764 82 8e-17
TC9286 similar to UP|O65009 (O65009) BURP domain containing prot... 76 8e-15
BE122612 70 3e-13
AV770881 51 4e-13
TC13199 similar to UP|Q94IC5 (Q94IC5) BURP domain-containing pro... 66 8e-12
BP042359 60 5e-10
TC19611 57 3e-09
AV769292 47 4e-06
TC12015 weakly similar to UP|O65009 (O65009) BURP domain contain... 47 4e-06
AV771878 42 1e-04
>TC8082 similar to UP|Q8H9E8 (Q8H9E8) Resistant specific protein-3, partial
(54%)
Length = 1913
Score = 217 bits (553), Expect = 2e-57
Identities = 107/231 (46%), Positives = 145/231 (62%), Gaps = 1/231 (0%)
Frame = +1
Query: 72 YEND-ANEAELHDNRNLAMFLLEKDLHHGTKFNIQFTKTSDHGPTFLPGDVANSIPFSSN 130
+EN A++ LH+ F E LH KF + K P LP + IPFS +
Sbjct: 940 HENSGASDHHLHEISARVGFFQEDQLHSDNKFYMHLNKIRSSIP-LLPRQITQQIPFSLD 1116
Query: 131 KLENILNYFSIKQGSTESEIVKNTISECEAYGIKGEEKLCVTSLESMIDFTTLKLGNNVD 190
K++ +L S+K S +EI++ TIS CEA + GEEK C TSLESM+DF T KLG NV
Sbjct: 1117 KMKEVLEMLSVKPNSKNAEIMEKTISGCEAPAMDGEEKYCATSLESMMDFVTSKLGKNVH 1296
Query: 191 TVSTEVNGESGLQQYVIANGVKKMGENNLVVCHKRNYPYAVFYCHKTDATKVYSVPLEGA 250
+ST+V E+ LQ ++ +GVKK+ +++++ CH YPY VF CH+ T Y VPLEG
Sbjct: 1297 AMSTDVQKETKLQNLLVKDGVKKLADDHVIACHPLAYPYVVFGCHELQKTSAYFVPLEGE 1476
Query: 251 DGSRVKAVAICHSDTSQWSLKHLAFQVLKVQQGTFPVCHILQQGQVVWFSK 301
DG RVKAVA+CH DTS+W ++AF+VLKV+ GT PVCH +G ++W SK
Sbjct: 1477 DGVRVKAVAVCHKDTSKWDPNYVAFRVLKVKPGTVPVCHFFPEGHLLWLSK 1629
Score = 48.5 bits (114), Expect = 1e-06
Identities = 20/44 (45%), Positives = 31/44 (70%)
Frame = +1
Query: 8 LALVATHATLPPELYWKSKLPTTQIPKAITDILHPMDDGKISVD 51
+ L+ THA LPPE+YWK LP+T +PKA+ ++L G +S++
Sbjct: 70 MMLMTTHAALPPEIYWKMMLPSTPMPKAVIELLR----GDVSIE 189
>TC17232 weakly similar to UP|Q8H9E9 (Q8H9E9) Resistant specific protein-2,
partial (33%)
Length = 966
Score = 208 bits (529), Expect = 1e-54
Identities = 105/249 (42%), Positives = 153/249 (61%), Gaps = 3/249 (1%)
Frame = +3
Query: 56 VNGKTRIVYDAAPIYFYENDANEAEL-HDNRNLAMFLLEKDLHHGTKFNIQFTKTSDHGP 114
+ K ++D +Y Y++ A+ +L H+ +F E++LH GTK ++Q +K P
Sbjct: 30 IGAKEIQLHDDTNLYGYKSGASLHKLLHEKTKAGVFFFEENLHPGTKLDLQLSKRKPAVP 209
Query: 115 TFLPGDVANSIPFSSNKLENILNYFSIKQGSTESEIVKNTISECEAYGIKGEEKLCVTSL 174
LP +A+ IPFS KL+ IL +K S +EIV+ T+ CE ++GEE++C TSL
Sbjct: 210 -ILPRKIADQIPFSLEKLKEILEILVVKPDSKNTEIVEKTMGGCELPSMEGEEQMCATSL 386
Query: 175 ESMIDFTTLKLGNNVDTVSTEVN--GESGLQQYVIANGVKKMGENNLVVCHKRNYPYAVF 232
ES++DF KLG NV +STEV E+ Q ++ +GVKK+ ++ + VCH YPY V
Sbjct: 387 ESLVDFIASKLGKNVLAISTEVELEKETQSQNLLVKDGVKKLADDGMAVCHPMTYPYPVC 566
Query: 233 YCHKTDATKVYSVPLEGADGSRVKAVAICHSDTSQWSLKHLAFQVLKVQQGTFPVCHILQ 292
+ HK T Y VPLEG DG+RVKAVA+CH DTS+W H++F L V+ GT PVCH+L
Sbjct: 567 FSHKLVKTSAYFVPLEGEDGARVKAVAVCHRDTSKWDPNHVSFPDLNVKPGTVPVCHVLP 746
Query: 293 QGQVVWFSK 301
+ ++W K
Sbjct: 747 ERHLLWVPK 773
>TC19645 similar to UP|Q94IC5 (Q94IC5) BURP domain-containing protein
(Fragment), partial (38%)
Length = 619
Score = 143 bits (360), Expect(3) = 1e-44
Identities = 73/110 (66%), Positives = 87/110 (78%), Gaps = 2/110 (1%)
Frame = +3
Query: 100 TKFNIQFTKTSDHGPT--FLPGDVANSIPFSSNKLENILNYFSIKQGSTESEIVKNTISE 157
TK N+QFTKTS+ FLP VA+SIPFSSNK++++LN FS+K GS E+EIVKNTI+E
Sbjct: 120 TKLNLQFTKTSNDAAATFFLPRQVADSIPFSSNKVDDVLNKFSLKPGSEEAEIVKNTIAE 299
Query: 158 CEAYGIKGEEKLCVTSLESMIDFTTLKLGNNVDTVSTEVNGESGLQQYVI 207
CE G+ GEEK CVTSLESM+DFTT KLG NV+ VST+VN E LQQY I
Sbjct: 300 CEEPGVVGEEKRCVTSLESMVDFTTSKLGKNVEAVSTDVNKEKELQQYTI 449
Score = 42.0 bits (97), Expect(3) = 1e-44
Identities = 17/33 (51%), Positives = 23/33 (69%)
Frame = +2
Query: 72 YENDANEAELHDNRNLAMFLLEKDLHHGTKFNI 104
Y A+E +LH+N N+A+F LEKDLH G K +
Sbjct: 35 YNYAASETQLHENPNVALFFLEKDLHQGNKIEL 133
Score = 31.6 bits (70), Expect(3) = 1e-44
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2
Query: 219 LVVCHKRNYPYAVFYCHK 236
L++ HK NYPYAVF C K
Sbjct: 485 LLLFHKENYPYAVFXCXK 538
>TC10107 similar to UP|Q9MB24 (Q9MB24) S1-3 protein (Fragment), partial
(65%)
Length = 575
Score = 156 bits (395), Expect = 4e-39
Identities = 74/111 (66%), Positives = 89/111 (79%), Gaps = 1/111 (0%)
Frame = +2
Query: 192 VSTEVNGESGLQQYVIANGVKKM-GENNLVVCHKRNYPYAVFYCHKTDATKVYSVPLEGA 250
VST V+ E+ Q+Y IA GVKK+ + VVCHK+NYPYAVFYCHK+D+T+ YSVPLEG
Sbjct: 5 VSTVVDKETEKQRYTIATGVKKLEAGDKAVVCHKQNYPYAVFYCHKSDSTRAYSVPLEGD 184
Query: 251 DGSRVKAVAICHSDTSQWSLKHLAFQVLKVQQGTFPVCHILQQGQVVWFSK 301
+G RVKAVA+CH+DTSQW+ KHLAFQVLKV+ GT PVCH L + VVW SK
Sbjct: 185 NGVRVKAVAVCHTDTSQWNPKHLAFQVLKVKPGTVPVCHFLPEDHVVWVSK 337
>TC14280 weakly similar to UP|Q94IC5 (Q94IC5) BURP domain-containing protein
(Fragment), partial (54%)
Length = 723
Score = 149 bits (375), Expect = 7e-37
Identities = 96/227 (42%), Positives = 125/227 (54%), Gaps = 59/227 (25%)
Frame = +2
Query: 5 VLQLALVAT-HATLPPELYWKSKLPTTQIPKAITDILHP-----------MDDGKISVD- 51
+L + LVAT HA LPPELYWKS LPTT +PKAITDIL+P + G ++VD
Sbjct: 44 LLSVLLVATSHAALPPELYWKSVLPTTPMPKAITDILYPHWVEDKSTNVGVRKGGVNVDA 223
Query: 52 --------------GKISVN---------GKTRIV--------------YDAAPIYF--- 71
G ++VN G T + + P++
Sbjct: 224 GKGKPGHTKVDVGKGGVNVNAGKGSGGGHGGTNVNVGGGKGGGVSVHTGHKGKPVFVNVG 403
Query: 72 ------YENDANEAELHDNRNLAMFLLEKDLHHGTKFNIQFTKTSDHGPTFLPGDVANSI 125
Y A E +LH + N+A+F LEK+LH GTK N+ FTKTS+ TFLP VA+SI
Sbjct: 404 SKSPFDYVYAATETQLHSDPNVALFFLEKNLHPGTKMNLHFTKTSNKA-TFLPRIVADSI 580
Query: 126 PFSSNKLENILNYFSIKQGSTESEIVKNTISECEAYGIKGEEKLCVT 172
PFSS K+E LN +S+K GS E++++KNTI ECE GI+GEEK C T
Sbjct: 581 PFSSEKVELALNKYSVKAGSEEAQVMKNTIDECEQKGIQGEEKYCAT 721
>AV779646
Length = 510
Score = 142 bits (357), Expect = 9e-35
Identities = 64/119 (53%), Positives = 82/119 (68%)
Frame = -3
Query: 180 FTTLKLGNNVDTVSTEVNGESGLQQYVIANGVKKMGENNLVVCHKRNYPYAVFYCHKTDA 239
F T KLGN+V +STEV E+ L ++ +GV+K+ ++ + VCH YPY VF+CHK
Sbjct: 508 FITSKLGNDVHAMSTEVTKETKLLYLLVKDGVEKLADDYITVCHPMAYPYVVFWCHKLQK 329
Query: 240 TKVYSVPLEGADGSRVKAVAICHSDTSQWSLKHLAFQVLKVQQGTFPVCHILQQGQVVW 298
T Y VPLEG DG RVKAVA+CH DTS+W H AFQ LKV+ GT PVCH L +G ++W
Sbjct: 328 TDAYFVPLEGEDGVRVKAVAVCHKDTSKWDPNHAAFQDLKVKPGTVPVCHFLPEGHLLW 152
>TC16074 similar to UP|Q8H9E8 (Q8H9E8) Resistant specific protein-3, partial
(6%)
Length = 844
Score = 109 bits (272), Expect = 6e-25
Identities = 64/159 (40%), Positives = 90/159 (56%), Gaps = 5/159 (3%)
Frame = +2
Query: 82 HDNRNLAMFLLEKDLHHGTKFNIQFT-KTSDHGPTFLPGDVANSIPFSSNKLENILNYFS 140
H + L +F + KDL G K I F+ K S P FLP + AN IPFSS +L ++LN+FS
Sbjct: 353 HMDPELHVFFIPKDLKVGKKMPIYFSMKDSSTSPKFLPREEANQIPFSSKQLPSLLNFFS 532
Query: 141 IKQGSTESEIVKNTISECEAYGIKGEEKLCVTSLESMIDFTTLKLGNN----VDTVSTEV 196
I + S +++ +K T+ +CE ++GE K C TSLES++D G + V T +
Sbjct: 533 IPKNSPQAKAMKYTLEQCEFEPMEGETKFCATSLESLLDSARHLFGLSPQFKVLTTTHLT 712
Query: 197 NGESGLQQYVIANGVKKMGENNLVVCHKRNYPYAVFYCH 235
LQ Y I VK+ N++ CH YP+AVFYCH
Sbjct: 713 KSHVLLQNYTILE-VKENRVPNVIGCHPMPYPFAVFYCH 826
>BP045414
Length = 478
Score = 109 bits (272), Expect = 6e-25
Identities = 47/90 (52%), Positives = 62/90 (68%)
Frame = -2
Query: 209 NGVKKMGENNLVVCHKRNYPYAVFYCHKTDATKVYSVPLEGADGSRVKAVAICHSDTSQW 268
+GVKK+ ++ + VCH YPYAVF+CHK T Y VPLEG DG+RV VA+C DTS+W
Sbjct: 474 DGVKKLPDDGIAVCHPLTYPYAVFFCHKLVKTSAYFVPLEGEDGARV*PVAVCPRDTSKW 295
Query: 269 SLKHLAFQVLKVQQGTFPVCHILQQGQVVW 298
H++F L VQ GT PVCH+L + ++W
Sbjct: 294 DPNHVSFPDLHVQPGTVPVCHVLPERHLLW 205
>TC16694 similar to UP|Q8H9E9 (Q8H9E9) Resistant specific protein-2, partial
(12%)
Length = 488
Score = 76.6 bits (187), Expect(2) = 2e-20
Identities = 33/56 (58%), Positives = 39/56 (68%)
Frame = +1
Query: 243 YSVPLEGADGSRVKAVAICHSDTSQWSLKHLAFQVLKVQQGTFPVCHILQQGQVVW 298
Y VPLEG DG RV VA+CH DTS+W H AF LKV+ GT PVCH L +G ++W
Sbjct: 106 YFVPLEGEDGVRVNHVAVCHQDTSKWDPNHAAFPDLKVKPGTVPVCHFLPEGHLLW 273
Score = 38.5 bits (88), Expect(2) = 2e-20
Identities = 13/27 (48%), Positives = 20/27 (73%)
Frame = +3
Query: 209 NGVKKMGENNLVVCHKRNYPYAVFYCH 235
+GV+K+ ++ + VCH YPY VF+CH
Sbjct: 3 DGVEKLADDYITVCHPMAYPYLVFWCH 83
>TC17468 weakly similar to UP|Q8H9E9 (Q8H9E9) Resistant specific protein-2,
partial (11%)
Length = 652
Score = 94.4 bits (233), Expect = 2e-20
Identities = 40/100 (40%), Positives = 58/100 (58%), Gaps = 1/100 (1%)
Frame = +3
Query: 203 QQYVIANGVKKMGENNLVVCHKRNYPYAVFYCHKTDA-TKVYSVPLEGADGSRVKAVAIC 261
Q Y I + ++ +V CH YPYAVFYCH ++ +VY V L G +G +V+A+ +C
Sbjct: 3 QNYTILENIMRISAPKMVACHTMPYPYAVFYCHSQESENRVYKVSLVGDNGDKVEAMVVC 182
Query: 262 HSDTSQWSLKHLAFQVLKVQQGTFPVCHILQQGQVVWFSK 301
H DTS W H++FQ+L V G+ VCH ++W K
Sbjct: 183 HLDTSHWGSGHVSFQILGVTPGSSSVCHFFPADNLIWAPK 302
>AV780764
Length = 438
Score = 82.4 bits (202), Expect = 8e-17
Identities = 36/71 (50%), Positives = 45/71 (62%)
Frame = -1
Query: 228 PYAVFYCHKTDATKVYSVPLEGADGSRVKAVAICHSDTSQWSLKHLAFQVLKVQQGTFPV 287
PY VF+ H + Y VPLEG DG RVK +A+CH TS+W H A LKV+ GT PV
Sbjct: 378 PYVVFWFH*LPKPQAYFVPLEGEDGVRVKTIAVCHQHTSKWDPNHAALPNLKVKPGTGPV 199
Query: 288 CHILQQGQVVW 298
CH L +G ++W
Sbjct: 198 CHFLLEGHLLW 166
>TC9286 similar to UP|O65009 (O65009) BURP domain containing protein,
partial (6%)
Length = 805
Score = 75.9 bits (185), Expect = 8e-15
Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 5/168 (2%)
Frame = +1
Query: 45 DGKISVDGKISVNGKTRIVYDAAPIYFYENDANEAELHDNRNLAMFLLEKDLHHGTKFNI 104
DG D K+S G +E + + + F L+ DL+ G +
Sbjct: 352 DGTQKTDPKVSTQG-------------HEEKSKNVDHTEAFKTGFFALD-DLYAGNVMTL 489
Query: 105 QF-TKTSDHGPTFLPGDVANSIPFSSNKLENILNYFSIKQGSTESEIVKNTISECEAYGI 163
QF + H FL N IPFSS++L ++L FSI + S +++ ++ T+ +CE I
Sbjct: 490 QFPVQEISH---FLSRKETNYIPFSSSQLPSVLQLFSIPEDSPKAKSMRGTLGQCEGEPI 660
Query: 164 KGEEKLCVTSLESMIDFTTLKLGNNV--DTVSTEVNGESG--LQQYVI 207
GE K+C TSLESM++F +G+N D ++T SG LQ+Y I
Sbjct: 661 TGERKICATSLESMLEFVDSVIGSNTEGDLLTTSHPSPSGSPLQKYTI 804
>BE122612
Length = 386
Score = 70.5 bits (171), Expect = 3e-13
Identities = 39/105 (37%), Positives = 56/105 (53%), Gaps = 1/105 (0%)
Frame = +2
Query: 144 GSTESEIVKNTISECEAYGIKGEEKLCVTSLESMIDFTTLKLGNNVDTVSTE-VNGESGL 202
GS E +++++++ ECE +GE K CV S+E M+DF T LG NV +TE VNG +
Sbjct: 23 GSME-KMMRDSLQECERVPSRGETKRCVGSIEDMVDFATSVLGRNVVVRTTENVNGSNKK 199
Query: 203 QQYVIANGVKKMGENNLVVCHKRNYPYAVFYCHKTDATKVYSVPL 247
GV V CH+ +PY ++YCH +VY L
Sbjct: 200 VMVGRVQGVNGGKVTRSVSCHQSLFPYLLYYCHSLPKVRVYQADL 334
>AV770881
Length = 403
Score = 50.8 bits (120), Expect(3) = 4e-13
Identities = 21/47 (44%), Positives = 29/47 (61%)
Frame = -3
Query: 252 GSRVKAVAICHSDTSQWSLKHLAFQVLKVQQGTFPVCHILQQGQVVW 298
G +K + +CH DTS+W H AF LKV+ GT PV L +G ++W
Sbjct: 311 GLGLKPLLVCHQDTSKWDPNHAAFPDLKVKPGTVPVSQFLPEGPLLW 171
Score = 30.0 bits (66), Expect(3) = 4e-13
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = -2
Query: 243 YSVPLEGADGSRVKAVA 259
Y VPLEG DG RVKAVA
Sbjct: 339 YFVPLEGEDGVRVKAVA 289
Score = 28.9 bits (63), Expect(3) = 4e-13
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 222 CHKRNYPYAVFYCH 235
CH YPY VF+CH
Sbjct: 403 CHPMAYPYGVFWCH 362
>TC13199 similar to UP|Q94IC5 (Q94IC5) BURP domain-containing protein
(Fragment), partial (19%)
Length = 426
Score = 65.9 bits (159), Expect = 8e-12
Identities = 40/66 (60%), Positives = 47/66 (70%), Gaps = 6/66 (9%)
Frame = +2
Query: 2 INVVLQLALVATHATLPPELYWKSKLPTTQIPKAITDILHP--MDDGKISVD-GKISVN- 57
I ++L LALVAT A+L PELYWKSKLPTT +PKAITD+LH +D SV GK VN
Sbjct: 74 IFMLLNLALVATQASLTPELYWKSKLPTTPMPKAITDLLHSDWTEDKSTSVAVGKGGVNV 253
Query: 58 --GKTR 61
GKT+
Sbjct: 254 DAGKTK 271
>BP042359
Length = 404
Score = 60.1 bits (144), Expect = 5e-10
Identities = 29/75 (38%), Positives = 39/75 (51%), Gaps = 3/75 (4%)
Frame = -3
Query: 227 YPYAVFYCHKTDATKVYSVPLEGADGSRVK---AVAICHSDTSQWSLKHLAFQVLKVQQG 283
YPY ++YCH +VY + D +++K VAICH DTS W +H AF L G
Sbjct: 402 YPYLLYYCHSVPQVRVYEAEILDVD-TKLKINHGVAICHLDTSAWGPEHGAFVALGAGPG 226
Query: 284 TFPVCHILQQGQVVW 298
VCH + Q + W
Sbjct: 225 KIEVCHWIFQNDMTW 181
>TC19611
Length = 533
Score = 57.4 bits (137), Expect = 3e-09
Identities = 29/71 (40%), Positives = 42/71 (58%)
Frame = -3
Query: 90 FLLEKDLHHGTKFNIQFTKTSDHGPTFLPGDVANSIPFSSNKLENILNYFSIKQGSTESE 149
F E LH G KFN+ K P +LP ++A+ IPFS +K+ IL S+K S +E
Sbjct: 216 FFEEYQLHAGNKFNVNLNKIKSVVP-WLPREIADHIPFSLDKMNEILEMLSVKLESKNAE 40
Query: 150 IVKNTISECEA 160
+V+ TI +CE+
Sbjct: 39 MVEKTIGDCES 7
Score = 37.4 bits (85), Expect = 0.003
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = -2
Query: 10 LVATHATLPPELYWKSKLPTTQIPKAITDI 39
++ LP EL WK KLP T +PKAIT++
Sbjct: 466 VMTAQGALPAELDWKRKLPATPVPKAITEL 377
>AV769292
Length = 250
Score = 47.0 bits (110), Expect = 4e-06
Identities = 20/28 (71%), Positives = 23/28 (81%)
Frame = -3
Query: 267 QWSLKHLAFQVLKVQQGTFPVCHILQQG 294
+W+LKHLAFQVLKV+ GT VCH L QG
Sbjct: 248 KWNLKHLAFQVLKVKPGTVSVCHFLPQG 165
>TC12015 weakly similar to UP|O65009 (O65009) BURP domain containing
protein, partial (12%)
Length = 464
Score = 47.0 bits (110), Expect = 4e-06
Identities = 17/45 (37%), Positives = 27/45 (59%)
Frame = +1
Query: 257 AVAICHSDTSQWSLKHLAFQVLKVQQGTFPVCHILQQGQVVWFSK 301
A+ +CH DTS W+ H+ F+ L ++ G PVCH ++W +K
Sbjct: 1 ALGVCHLDTSDWTPSHIIFKQLGIEAGKAPVCHFFPIKHLMWVAK 135
>AV771878
Length = 560
Score = 42.4 bits (98), Expect = 1e-04
Identities = 18/35 (51%), Positives = 25/35 (71%)
Frame = +2
Query: 6 LQLALVATHATLPPELYWKSKLPTTQIPKAITDIL 40
L + ++ +A LPP+L WK LPTT +PKAIT+ L
Sbjct: 50 LSMMVMLAYAALPPQLDWKMMLPTTPVPKAITEQL 154
Score = 29.6 bits (65), Expect = 0.65
Identities = 15/42 (35%), Positives = 24/42 (56%)
Frame = +1
Query: 84 NRNLAMFLLEKDLHHGTKFNIQFTKTSDHGPTFLPGDVANSI 125
N++ F E++LH GTK ++Q +K P LP +A+ I
Sbjct: 436 NKSRCYFSFEENLHPGTKLDLQLSKRKPAVP-ILPRTIADQI 558
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.317 0.134 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,070,909
Number of Sequences: 28460
Number of extensions: 61492
Number of successful extensions: 348
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of query: 301
length of database: 4,897,600
effective HSP length: 90
effective length of query: 211
effective length of database: 2,336,200
effective search space: 492938200
effective search space used: 492938200
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Medicago: description of AC127429.4