BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC127021.10 + phase: 0 /pseudo/partial
(264 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC16587 weakly similar to UP|Q9JGS5 (Q9JGS5) PORF1, partial (3%) 29 0.95
TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%) 28 1.6
TC9022 similar to PIR|T46225|T46225 alpha NAC-like protein - Ara... 28 1.6
BP048585 28 2.1
TC20120 weakly similar to UP|Q946Y3 (Q946Y3) SWITCH1 splice vari... 28 2.1
TC8844 similar to UP|Q9FNI7 (Q9FNI7) Glucosyltransferase-like pr... 27 2.8
AV410481 27 2.8
TC15394 similar to UP|Q9FFQ8 (Q9FFQ8) Emb|CAB62360.1, partial (16%) 27 3.6
BF177554 27 4.7
AV415674 27 4.7
TC7846 homologue to UP|PSBO_PEA (P14226) Oxygen-evolving enhance... 26 6.2
TC17799 weakly similar to UP|Q9LQZ3 (Q9LQZ3) F10A5.28, partial (8%) 26 8.0
BP037005 26 8.0
TC9596 similar to UP|AAR24722 (AAR24722) At5g49400, partial (66%) 26 8.0
>TC16587 weakly similar to UP|Q9JGS5 (Q9JGS5) PORF1, partial (3%)
Length = 706
Score = 28.9 bits (63), Expect = 0.95
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 212 NEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPD 249
N H TS S ++ALPS+ T+ ++ + S + +PD
Sbjct: 313 NSHSTSPHSSNLALPSEPLTALTTPKTPSPSSSKPAPD 426
>TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%)
Length = 1008
Score = 28.1 bits (61), Expect = 1.6
Identities = 20/79 (25%), Positives = 38/79 (47%)
Frame = -2
Query: 183 VTAIEEAKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASE 242
VT + A TL DL L ++ M+ + ET +S+ ++G+ + + +
Sbjct: 752 VTLVASAVVKATLLAADLCGLLLIN-MATTKGETKSQSEDKQHDAEGEDGNDDEGDE--D 582
Query: 243 SEEESPDGDSDEDQSCKDG 261
+ + P G+ +ED S +DG
Sbjct: 581 DDGDGPFGEGEEDLSSEDG 525
>TC9022 similar to PIR|T46225|T46225 alpha NAC-like protein - Arabidopsis
thaliana {Arabidopsis thaliana;}, partial (75%)
Length = 1083
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/65 (26%), Positives = 27/65 (41%)
Frame = +3
Query: 197 VEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDSDEDQ 256
V D S + E L+ ET+ K K + K E++++ + D DED
Sbjct: 114 VVDASSEAEALEQVLSAEETTLKKKPQPQEDDAPIVEDVKDDDKDEADDDEDEDDDDEDD 293
Query: 257 SCKDG 261
+DG
Sbjct: 294 DKEDG 308
>BP048585
Length = 520
Score = 27.7 bits (60), Expect = 2.1
Identities = 11/37 (29%), Positives = 18/37 (47%)
Frame = +3
Query: 226 PSKGKTSKSSKAYKASESEEESPDGDSDEDQSCKDGY 262
P K +S+ + ++ +GD D + CKDGY
Sbjct: 372 PEK*NNCRSTDLKQICTKHNQNREGDKDGEGGCKDGY 482
>TC20120 weakly similar to UP|Q946Y3 (Q946Y3) SWITCH1 splice variant S,
partial (9%)
Length = 557
Score = 27.7 bits (60), Expect = 2.1
Identities = 16/59 (27%), Positives = 26/59 (43%)
Frame = -3
Query: 25 WKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQKKLYKKHHKIRGII 83
W YS ++ +W++L+ EEGA D I PA + +KH G++
Sbjct: 168 WSAERYSLA---EQSMWEVLK---------EEGATFDNPITRPALRLAARKHIGDTGLL 28
>TC8844 similar to UP|Q9FNI7 (Q9FNI7) Glucosyltransferase-like protein
(AT5g22740/MDJ22_16), partial (55%)
Length = 1300
Score = 27.3 bits (59), Expect = 2.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 9 SGKAPKFNGDPEEFSWWKTNMYSF 32
SG++P F+G+P F W N++ F
Sbjct: 947 SGRSPIFSGEPFPFWWGTLNLHLF 1018
>AV410481
Length = 428
Score = 27.3 bits (59), Expect = 2.8
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 6/105 (5%)
Frame = +2
Query: 93 MKMSDKSTAK--AMFASLCANFEGSKKVKEAKALM--LVHQYELFRMKDDESIEEMYSRF 148
+ + STA+ + F S + S+ +K K L+ VH+ R+ +DE+I E+ +
Sbjct: 50 LSLQSDSTAEVTSRFQSADIDDSRSQSLKAIKQLVSEAVHEKSTPRLDEDETIAELATDA 229
Query: 149 QTLVSGLQILKKSYVVSDHVS--KILRSLPSRWRPKVTAIEEAKD 191
S + +L S D +S K + +P+ + T EAKD
Sbjct: 230 PEHPSPVSVLDDSVYRDDLLSPVKQISEVPNADDAQETEENEAKD 364
>TC15394 similar to UP|Q9FFQ8 (Q9FFQ8) Emb|CAB62360.1, partial (16%)
Length = 1093
Score = 26.9 bits (58), Expect = 3.6
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 2/93 (2%)
Frame = +2
Query: 170 KILRSLPSRWRPKVTAIEEAK--DLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPS 227
K +++PSR ++ K D NT ++ D++ L H ++ + K I
Sbjct: 437 KKAKAVPSREAMHAVVVDILKEVDFNTATLSDILRPLGTH-FGVDLMHRKAEVKDIITDV 613
Query: 228 KGKTSKSSKAYKASESEEESPDGDSDEDQSCKD 260
S E EE DGD+D+D + D
Sbjct: 614 INNMSDEE-----DEGEEADGDGDADKDDNGDD 697
>BF177554
Length = 246
Score = 26.6 bits (57), Expect = 4.7
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -2
Query: 226 PSKGKTSKSSKAYKASESEEESPDGDSDEDQSC 258
PS +S S + +S S +SP S E SC
Sbjct: 119 PSSSSSSSSPSSSSSSSSSLDSPASSSQESSSC 21
>AV415674
Length = 319
Score = 26.6 bits (57), Expect = 4.7
Identities = 17/61 (27%), Positives = 30/61 (48%)
Frame = +2
Query: 37 DEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQKKLYKKHHKIRGIIVASIPRTEYMKMS 96
DEE + E + L + + ++ ++KKL ++ +IRG V RT Y++ S
Sbjct: 110 DEERTALREAALAKFRLKRKERCFENKVRYHSRKKLAEQRPRIRGQFVR---RTVYVRCS 280
Query: 97 D 97
D
Sbjct: 281 D 283
>TC7846 homologue to UP|PSBO_PEA (P14226) Oxygen-evolving enhancer protein
1, chloroplast precursor (OEE1) (33 kDa subunit of
oxygen evolving system of photosystem II) (OEC 33 kDa
subunit) (33 kDa thylakoid membrane protein), partial
(50%)
Length = 689
Score = 26.2 bits (56), Expect = 6.2
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +3
Query: 22 FSWWKTNMYSFIM 34
F WW TN+Y F+M
Sbjct: 648 FFWWHTNIYMFLM 686
>TC17799 weakly similar to UP|Q9LQZ3 (Q9LQZ3) F10A5.28, partial (8%)
Length = 497
Score = 25.8 bits (55), Expect = 8.0
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +1
Query: 165 SDHVSKILRSLPSRWRPKVTAIEEAKDLNTLSVEDLVSSLKVHEMSLNE 213
SD V +LRS S I+ +D S ED+ S KVH ++ E
Sbjct: 130 SDRVEIVLRSTGSEENSNSNGIQVIRDDEDSSAEDMKS--KVHMFTIKE 270
>BP037005
Length = 569
Score = 25.8 bits (55), Expect = 8.0
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 210 SLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDSDEDQ 256
S +E + +KKSKS + K K A E+ PD D +E++
Sbjct: 176 SEDESDENKKSKSKDMKDKKPKPMYLKDVTARHLIEDGPDFDDEEEE 316
>TC9596 similar to UP|AAR24722 (AAR24722) At5g49400, partial (66%)
Length = 1196
Score = 25.8 bits (55), Expect = 8.0
Identities = 12/45 (26%), Positives = 18/45 (39%)
Frame = +2
Query: 213 EHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDSDEDQS 257
E ++ K KG+ K + S E + D DSD+ S
Sbjct: 767 EERRRRRKKKTQKKKKGRRHKKYSSSSESSDSESASDSDSDDKSS 901
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.310 0.127 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,754,522
Number of Sequences: 28460
Number of extensions: 40353
Number of successful extensions: 227
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of query: 264
length of database: 4,897,600
effective HSP length: 88
effective length of query: 176
effective length of database: 2,393,120
effective search space: 421189120
effective search space used: 421189120
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.4 bits)
Medicago: description of AC127021.10