BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126794.7 - phase: 1 /pseudo
(830 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC13695 similar to UP|Q84QI6 (Q84QI6) Auxin response factor-like... 302 2e-82
TC19318 similar to UP|Q94JM3 (Q94JM3) AT5g62000/mtg10_20, partia... 285 2e-77
BP042557 216 1e-56
TC13094 similar to UP|Q94JM3 (Q94JM3) AT5g62000/mtg10_20, partia... 207 7e-54
BP033179 202 1e-52
TC10030 similar to UP|Q94JM3 (Q94JM3) AT5g62000/mtg10_20, partia... 164 4e-43
AV410062 152 3e-37
BP049491 143 1e-34
AV409033 124 5e-29
AI967501 85 5e-17
AV408921 76 2e-14
TC10194 similar to UP|Q8S979 (Q8S979) Auxin response factor 7a (... 71 8e-13
BP043161 70 1e-12
AV781081 64 7e-11
AV779806 62 4e-10
TC18631 similar to GB|AAL06933.1|15810012|AY054274 AT3g17600/MKP... 45 4e-05
TC14115 homologue to UP|O22465 (O22465) GH1 protein (Fragment), ... 44 8e-05
AV416874 44 1e-04
AV422425 42 4e-04
TC12865 similar to UP|Q9ZTX8 (Q9ZTX8) ARF6 (Auxin response facto... 40 0.001
>TC13695 similar to UP|Q84QI6 (Q84QI6) Auxin response factor-like protein,
partial (12%)
Length = 773
Score = 302 bits (773), Expect = 2e-82
Identities = 163/259 (62%), Positives = 184/259 (70%), Gaps = 25/259 (9%)
Frame = +3
Query: 452 SSPDSSVLTREASSKVSMDPLPTSGFQRVLQGQESSTLRGNLAESNDSYTAEKSVAWTPA 511
SSPDSSVLTREASSKVS+DPLP +GF RVLQGQE STLRGN+AESN+S TAEKSVAW PA
Sbjct: 6 SSPDSSVLTREASSKVSVDPLPANGFPRVLQGQEFSTLRGNIAESNESDTAEKSVAWPPA 185
Query: 512 TDEEKMDAVSTSRRYGSENWMPMSRQEPTYSDLLSGFGS--------------------- 550
D+EKMD VSTSRRYGSE+WM M R E TYSDLLSGFG+
Sbjct: 186 VDDEKMDVVSTSRRYGSESWMSMGRNEATYSDLLSGFGAGGDPSHASMGDQMTHVAYPAR 365
Query: 551 ----TREGKHNMLTQWPVMPPGLSLNFLHSNMKGSAQGSDNATYQAQGNMRYSAFGDYSV 606
EG ++ W V P GLSLN L N KGSA G D A YQA+G+ RY+AFG+Y +
Sbjct: 366 KPSVDHEGNLHVHHTWHVTPSGLSLNLL-DNTKGSAHGDDTA-YQARGSSRYTAFGEYPM 539
Query: 607 LHGHKVENPHGNFLMPPPPPTQYESPHSRELSQKQMSAKISEAAKPKDSDCKLFGFSLLS 666
LHGHKVE+ HGN LMP P TQY+SP SREL K +S K EA KPKD DCKLFG SL+S
Sbjct: 540 LHGHKVEHSHGN-LMPHPSSTQYQSPRSRELMSKPLSVKACEAVKPKDGDCKLFGISLIS 716
Query: 667 SPTMLEPSLSQRNATSETS 685
SP EPS+SQRN T+ET+
Sbjct: 717 SPVAPEPSVSQRNGTTETA 773
>TC19318 similar to UP|Q94JM3 (Q94JM3) AT5g62000/mtg10_20, partial (23%)
Length = 585
Score = 285 bits (729), Expect = 2e-77
Identities = 152/198 (76%), Positives = 159/198 (79%), Gaps = 1/198 (0%)
Frame = +3
Query: 182 APPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGNE 241
AP + CKTLTASDTST GGFSVLRRHADECLPPLDMSKQPPTQ LVAKDLHG+E
Sbjct: 3 APAHTISLCILCKTLTASDTSTDGGFSVLRRHADECLPPLDMSKQPPTQALVAKDLHGSE 182
Query: 242 WRFRHIFRGELISGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQ 301
WRFRHIF G QPRRHLL SGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQ
Sbjct: 183 WRFRHIFLG-----QPRRHLLLSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQ 347
Query: 302 QGNVPSSVISSHSMHLGVLATAWHAVLTGTMFTVYYKPRTSPA-EFIVPYDQYMESLKNN 360
QGNV SSVISS S+HLGVLA+AWHA LTG+MFTVYY PRTSP+ + L NN
Sbjct: 348 QGNVSSSVISSPSLHLGVLASAWHANLTGSMFTVYY*PRTSPSCNLLFLMINTWSPLPNN 527
Query: 361 YTIGMRFKMRFEGEEAPE 378
YTI MRFK EGEE PE
Sbjct: 528 YTIAMRFK-*VEGEETPE 578
>BP042557
Length = 545
Score = 216 bits (550), Expect = 1e-56
Identities = 102/165 (61%), Positives = 131/165 (78%)
Frame = +2
Query: 192 FCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGNEWRFRHIFRGE 251
FCKTLTASDTSTHGGFSV RR A++ PPLD S+QPP QEL+A+DL+ NEW+FRHIFRG
Sbjct: 65 FCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELIARDLNDNEWKFRHIFRG- 241
Query: 252 LISGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVIS 311
QP+RHLL +GWSVFVS+KRLVAGD+ +F+ E +L +G+RRA R Q +PSSV+S
Sbjct: 242 ----QPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRSQTIMPSSVLS 409
Query: 312 SHSMHLGVLATAWHAVLTGTMFTVYYKPRTSPAEFIVPYDQYMES 356
S SMH+G+LA A HA T + FT++Y PR SP+EF++P QY+++
Sbjct: 410 SDSMHIGLLAAAAHAASTNSRFTIFYNPRASPSEFVIPLAQYVKA 544
>TC13094 similar to UP|Q94JM3 (Q94JM3) AT5g62000/mtg10_20, partial (18%)
Length = 685
Score = 207 bits (526), Expect = 7e-54
Identities = 98/112 (87%), Positives = 103/112 (91%)
Frame = +2
Query: 81 EAEAALYRELWHACAGPLVTVPREGELVFYFPQGHIEQVEASTNQASEQHMPVYDLRPKI 140
+AEAALYRELWHACAGPLVTVPREGE VFYFPQGHIEQVEASTNQ +++HMPVYDL KI
Sbjct: 350 DAEAALYRELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVADEHMPVYDLPSKI 529
Query: 141 LCRVINVMLKAEPDTDEVFAQVTLVPEPNQDENAVEKEAPPAPPPRFHVHSF 192
LCRVINV LKAEPDTDEVFAQVTL+PEPNQDENAVEKE PP P RFHVHSF
Sbjct: 530 LCRVINVQLKAEPDTDEVFAQVTLLPEPNQDENAVEKEPPPPPXXRFHVHSF 685
>BP033179
Length = 528
Score = 202 bits (515), Expect = 1e-52
Identities = 110/176 (62%), Positives = 119/176 (67%), Gaps = 26/176 (14%)
Frame = +3
Query: 466 KVSMDPLPTSGFQRVLQGQESSTLRGNLAESNDSYTAEKSVAWTPATDEEKMDAVSTSRR 525
KV+ DPLP SGF RVLQGQESSTLRGN AES +S TAEKSV W A D+EK+DA STSRR
Sbjct: 3 KVNADPLPASGFPRVLQGQESSTLRGNFAESIESNTAEKSVPWPRAADDEKIDAASTSRR 182
Query: 526 YGSENWMPMSRQEPTYSDLLSGFGST--------------------------REGKHNML 559
YGSE+WM M+RQEPTYSDLLSGFG+ REGKHN L
Sbjct: 183 YGSESWMLMARQEPTYSDLLSGFGARVDHSSHPSFVNQTGTVANTGRKSLIHREGKHNAL 362
Query: 560 TQWPVMPPGLSLNFLHSNMKGSAQGSDNATYQAQGNMRYSAFGDYSVLHGHKVENP 615
T W MP LSLN S KGS GSD A YQ QGN RYSAFG+Y VLHGHKVE+P
Sbjct: 363 TPWTGMPSSLSLNISDSKTKGSTLGSDVA-YQVQGNSRYSAFGEYHVLHGHKVEHP 527
>TC10030 similar to UP|Q94JM3 (Q94JM3) AT5g62000/mtg10_20, partial (13%)
Length = 588
Score = 164 bits (415), Expect(2) = 4e-43
Identities = 78/86 (90%), Positives = 81/86 (93%)
Frame = +3
Query: 81 EAEAALYRELWHACAGPLVTVPREGELVFYFPQGHIEQVEASTNQASEQHMPVYDLRPKI 140
+AE ALYRELWHACAGPLVTVPREGE VFYFPQGHIEQVEASTNQ +E HMPVYDL PKI
Sbjct: 330 DAETALYRELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVAELHMPVYDLPPKI 509
Query: 141 LCRVINVMLKAEPDTDEVFAQVTLVP 166
LCRVINVMLKAEPDTDEVFAQVTL+P
Sbjct: 510 LCRVINVMLKAEPDTDEVFAQVTLLP 587
Score = 28.5 bits (62), Expect(2) = 4e-43
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 9/51 (17%)
Frame = +2
Query: 8 RRKKHGIIRSIYEGKFCQRKR*-----KQR*W----CWRCSKWFFIVINRK 49
R ++G I +GKFC+R * +Q+ W C R S+WF IV + +
Sbjct: 179 RSVRNGDIGGNEQGKFCERNG*HQLQQQQQRW**KRCRRGSEWFIIVTDER 331
>AV410062
Length = 435
Score = 152 bits (383), Expect = 3e-37
Identities = 76/144 (52%), Positives = 100/144 (68%), Gaps = 1/144 (0%)
Frame = +3
Query: 98 LVTVPREGELVFYFPQGHIEQVEASTNQASEQHMPVY-DLRPKILCRVINVMLKAEPDTD 156
LV++P G V YFPQGH EQV STN+ + H+P Y L P+++C++ NV + A+ +TD
Sbjct: 3 LVSLPALGSRVVYFPQGHSEQVAVSTNKEVDAHIPNYPSLPPQLICQLHNVTMHADAETD 182
Query: 157 EVFAQVTLVPEPNQDENAVEKEAPPAPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADE 216
EV+AQ+TL P Q++ A P + + FCKTLTASDTSTHGGFSV RR A++
Sbjct: 183 EVYAQMTLQPLNPQEQKEAYLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEK 362
Query: 217 CLPPLDMSKQPPTQELVAKDLHGN 240
PPLD S+QPP QEL+A+DLHGN
Sbjct: 363 VFPPLDFSQQPPAQELIARDLHGN 434
>BP049491
Length = 516
Score = 143 bits (360), Expect = 1e-34
Identities = 69/132 (52%), Positives = 94/132 (70%)
Frame = -3
Query: 209 VLRRHADECLPPLDMSKQPPTQELVAKDLHGNEWRFRHIFRGELISGQPRRHLLQSGWSV 268
V RR A++CLPPLD +Q P+QELVAKDLHG EW+F HI+RG PR HLL +GWS+
Sbjct: 514 VPRRAAEDCLPPLDYKQQRPSQELVAKDLHGVEWKFCHIYRG*-----PRWHLLTTGWSI 350
Query: 269 FVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVL 328
FVS LV+GDA FLRGENGELR+G+RR++ + +P S + + + + +L+ +A+
Sbjct: 349 FVSQNNLVSGDAVSFLRGENGELRLGIRRSVGPRNGLPESTVGNQNSYPHILSVVANAIS 170
Query: 329 TGTMFTVYYKPR 340
T +MF V+Y PR
Sbjct: 169 TRSMFYVFYSPR 134
>AV409033
Length = 418
Score = 124 bits (312), Expect = 5e-29
Identities = 67/122 (54%), Positives = 81/122 (65%), Gaps = 1/122 (0%)
Frame = +3
Query: 89 ELWHACAGPLVTVPREGELVFYFPQGHIEQVEASTNQASEQHMPVY-DLRPKILCRVINV 147
ELWHACAGPLV++P G LV YFPQGH EQV AS Q +P Y +L K++C + NV
Sbjct: 51 ELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASM-QKETDFIPSYPNLPSKLICMLHNV 227
Query: 148 MLKAEPDTDEVFAQVTLVPEPNQDENAVEKEAPPAPPPRFHVHSFCKTLTASDTSTHGGF 207
L A+P+TDEV+AQ+TL P D++A+ R FCKTLTASDTSTHGGF
Sbjct: 228 ALHADPETDEVYAQMTLQPVNKYDKDAILASDMGLKQNRQPTEFFCKTLTASDTSTHGGF 407
Query: 208 SV 209
SV
Sbjct: 408 SV 413
>AI967501
Length = 393
Score = 84.7 bits (208), Expect = 5e-17
Identities = 61/152 (40%), Positives = 82/152 (53%)
Frame = +1
Query: 660 FGFSLLSSPTMLEPSLSQRNATSETSSHMQISSQHHTFENDQKSEHSKSSKPADKLVIVD 719
FG +SP ++ ++ AT+ T S S KS+ SK+S+
Sbjct: 4 FGTRENASPHVVNVPRAEVCATASTLSKTDSGS---------KSDISKASE--------- 129
Query: 720 EHEKQLQTSQPHVKDVQLKPQSGSARSCTKVHKKGIALGRSVDLTKFSDYDELTAELDQL 779
KQ Q P K+ Q K G RS TKV +G+A+GR+VDL YD+L EL+QL
Sbjct: 130 --RKQEQQQVPQ-KETQSKQICG--RSRTKVQMQGVAVGRAVDLNTLDGYDQLIDELEQL 294
Query: 780 FEFRGELISPQKDWLVVFTDNEGDMMLVGDDP 811
F+ +G+L K W +VFTD+EGDMMLVGDDP
Sbjct: 295 FDLKGQLQHRNK-WEIVFTDDEGDMMLVGDDP 387
>AV408921
Length = 429
Score = 76.3 bits (186), Expect = 2e-14
Identities = 32/38 (84%), Positives = 37/38 (97%)
Frame = +2
Query: 85 ALYRELWHACAGPLVTVPREGELVFYFPQGHIEQVEAS 122
ALY+ELWHACAGPLVT+PREGE V+YFPQGH+EQ+EAS
Sbjct: 314 ALYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEAS 427
>TC10194 similar to UP|Q8S979 (Q8S979) Auxin response factor 7a (Fragment),
partial (13%)
Length = 1293
Score = 70.9 bits (172), Expect = 8e-13
Identities = 33/69 (47%), Positives = 51/69 (73%), Gaps = 1/69 (1%)
Frame = +1
Query: 745 RSCTKVHKKGIALGRSVDLTKFSDYDELTAELDQLFEFRGELISPQK-DWLVVFTDNEGD 803
R+ TKV+K+G A+GRS+D+ ++S Y+EL +L + F G+L Q+ W +V+ D+EGD
Sbjct: 157 RTYTKVYKRG-AVGRSIDIARYSGYEELKQDLARRFGIEGQLEDRQRIGWKLVYVDHEGD 333
Query: 804 MMLVGDDPW 812
++LVGDDPW
Sbjct: 334 VLLVGDDPW 360
>BP043161
Length = 509
Score = 70.5 bits (171), Expect = 1e-12
Identities = 32/53 (60%), Positives = 37/53 (69%)
Frame = +2
Query: 86 LYRELWHACAGPLVTVPREGELVFYFPQGHIEQVEASTNQASEQHMPVYDLRP 138
L ELWHACAGPLV++P G V YFPQGH EQV A+TN+ + HMP Y P
Sbjct: 338 LNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVSATTNREVDGHMPNYPSLP 496
>AV781081
Length = 528
Score = 64.3 bits (155), Expect = 7e-11
Identities = 27/35 (77%), Positives = 31/35 (88%)
Frame = +2
Query: 89 ELWHACAGPLVTVPREGELVFYFPQGHIEQVEAST 123
ELWHACAGPLV++P+ G L +YFPQGHIEQV AST
Sbjct: 416 ELWHACAGPLVSLPQLGSLAYYFPQGHIEQVAAST 520
>AV779806
Length = 546
Score = 62.0 bits (149), Expect = 4e-10
Identities = 29/47 (61%), Positives = 34/47 (71%)
Frame = +2
Query: 86 LYRELWHACAGPLVTVPREGELVFYFPQGHIEQVEASTNQASEQHMP 132
L EL HACAGPLV++P G V YFPQGH EQV ASTN+ + H+P
Sbjct: 401 LNSELGHACAGPLVSLPPIGSRVVYFPQGHSEQVAASTNREVDAHIP 541
>TC18631 similar to GB|AAL06933.1|15810012|AY054274 AT3g17600/MKP6_15
{Arabidopsis thaliana;}, partial (46%)
Length = 888
Score = 45.4 bits (106), Expect = 4e-05
Identities = 39/157 (24%), Positives = 64/157 (39%), Gaps = 8/157 (5%)
Frame = +3
Query: 666 SSPTMLEPSLSQRNATS-ETSSHMQISSQHHTFENDQKSEHSKSSKPADKLVIVDEHEKQ 724
SS ++ S+ +RN T T + +S H + + + D I
Sbjct: 123 SSSSLCLSSVCRRNRTDLSTDLKLGLSISHSSQSESAYNSTPPREETFDWPPIKSTLRST 302
Query: 725 LQTSQPHVKDVQLKPQSGSARSCTKVHKKGIALGRSVDLTKFSDYDELTAELDQLFEFRG 784
L Q H +S + KV+ +GI +GR ++L + YD L L +F R
Sbjct: 303 LVEKQNH--------RSQTPSLFVKVYMEGIPIGRKLNLLEHHSYDGLVKSLGHMF--RT 452
Query: 785 ELISPQKD-------WLVVFTDNEGDMMLVGDDPWHL 814
++ P ++ + D EGD M+VGD PW +
Sbjct: 453 IILCPNSQPNHSGNFHVLTYEDQEGDWMMVGDVPWEM 563
>TC14115 homologue to UP|O22465 (O22465) GH1 protein (Fragment), partial
(83%)
Length = 1610
Score = 44.3 bits (103), Expect = 8e-05
Identities = 42/175 (24%), Positives = 71/175 (40%), Gaps = 30/175 (17%)
Frame = +3
Query: 670 MLEPSLSQRNATSETSSHMQISSQHHTFENDQKSEHSKSS----KPADKLVIV------D 719
ML P + T+ ++ + N H+ +S PA K +V
Sbjct: 594 MLSPRPAAAQPTTMNEMPNKMLQERPCAANGTGHNHTGASISGNAPASKAQVVGWPPIRS 773
Query: 720 EHEKQLQTSQPHVKDVQLKPQSGSARSCTKVHKKGIALGRSVDLTKFSDYDELTAELDQL 779
+ + T+ + +V KP G + KV G R VDL ++ Y EL++ L+++
Sbjct: 774 FRKNSMATTSKNNDEVDGKP--GLSALFVKVSMDGAPYLRKVDLRSYTTYQELSSALEKM 947
Query: 780 FEF------------RGELISPQK--------DWLVVFTDNEGDMMLVGDDPWHL 814
F EL+S K ++++ + D +GD MLVGD PW +
Sbjct: 948 FSCFTLGQCGSHGAPGRELLSESKLRDLLHGSEYVLSYEDKDGDWMLVGDVPWEM 1112
>AV416874
Length = 256
Score = 43.9 bits (102), Expect = 1e-04
Identities = 23/38 (60%), Positives = 28/38 (73%), Gaps = 3/38 (7%)
Frame = +2
Query: 273 KRLVAGDAFIFLRGENGELRVGVRRAMRQQG---NVPS 307
K+LVAGD+ +FLR ENG+L VG+RRA R G VPS
Sbjct: 5 KKLVAGDSVVFLRAENGDLCVGIRRAKRGIGGGAEVPS 118
>AV422425
Length = 428
Score = 42.0 bits (97), Expect = 4e-04
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 20/86 (23%)
Frame = +3
Query: 749 KVHKKGIALGRSVDLTKFSDYDELTAELDQLF--------------------EFRGELIS 788
KV +G R VDL FS Y EL++ L+++F E R +
Sbjct: 18 KVSMEGAPYLRKVDLNSFSTYRELSSALEKMFSCFTISQCGAYGVSSRENLSESRLMDLL 197
Query: 789 PQKDWLVVFTDNEGDMMLVGDDPWHL 814
++++ + D +GD MLVGD PW +
Sbjct: 198 HGSEYVLTYEDKDGDWMLVGDVPWEM 275
>TC12865 similar to UP|Q9ZTX8 (Q9ZTX8) ARF6 (Auxin response factor 6),
partial (6%)
Length = 659
Score = 40.4 bits (93), Expect = 0.001
Identities = 18/41 (43%), Positives = 26/41 (62%), Gaps = 3/41 (7%)
Frame = +2
Query: 775 ELDQLFEFRGELISP---QKDWLVVFTDNEGDMMLVGDDPW 812
EL ++F G+L P + W +VF D E D++L+GDDPW
Sbjct: 2 ELARIFGPEGQLEDPMTLRSGWQLVFVDRENDILLLGDDPW 124
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.322 0.136 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,807,520
Number of Sequences: 28460
Number of extensions: 263232
Number of successful extensions: 2845
Number of sequences better than 10.0: 126
Number of HSP's better than 10.0 without gapping: 2456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2776
length of query: 830
length of database: 4,897,600
effective HSP length: 98
effective length of query: 732
effective length of database: 2,108,520
effective search space: 1543436640
effective search space used: 1543436640
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Medicago: description of AC126794.7