TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC127429.13 - phase: 0 /pseudo
         (1603 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC16811                                                                34  0.21
TC14501 similar to UP|LEC_LOTTE (P19664) Anti-H(O) lectin (LTA),...    30  3.9
TC17683 weakly similar to UP|P93816 (P93816) F19P19.10, partial ...    30  3.9
BP084026                                                               29  5.1
TC10112 similar to UP|Q9ZVI5 (Q9ZVI5) At2g38630 protein, partial...    29  6.7
AV421754                                                               29  6.7
TC14066 homologue to UP|O64970 (O64970) Cationic peroxidase 2  ,...    28  8.7
TC14126 similar to UP|Q84UB0 (Q84UB0) Transcription factor Myb1,...    28  8.7

>TC16811 
          Length = 509

 Score = 33.9 bits (76), Expect = 0.21
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +3

Query: 407 IHRKFLEWNEDTKLYSTTPLGRASFGSSLCPEESLIVL 444
           IH++F+ W E TKL+   PL    FG+  CP+ +  +L
Sbjct: 273 IHKRFVSWPESTKLFIELPL-LTFFGNQSCPQATNFLL 383


>TC14501 similar to UP|LEC_LOTTE (P19664) Anti-H(O) lectin (LTA), partial
           (86%)
          Length = 1066

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
 Frame = -3

Query: 623 EVVELTTIPYVKGSRARALYKAGLRTPLAIAEASIPELVKALFESSSWGTEGSAQRSLQF 682
           E+ ELT+IP   G  +  L K    T     +AS+P ++  L    S+G       S+  
Sbjct: 560 EIRELTSIPICLGLESHGLMKVSNSTATI*LKASLPLIIPNLPPVDSFGI------SVPN 399

Query: 683 GVAKKIKNGA-----RKIVLDKAEEARIAAFSAFKS 713
           G  KK +  A     +  ++++ E  ++A     +S
Sbjct: 398 GARKKTRPSAGL*SSKSFIINEKEVTKLATLPVVES 291


>TC17683 weakly similar to UP|P93816 (P93816) F19P19.10, partial (5%)
          Length = 561

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 17/47 (36%), Positives = 24/47 (50%), Gaps = 1/47 (2%)
 Frame = -2

Query: 781 LVSVEGKSDSVMPHSLSTVPVVVP-SINELSMTSGPAKIPDVTTLSV 826
           L   +  SD  +PH L  VPV +  S   LS++S P ++PD     V
Sbjct: 155 LTHTKKSSDHTVPHFLFPVPVPIDRSSKLLSVSSRPPRVPDARVKDV 15


>BP084026 
          Length = 379

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +2

Query: 1187 LKLPIPDGKNKGKNHPSTGKHCLDALRVNARDY 1219
            L+ PIP GKN GKN  S+ K   D ++ + RD+
Sbjct: 254  LQDPIPSGKNLGKNLISSSKIHPDQIQFS*RDF 352


>TC10112 similar to UP|Q9ZVI5 (Q9ZVI5) At2g38630 protein, partial (8%)
          Length = 622

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
 Frame = +1

Query: 1514 LLLQTSMENAVSLLGLYSLNKLFFWPFLFG----CRHKLVKVIE 1553
            L+L  SM+ + SL+ +  L  L FW FLF     C H  VK+++
Sbjct: 112  LILLRSMKVSKSLVRINILYYLSFWSFLFNXYSLC*HVAVKILQ 243


>AV421754 
          Length = 416

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 14/35 (40%), Positives = 24/35 (68%)
 Frame = +3

Query: 960 KQDLMNAMHRWSRISKIIEKKEVRKFTWNLKVQIQ 994
           KQDL+N+  RW+  +  + + ++ K TW+LK+ IQ
Sbjct: 258 KQDLLNSNFRWA--ANGLLRIKLGKKTWSLKIVIQ 356


>TC14066 homologue to UP|O64970 (O64970) Cationic peroxidase 2  , partial
            (92%)
          Length = 1436

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 11/29 (37%), Positives = 17/29 (57%)
 Frame = -3

Query: 1027 LLPPIHVKDAIDMCIVAWILWPDEESSSS 1055
            L PP H    +  CI+++   P EE+SS+
Sbjct: 1176 LTPPTHPNRTLYFCIISYTFLPQEENSST 1090


>TC14126 similar to UP|Q84UB0 (Q84UB0) Transcription factor Myb1, partial
            (44%)
          Length = 1500

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 19/65 (29%), Positives = 28/65 (42%), Gaps = 3/65 (4%)
 Frame = +3

Query: 1529 LYSLNKLFFWPFLF---GCRHKLVKVIEDLTVWSNHIFTVYAYASAVPLNVKLKVGRTWG 1585
            +Y L  LF W F+F   GC  K       L +  +  +T   + + +  N+KL       
Sbjct: 1212 IYDLRFLFIWTFMFVVDGCNWK*PSTFCSLLITLDVDYTDVWFETLLVDNIKLGFNLKVW 1391

Query: 1586 SLEPF 1590
             LEPF
Sbjct: 1392 QLEPF 1406


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.320    0.136    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,235,679
Number of Sequences: 28460
Number of extensions: 372248
Number of successful extensions: 1778
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1778
length of query: 1603
length of database: 4,897,600
effective HSP length: 103
effective length of query: 1500
effective length of database: 1,966,220
effective search space: 2949330000
effective search space used: 2949330000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)