BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC127428.6 - phase: 0 /pseudo
(322 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP046353 70 6e-13
TC17039 similar to UP|AAR92355 (AAR92355) At1g30300, partial (22%) 67 3e-12
BP060006 67 4e-12
BP050894 60 6e-10
TC10413 homologue to UP|IM30_PEA (Q03943) Membrane-associated 30... 31 0.32
TC12789 similar to UP|Q9AT08 (Q9AT08) ADP-glucose pyrophosphoryl... 27 4.6
TC18505 similar to UP|Q9QCV0 (Q9QCV0) Terminase (Fragment), part... 27 4.6
TC11860 weakly similar to UP|Q40380 (Q40380) Arabinogalactan-pro... 27 6.1
BP077077 26 7.9
>BP046353
Length = 548
Score = 69.7 bits (169), Expect = 6e-13
Identities = 36/49 (73%), Positives = 39/49 (79%)
Frame = -1
Query: 263 DWIA*CSSLFSTDS*NCEEVVSKANPFDWNDS*V*SPQGQ*VFERVVQK 311
DWI *CS L S DS*NC+EVVSK NP W +S V*SPQGQ*VF+ VVQK
Sbjct: 539 DWIT*CSLLSSPDS*NCKEVVSKENPTSWYESRV*SPQGQ*VFDGVVQK 393
>TC17039 similar to UP|AAR92355 (AAR92355) At1g30300, partial (22%)
Length = 571
Score = 67.4 bits (163), Expect = 3e-12
Identities = 35/49 (71%), Positives = 38/49 (77%)
Frame = +3
Query: 263 DWIA*CSSLFSTDS*NCEEVVSKANPFDWNDS*V*SPQGQ*VFERVVQK 311
DWI *CS L S DS*NC+EVVSK NP W +S V*SPQG *VF+ VVQK
Sbjct: 15 DWIT*CSLLSSPDS*NCKEVVSKENPTSWYESRV*SPQGP*VFDGVVQK 161
>BP060006
Length = 469
Score = 67.0 bits (162), Expect = 4e-12
Identities = 40/94 (42%), Positives = 55/94 (57%)
Frame = +3
Query: 3 TSNGTDDGTPPSESALIFLGTGCSSMVPNVLCLINPSDPPCSVCAQSLSIPPEKNPNYRC 62
++NG G ++ +F+GTG S VP V CL NP CSVC+++ + P +K N R
Sbjct: 189 SANGGGGGAEIDQTEXVFMGTGTSEGVPRVSCLTNPLS-KCSVCSKA-ARPGDK--NRRL 356
Query: 63 NTSMLIDYCGSGSNHNYILIDVGKTFRETVLRWF 96
NTS+LI + HN ILID GK F + L+WF
Sbjct: 357 NTSILIRHPNPSGTHN-ILIDAGKFFYHSALQWF 455
>BP050894
Length = 537
Score = 59.7 bits (143), Expect = 6e-10
Identities = 34/67 (50%), Positives = 42/67 (61%)
Frame = -2
Query: 185 QPFFASGLKFTPLPVMHGEDYICLGFLFGEKSRVAYISDVSRIPASTEYVISKSGAGQLD 244
+PF GLKFTPLPV HG+ Y LGF FG + YISDVS IP T Y + K +
Sbjct: 521 EPFVVHGLKFTPLPVWHGKGYRSLGFRFG---NICYISDVSEIPEET-YPLLK----DCE 366
Query: 245 LLILDSL 251
+LI+D+L
Sbjct: 365 ILIMDAL 345
>TC10413 homologue to UP|IM30_PEA (Q03943) Membrane-associated 30 kDa
protein, chloroplast precursor (M30), partial (48%)
Length = 735
Score = 30.8 bits (68), Expect = 0.32
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 35 LINPSDPPCSVCAQSLSIPPEKNP 58
L+ P PP S C++SLS+PP P
Sbjct: 169 LLLPLPPPLSACSRSLSLPPSSAP 240
>TC12789 similar to UP|Q9AT08 (Q9AT08) ADP-glucose pyrophosphorylase
(Glucose-1-phosphate adenylyltransferase) (ADP-glucose
synthase) , partial (7%)
Length = 601
Score = 26.9 bits (58), Expect = 4.6
Identities = 20/55 (36%), Positives = 27/55 (48%), Gaps = 5/55 (9%)
Frame = -1
Query: 12 PPSESALIFLGTG-----CSSMVPNVLCLINPSDPPCSVCAQSLSIPPEKNPNYR 61
PP+E+AL + G CS M + C+ N S PP ++C S I P YR
Sbjct: 355 PPAETALFPVPGGRKWNFCS*M-KMLSCVYN*SPPPEALCVVSKEICLHGYPGYR 194
>TC18505 similar to UP|Q9QCV0 (Q9QCV0) Terminase (Fragment), partial (10%)
Length = 546
Score = 26.9 bits (58), Expect = 4.6
Identities = 12/56 (21%), Positives = 25/56 (44%)
Frame = -2
Query: 25 CSSMVPNVLCLINPSDPPCSVCAQSLSIPPEKNPNYRCNTSMLIDYCGSGSNHNYI 80
C+ V ++ + +P + ++ + +IP P Y C+ I G +HN +
Sbjct: 527 CNKNVHYIIIIRSPKNTNLTLKIKPYNIPNATTPTYICHNICQIQGTSLGEHHNLV 360
>TC11860 weakly similar to UP|Q40380 (Q40380) Arabinogalactan-protein
precursor, partial (17%)
Length = 492
Score = 26.6 bits (57), Expect = 6.1
Identities = 20/74 (27%), Positives = 30/74 (40%)
Frame = +2
Query: 2 ATSNGTDDGTPPSESALIFLGTGCSSMVPNVLCLINPSDPPCSVCAQSLSIPPEKNPNYR 61
A+S + P AL T S V +P+ P ++ S+S PP + P
Sbjct: 59 ASSPTKSESAAPPRKALSPTATPVSPAVSPSSTEESPAAVPAAITPSSISGPPSEAPGPA 238
Query: 62 CNTSMLIDYCGSGS 75
N ++L SGS
Sbjct: 239 ANGAVLNRVAVSGS 280
>BP077077
Length = 369
Score = 26.2 bits (56), Expect = 7.9
Identities = 22/87 (25%), Positives = 32/87 (36%)
Frame = -1
Query: 176 WNIITDDCNQPFFASGLKFTPLPVMHGEDYICLGFLFGEKSRVAYISDVSRIPASTEYVI 235
WN + N SGL F V DY+ F ++RV +I S Y
Sbjct: 324 WNAVRSKSN----CSGLIFLVPRVYLYHDYVIHSFTIFLRARVLFIYSFSSHD*FLVYSC 157
Query: 236 SKSGAGQLDLLILDSLYRFLSFFYVTT 262
S Q+ ++L S+ Y+ T
Sbjct: 156 RDSACSQISCILLMSIIESCC*LYIYT 76
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.332 0.145 0.468
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,468,708
Number of Sequences: 28460
Number of extensions: 103798
Number of successful extensions: 684
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of query: 322
length of database: 4,897,600
effective HSP length: 90
effective length of query: 232
effective length of database: 2,336,200
effective search space: 541998400
effective search space used: 541998400
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 55 (25.8 bits)
Medicago: description of AC127428.6