TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC127020.7 + phase: 0 /pseudo
         (1459 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV768096                                                               40  0.003
TC15112 similar to UP|Q8VYI1 (Q8VYI1) At1g69640/F24J1.22, partia...    32  0.72
TC18927 similar to PIR|AI2934|AI2934 chromate transport protein ...    31  1.2
TC14108 similar to UP|CAHC_PEA (P17067) Carbonic anhydrase, chlo...    30  3.6
TC11308 similar to UP|CENB_HUMAN (P07199) Major centromere autoa...    30  3.6
BP036178                                                               30  3.6
AV777368                                                               29  6.1
TC16349 homologue to UP|PRS6_SOLTU (P54778) 26S protease regulat...    28  8.0

>AV768096 
          Length = 358

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 27/94 (28%), Positives = 39/94 (40%), Gaps = 4/94 (4%)
 Frame = +3

Query: 61  RAWKPGKRVTITKSVADRYLFQFHHKVDDARVLEEGPWLYDNFHIVLDRIAPSAVPNLVP 120
           RAW   + + +     + +LF F       R+L EGPW      + L    P      V 
Sbjct: 51  RAWGNLQDLQVGDLNLNTFLFTFSDANLATRILAEGPWNIMGNLLSLQFWDPQISMAEVH 230

Query: 121 LNHIEFWVQVHGLPFGFVQ----PKVGQGIGSFL 150
            N + FW Q HGLP  F+      K+   +G+ L
Sbjct: 231 FNLVPFWTQFHGLPMEFMSLTNVSKLAAAVGNLL 332


>TC15112 similar to UP|Q8VYI1 (Q8VYI1) At1g69640/F24J1.22, partial (37%)
          Length = 651

 Score = 32.0 bits (71), Expect = 0.72
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +1

Query: 636 HLLIICGFRIFPLLMLKLWWLRLLITTQFTS 666
           HLL I G+ +  + M ++W+LRLL+  +F+S
Sbjct: 406 HLLRIIGYTLSRMRMKRIWFLRLLLLKEFSS 498


>TC18927 similar to PIR|AI2934|AI2934 chromate transport protein chrA
           [imported] - Agrobacterium                tumefaciens
           (strain C58, Dupont) {Agrobacterium tumefaciens;},
           partial (6%)
          Length = 561

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 188 SNGNFVTVNFKYEKLGVFCHRCGVLGHTDKVCPEL 222
           S GNFV    + +   + CHRC   GH    CP+L
Sbjct: 383 SFGNFVPRPTQSDTSEIVCHRCSKKGHFANRCPDL 279


>TC14108 similar to UP|CAHC_PEA (P17067) Carbonic anhydrase, chloroplast
           precursor  (Carbonate dehydratase) , partial (98%)
          Length = 1458

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
 Frame = +1

Query: 332 PSSSTGTSASNLLPDRPIVLG----LPAAPL*SENTDDALEEIGSELKKRKRMLAIQNGE 387
           PSSS+ +S  +L+ DRP+       +P   +  +N ++A+EE+   L+++  + A    +
Sbjct: 172 PSSSSSSSFPSLIQDRPVFAAPAPIIPTLDM-GKNYEEAIEELQKLLREKNELKATAAEK 348

Query: 388 PSVAEGELG 396
                 +LG
Sbjct: 349 VEQITAQLG 375


>TC11308 similar to UP|CENB_HUMAN (P07199) Major centromere autoantigen B
           (Centromere protein B) (CENP-B), partial (4%)
          Length = 756

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -3

Query: 699 ILGRNILLIRSFRSFPHVRKTCLYGRKAIVIN*KRILKIV 738
           ILG   L +R  +  PH R+   +G+  +V+N + I+K+V
Sbjct: 670 ILGGTRLQVRFHQQRPHPREERAWGKNLLVVNRRWIIKVV 551


>BP036178 
          Length = 561

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -2

Query: 196 NFKYEKLGVFCHRCGVLGHTDKVC 219
           NFK  K  V C RC +LGH+ K C
Sbjct: 389 NFKRPKRIVQCGRCHMLGHSQKKC 318


>AV777368 
          Length = 604

 Score = 28.9 bits (63), Expect = 6.1
 Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
 Frame = +1

Query: 588 PLDLLGLLTAFVKLFLTLVYLMSRLKVIRSLGSKVSVIPAPSKKG*I--VHLLIICGFRI 645
           P D   +L  FV  F++++ L+ +L      GSK ++ P+P K   I   H L    +R 
Sbjct: 79  PHDPNDILFMFVLSFISMLLLLFKLP----RGSKRNLPPSPPKLPFIGNFHQLGTIPYRS 246

Query: 646 FPLLMLKLWWLRLLITTQFTSILLLHLGPMLLSVIFAMKM 685
           F  L  K           +  +LLLHLG + L V+ +  M
Sbjct: 247 FQTLSQK-----------YGPLLLLHLGHLPLLVVSSADM 333


>TC16349 homologue to UP|PRS6_SOLTU (P54778) 26S protease regulatory subunit
           6B homolog, partial (65%)
          Length = 901

 Score = 28.5 bits (62), Expect = 8.0
 Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
 Frame = +1

Query: 573 AILMTSSIQVRKGGTPLDLLGL-LTAFVKLFLTLVYLMSRLKVIRSLGSKVSVIPAPSKK 631
           AI M SS+   +   P  L    L + + L +TL  ++S+ +    L S    I + + K
Sbjct: 406 AIPMLSSMFFHRRQIPASLFSASLRSQMLLTMTLEGVISKSRKFVRLWSYPLHIMSYTNK 585

Query: 632 G*IVHLLIICGFRIFPLLMLKLWWLRLLI 660
             +V +L++  + + PL ++K  WLRLL+
Sbjct: 586 --LVLILLVVYYYMVPLALVKPCWLRLLL 666


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.351    0.158    0.526 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,657,522
Number of Sequences: 28460
Number of extensions: 377547
Number of successful extensions: 3195
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3193
length of query: 1459
length of database: 4,897,600
effective HSP length: 102
effective length of query: 1357
effective length of database: 1,994,680
effective search space: 2706780760
effective search space used: 2706780760
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 61 (28.1 bits)