TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC127429.2 + phase: 2 /pseudo
         (500 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC12867 similar to GB|AAL91627.1|19715609|AY075613 AT3g59630/T16...   143  1e-51
TC16864                                                               166  1e-41
AV765191                                                               89  1e-18
AV408648                                                               31  0.54
BP056414                                                               30  1.2

>TC12867 similar to GB|AAL91627.1|19715609|AY075613 AT3g59630/T16L24_180
           {Arabidopsis thaliana;}, partial (16%)
          Length = 788

 Score =  143 bits (360), Expect(2) = 1e-51
 Identities = 66/77 (85%), Positives = 70/77 (90%)
 Frame = +2

Query: 26  QFPDDLLKDSTRVVSVLRKRLRSLRESDTTGSGDEPDIGLFVMADTAYGSCCVDEVGASH 85
           QFPDDLLKDSTRVV+ LRKRL+SLRE D T S DE D+GLFVMADT YGSCCVDEVGASH
Sbjct: 419 QFPDDLLKDSTRVVTALRKRLQSLREFDVTSSADETDVGLFVMADTTYGSCCVDEVGASH 598

Query: 86  INADCVIHYGHTCFSPT 102
           INADCVIHYGHTCFSP+
Sbjct: 599 INADCVIHYGHTCFSPS 649



 Score = 77.4 bits (189), Expect(2) = 1e-51
 Identities = 36/47 (76%), Positives = 41/47 (86%)
 Frame = +1

Query: 138 VLYGLEYAHSIQQVRKALLESSTFCTSDPKSEVHFADVPSPYMFPSK 184
           VL+GLEYAHSI+ + KALLESS  C S+ KSEVHFADVPSP+MFPSK
Sbjct: 646 VLFGLEYAHSIEHISKALLESSMSCRSELKSEVHFADVPSPFMFPSK 786


>TC16864 
          Length = 520

 Score =  166 bits (419), Expect = 1e-41
 Identities = 84/117 (71%), Positives = 99/117 (83%), Gaps = 1/117 (0%)
 Frame = +2

Query: 385 VMGFGDLINLPQVQVGNQ-EEARFSFLKGGYVEDFENQENNVEEEREDLALANATEKALQ 443
           VMGF DLINL Q++V NQ EEARFSFL+G YVEDFENQEN  E++ E LALANATEKALQ
Sbjct: 2   VMGFRDLINLLQLKVENQDEEARFSFLQGRYVEDFENQENG-EQQSEALALANATEKALQ 178

Query: 444 LRDNCNSIIKGGAKSGAEFFANRTYQGLNIPDDNTTPQSFVIGRKGRAAGYEDENNK 500
           LR+NCNS+IKG A+SGAEFF NR+Y GLN+P +NT+P+ +  GR GRA+GYEDE NK
Sbjct: 179 LRENCNSLIKGDARSGAEFFRNRSYHGLNMPSENTSPEPYFKGRSGRASGYEDEKNK 349


>AV765191 
          Length = 330

 Score = 89.4 bits (220), Expect = 1e-18
 Identities = 38/59 (64%), Positives = 50/59 (84%)
 Frame = -1

Query: 442 LQLRDNCNSIIKGGAKSGAEFFANRTYQGLNIPDDNTTPQSFVIGRKGRAAGYEDENNK 500
           LQL++NCNS+I+G A+SGAEFF NR+Y GLN+P +NT+P+ +  GR GRA+GYEDE NK
Sbjct: 330 LQLQNNCNSLIRGDARSGAEFFRNRSYHGLNMPSENTSPEPYFKGRSGRASGYEDEKNK 154


>AV408648 
          Length = 430

 Score = 30.8 bits (68), Expect = 0.54
 Identities = 18/33 (54%), Positives = 22/33 (66%)
 Frame = -3

Query: 426 EEEREDLALANATEKALQLRDNCNSIIKGGAKS 458
           EEE E+ AL  +TE+ALQ RD  NSI   G +S
Sbjct: 143 EEEEEERALETSTEEALQERDK-NSIGSRGGRS 48


>BP056414 
          Length = 606

 Score = 29.6 bits (65), Expect = 1.2
 Identities = 30/147 (20%), Positives = 60/147 (40%), Gaps = 12/147 (8%)
 Frame = -3

Query: 168 SEVHFADVPSPYMFPSKDTKKLNDLQEETCGCGDNSSSDGASGAAYSIGGLTW------K 221
           S  H+   P  +   + D     DLQ    G   +++   + G A S+G L W      +
Sbjct: 574 SSYHWTRPPEGWFKVNVDGALSGDLQASCGGVVRDAAGSWSKGFARSLGVLRWHXAFFVE 395

Query: 222 LLEGQSMEDYSLFW------IGHDNSAFANVVLRFNACEIVRYDATKSQMVADLSQQRRI 275
           L+  Q+  D+ + W      I  D+     ++  FNA    +Y     ++  D+ QQ+  
Sbjct: 394 LMAVQTAVDFIMSWDIPQVIIESDSQQVVELLQNFNASSPHQY----GEIAWDI-QQKIS 230

Query: 276 LKRRYYLVERAKDANIVGILVGTLGVA 302
           +     +    ++AN +   +  +G++
Sbjct: 229 VHGSIVITSTPREANFLADYLAKVGLS 149


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,126,664
Number of Sequences: 28460
Number of extensions: 105812
Number of successful extensions: 470
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of query: 500
length of database: 4,897,600
effective HSP length: 94
effective length of query: 406
effective length of database: 2,222,360
effective search space: 902278160
effective search space used: 902278160
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)