TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC127169.2 - phase: 0 
         (270 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC12486                                                                47  3e-06
TC8765                                                                 39  7e-04
BP051401                                                               25  0.35
BP045352                                                               28  1.6
AV416480                                                               28  2.2
AV416122                                                               27  3.7
BP046905                                                               27  3.7
TC12754 similar to UP|Q9FHM5 (Q9FHM5) Similarity to DNA-binding ...    27  4.8
TC18294                                                                26  6.3
BP041961                                                               26  8.2
TC8617 similar to UP|Q9SSZ4 (Q9SSZ4) Asparaginyl endopeptidase, ...    26  8.2

>TC12486 
          Length = 742

 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 22/44 (50%), Positives = 30/44 (68%)
 Frame = +2

Query: 25  FADDVVLVGESREEVNGRLETWRQALEAYGFRLSRSKTEYIECN 68
           F +  V V E RE++N RL   RQ L+ YGF L++SK EY+EC+
Sbjct: 116 FCELYVEVRELREDINARLAICRQTLQTYGF*LNKSKAEYMECS 247


>TC8765 
          Length = 748

 Score = 39.3 bits (90), Expect = 7e-04
 Identities = 18/31 (58%), Positives = 23/31 (74%)
 Frame = +3

Query: 198 VAPIVEKLVENRLRWFGHVERRPVDAVVRRV 228
           V P V KL E RLRW+GHV  R ++A+VRR+
Sbjct: 537 VVPNV*KLTEIRLRWYGHVPSRLMEALVRRI 629


>BP051401 
          Length = 507

 Score = 25.4 bits (54), Expect(2) = 0.35
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +3

Query: 201 IVEKLVENRLRWFGHVERRPVDAVVRRVYQMEDS 234
           IV  L+E+ LR   ++  RP++  VRRV Q +D+
Sbjct: 147 IVTILIESHLRL--NLRLRPIEIQVRRVVQKKDA 242



 Score = 23.5 bits (49), Expect(2) = 0.35
 Identities = 10/15 (66%), Positives = 12/15 (79%)
 Frame = +2

Query: 239 GRGRPRKTIRETIRK 253
           GRGRPRK +  TI+K
Sbjct: 254 GRGRPRKDLC*TIKK 298


>BP045352 
          Length = 434

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 9/26 (34%), Positives = 17/26 (64%)
 Frame = -1

Query: 154 RECWAVKSQHENQVSVAEMRMLRWMS 179
           R  W++KSQ    ++++   +LRW+S
Sbjct: 416 RRYWSIKSQRSKHMTISLNELLRWLS 339


>AV416480 
          Length = 410

 Score = 27.7 bits (60), Expect = 2.2
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 47  RQALEAYGFRLSRSKTEYIECNFSGRRSRSTLEVKVEDHII 87
           R  L AYG ++  S +EY++ N S   S      +V DH +
Sbjct: 208 RGGLGAYGGKILGSSSEYVQSNISRYFSDPQYYFQVNDHYV 330


>AV416122 
          Length = 414

 Score = 26.9 bits (58), Expect = 3.7
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +1

Query: 176 RWMSSKTRHDRTRNDTIRKRVEVAPIVEKLVENRLRWFG 214
           R M  KTR  RTR  T+R  + +A         RLRW G
Sbjct: 310 RRMMRKTRRKRTRKRTMRMMIRMA---------RLRWTG 399


>BP046905 
          Length = 538

 Score = 26.9 bits (58), Expect = 3.7
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
 Frame = -3

Query: 32  VGESREEVNGRLETWRQALEAYGF-----RLSRSKTEYIECNFSGRRSRSTLEVKVEDHI 86
           V ++    NG  ET +   E Y F      +   + EY+    SG+  + +L+   E  I
Sbjct: 530 VFKTESPANGVAETLQIKEERYDFSEFLPEMIEERPEYMSRQLSGKEWKPSLDTIKEKKI 351

Query: 87  IPQVTRSKYLGSFV 100
             +++R  +L SF+
Sbjct: 350 KKKLSRWFFLKSFI 309


>TC12754 similar to UP|Q9FHM5 (Q9FHM5) Similarity to DNA-binding protein,
           partial (24%)
          Length = 932

 Score = 26.6 bits (57), Expect = 4.8
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +1

Query: 237 KRGRGRPRKTIRETIRKDLE 256
           KRGRGRP ++I+++ + D E
Sbjct: 622 KRGRGRPVESIKKSFKLDFE 681


>TC18294 
          Length = 457

 Score = 26.2 bits (56), Expect = 6.3
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -3

Query: 150 LMYGRECWAVKSQHENQ 166
           LM   ECWA   QH NQ
Sbjct: 350 LMIDNECWAKLKQHSNQ 300


>BP041961 
          Length = 424

 Score = 25.8 bits (55), Expect = 8.2
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +2

Query: 1   MFNCFNRNMSVTE 13
           MF CFNR  SVTE
Sbjct: 143 MFKCFNRKFSVTE 181


>TC8617 similar to UP|Q9SSZ4 (Q9SSZ4) Asparaginyl endopeptidase, partial
           (44%)
          Length = 904

 Score = 25.8 bits (55), Expect = 8.2
 Identities = 10/43 (23%), Positives = 20/43 (46%)
 Frame = +3

Query: 155 ECWAVKSQHENQVSVAEMRMLRWMSSKTRHDRTRNDTIRKRVE 197
           + WA     +      ++  + WM    +HD T+ +T+ K+ E
Sbjct: 759 DSWACDCYEDYNAGEGDLYSVSWMEDSDKHDSTK-ETLEKQYE 884


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.322    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,404,553
Number of Sequences: 28460
Number of extensions: 54623
Number of successful extensions: 256
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of query: 270
length of database: 4,897,600
effective HSP length: 89
effective length of query: 181
effective length of database: 2,364,660
effective search space: 428003460
effective search space used: 428003460
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)