BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126793.6 - phase: 0
(831 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP057316 240 6e-64
BP057998 140 6e-34
BP063299 137 5e-33
BP056393 108 5e-24
TC18755 similar to UP|AAN85378 (AAN85378) Resistance protein (Fr... 98 6e-21
BP052252 64 9e-17
BP055604 57 1e-08
BP033688 53 2e-07
TC18941 weakly similar to UP|Q8GZF0 (Q8GZF0) Resistance protein ... 49 3e-06
BP054702 48 7e-06
TC14265 weakly similar to UP|AAN62760 (AAN62760) Disease resista... 47 9e-06
AW719845 45 4e-05
BP063158 44 1e-04
TC18765 weakly similar to UP|Q9LVT1 (Q9LVT1) Disease resistance ... 43 2e-04
BI418116 43 2e-04
CB827028 42 3e-04
TC10205 weakly similar to UP|Q8RL77 (Q8RL77) HpaG, partial (10%) 42 4e-04
BP067300 42 5e-04
TC12204 weakly similar to UP|Q9ZSN3 (Q9ZSN3) NBS-LRR-like protei... 41 9e-04
BP085988 40 0.002
>BP057316
Length = 494
Score = 240 bits (613), Expect = 6e-64
Identities = 114/165 (69%), Positives = 140/165 (84%)
Frame = +2
Query: 150 LTAMRYLLVLDDIWNDSFEKWAQLKTYLMCGAQGSKVVVTTRSKVVAQTMGVSVPYTLNG 209
L+ +YLLVLDD WN+S++KW QL+ YLMCGAQGSKV+VTTRS++VAQTMGV V + LN
Sbjct: 5 LSGKKYLLVLDDTWNESYQKWTQLRKYLMCGAQGSKVLVTTRSQIVAQTMGVQVIHVLNS 184
Query: 210 LTPEKSWSLLKNIVTYGDETKGVLNQTLETIGKKIAVKCSGVPLAIRTLGGLLQGKSDET 269
LT E+SW LLK I D T+ ++Q+LE+IG+KIA KC GVPLAIRTLGGLLQ KS+E+
Sbjct: 185 LTLEESWGLLKKITFEDDATQ--VSQSLESIGEKIAEKCRGVPLAIRTLGGLLQSKSEES 358
Query: 270 EWVGVLQDDFWKLCEEEESIMPVLKLSYHNLSPQLRQCFAYCAIY 314
EW+ VLQ DFWKLCE+E+SI+PVLKLSY NLSPQ+RQCFAYC++Y
Sbjct: 359 EWMNVLQGDFWKLCEDEDSIIPVLKLSYQNLSPQIRQCFAYCSLY 493
>BP057998
Length = 566
Score = 140 bits (354), Expect = 6e-34
Identities = 72/184 (39%), Positives = 110/184 (59%)
Frame = +2
Query: 167 FEKWAQLKTYLMCGAQGSKVVVTTRSKVVAQTMGVSVPYTLNGLTPEKSWSLLKNIVTYG 226
+++W QLK G +GSK++VTTRS VA + + L+ L+ E WS+ N
Sbjct: 17 YDRWNQLKKPFQHGMRGSKILVTTRSDEVASVVQTGQTFNLSQLSNEDCWSVFANHACLF 196
Query: 227 DETKGVLNQTLETIGKKIAVKCSGVPLAIRTLGGLLQGKSDETEWVGVLQDDFWKLCEEE 286
G LE IG +I KC G+PLA ++LGGLL+ K + +W VL D W+L E E
Sbjct: 197 PGL-GENTIALEKIGLEIVKKCKGLPLAAQSLGGLLRRKHNIKDWNNVLNCDIWELSESE 373
Query: 287 ESIMPVLKLSYHNLSPQLRQCFAYCAIYPKDWKIHKHELIHLWMAQGYLECSAKKKLMED 346
I+P L++SYH L L++CFAY ++YPKD++ K+++I LWMA+ L + K + +
Sbjct: 374 SKIIPSLRISYHYLPSYLKRCFAYFSLYPKDYEFEKNDVILLWMAEDLLPPPKQGKTLNE 553
Query: 347 IGNQ 350
+G++
Sbjct: 554 VGDE 565
>BP063299
Length = 580
Score = 137 bits (346), Expect = 5e-33
Identities = 76/164 (46%), Positives = 98/164 (59%)
Frame = +3
Query: 186 VVVTTRSKVVAQTMGVSVPYTLNGLTPEKSWSLLKNIVTYGDETKGVLNQTLETIGKKIA 245
V+V+TR VA+ MG L GL+ W L K Y L IGK+I
Sbjct: 54 VLVSTRDMDVAEIMGTCQAQRLQGLSENDCWLLFKQ---YAFGANNEERAELVAIGKEIV 224
Query: 246 VKCSGVPLAIRTLGGLLQGKSDETEWVGVLQDDFWKLCEEEESIMPVLKLSYHNLSPQLR 305
KC G+PLA R LGGLL+ K++ EW V + W L +E I+P L LSY +L+P LR
Sbjct: 225 KKCGGLPLAARALGGLLRLKNEVKEWHEVKESTLWNL-PDERCILPALMLSYFHLTPTLR 401
Query: 306 QCFAYCAIYPKDWKIHKHELIHLWMAQGYLECSAKKKLMEDIGN 349
QCFA+CAI+PKD KI K +LI+LWMA G++ S K K +ED+GN
Sbjct: 402 QCFAFCAIFPKDAKIIKEDLIYLWMANGFIS-STKNKEVEDVGN 530
>BP056393
Length = 421
Score = 108 bits (269), Expect = 5e-24
Identities = 52/123 (42%), Positives = 77/123 (62%), Gaps = 4/123 (3%)
Frame = +1
Query: 218 LLKNIVTY----GDETKGVLNQTLETIGKKIAVKCSGVPLAIRTLGGLLQGKSDETEWVG 273
L+K +V + G + N T ETIG++I +C G PL ++LGGLL+GK D +
Sbjct: 43 LIKMLVCFASHAGISLESTGNMTFETIGRQIVKRCKGSPLXAQSLGGLLRGKHDIRDXNN 222
Query: 274 VLQDDFWKLCEEEESIMPVLKLSYHNLSPQLRQCFAYCAIYPKDWKIHKHELIHLWMAQG 333
+L + W+L E E +I+ L++SYH L P L++C YC+++PKD+K ELI LWMA+
Sbjct: 223 ILNSNIWELPENESNIILALRISYHYLPPHLKRCXVYCSLFPKDYKFDXDELILLWMAED 402
Query: 334 YLE 336
LE
Sbjct: 403 LLE 411
>TC18755 similar to UP|AAN85378 (AAN85378) Resistance protein (Fragment),
complete
Length = 880
Score = 97.8 bits (242), Expect = 6e-21
Identities = 70/235 (29%), Positives = 117/235 (49%), Gaps = 11/235 (4%)
Frame = +3
Query: 48 SEIIGREDDKKKIISLLRQSHENQNVSLVAIVGIGGLGKTALAQLVYNDAQVTKSFEKRM 107
++++G + KKK++ L + + V +++ G+GG+GKT L + VY+D V K F
Sbjct: 189 TDLVGIDRRKKKLMGCLIKPCPVRKV--ISVTGMGGMGKTTLVKQVYDDPVVIKHFRACA 362
Query: 108 WVCVSDNFDVKTILKKMLESLTNK-KIDDKLSLEN-----LQSMLRDTLTAMRYLLVLDD 161
W+ VS + ++ +L+ + L ++ + L LEN L+ +++D L RYL+V DD
Sbjct: 363 WITVSQSCEIGELLRDLARQLFSEIRRPVPLGLENMRCDRLKMIIKDLLQRRRYLVVFDD 542
Query: 162 IWNDSFEKWAQLKTYLMCGAQGSKVVVTTRSKVVAQTMGVSVP---YTLNGLTPEKSWSL 218
+W+ +W +K L GS++++TTR +A T Y L L +++W L
Sbjct: 543 VWH--VREWEAVKYALPDNNCGSRIMITTRRSDLAFTSSTESKGKVYNLQPLKEDEAWEL 716
Query: 219 LKNIVTYGDETKGVLNQTLETIGKKIAVKCSGVPLAIRTLGGLLQGKSDE--TEW 271
+GD L I I KC G+PLAI + G+L K EW
Sbjct: 717 FCRKTFHGDSCP----SHLIGICTYILRKCEGLPLAIVAISGVLATKDKRRIDEW 869
>BP052252
Length = 472
Score = 63.9 bits (154), Expect(2) = 9e-17
Identities = 33/70 (47%), Positives = 46/70 (65%)
Frame = -2
Query: 562 SDWHSSLTNLVEISIKKFYTLKYLPPMERLPFLKRLNLFCLDDLEYIYFEEPILPESFFP 621
S W+S L N+VEIS+ K T + +PP+E LPFLK L + +LE+IYF++ +FFP
Sbjct: 465 SKWNSWLANIVEISLIKCNTXRTIPPLEHLPFLKSLFICYHGELEFIYFQDG--RRTFFP 292
Query: 622 SLKKLIITDC 631
SL+KL C
Sbjct: 291 SLEKLCFIGC 262
Score = 40.4 bits (93), Expect(2) = 9e-17
Identities = 24/58 (41%), Positives = 32/58 (54%)
Frame = -3
Query: 633 KLRGWWRLRDDVNNVENSSQFHHLSFPPFSSHLSLLSIFSCPMLTCIPTFPNLDKTLH 690
+LRGW + DD +NV+ HLS P F LS LSI +C L C+PT + +H
Sbjct: 254 RLRGWCXMGDDFDNVD---YLRHLSLP*FP-RLSHLSIRNCEELICMPTLIRV*PGIH 93
>BP055604
Length = 464
Score = 57.0 bits (136), Expect = 1e-08
Identities = 27/62 (43%), Positives = 36/62 (57%)
Frame = -3
Query: 769 LSSLQHISIQRCRNLASLPEGMPRLSKLHTLEIFGCPLLVEECVTQTSATWSKISHIPNI 828
L SL+++ I C L SLP+G LS L L I GCP L E C T W KI+H+P++
Sbjct: 453 LHSLRYLRIWGCPGLRSLPDGFQHLSALERLIIEGCPELKERCKEGTGEDWDKIAHVPDV 274
Query: 829 IL 830
+
Sbjct: 273 YI 268
>BP033688
Length = 481
Score = 52.8 bits (125), Expect = 2e-07
Identities = 27/45 (60%), Positives = 31/45 (68%)
Frame = -1
Query: 786 LPEGMPRLSKLHTLEIFGCPLLVEECVTQTSATWSKISHIPNIIL 830
LPE MPRL+ L TLEI CP L+EEC S +I+HIPNIIL
Sbjct: 298 LPEAMPRLTNLKTLEIIQCPRLIEECKNGAS---HQIAHIPNIIL 173
>TC18941 weakly similar to UP|Q8GZF0 (Q8GZF0) Resistance protein KR4,
partial (3%)
Length = 569
Score = 48.9 bits (115), Expect = 3e-06
Identities = 33/79 (41%), Positives = 43/79 (53%), Gaps = 2/79 (2%)
Frame = +2
Query: 754 CNCSDLKVLPD-WICNLSSLQHISIQRCRNLASLPE-GMPRLSKLHTLEIFGCPLLVEEC 811
CN D+K L W+ +L+SL+ + I L SLPE G+P S L L I CPLL C
Sbjct: 20 CNLHDVKCLGGIWLQHLTSLEKLEICYSPQLESLPEEGLP--SSLSVLIIXPCPLLEASC 193
Query: 812 VTQTSATWSKISHIPNIIL 830
+ KI+HIP II+
Sbjct: 194 HSHGGKECPKIAHIPCIII 250
>BP054702
Length = 528
Score = 47.8 bits (112), Expect = 7e-06
Identities = 40/127 (31%), Positives = 61/127 (47%), Gaps = 2/127 (1%)
Frame = -3
Query: 704 NMVGSELAIEFPPLSKLKYLRLGGEDLDLKILPFFKEDHNFLSSIQNFEFCNCSDLKVLP 763
+M E +FP L+ L +L + G D ++ ++ +S+ N S LK L
Sbjct: 517 SMSKHEFGSQFPHLTSLSHLYVFGFG-DQDLMNTLLKERLLPTSLVFLGLYNFSSLKFLE 341
Query: 764 -DWICNLSSLQHISIQRCRNLASLPEG-MPRLSKLHTLEIFGCPLLVEECVTQTSATWSK 821
+ + +LSSL + I +C +L SLPE +P L L + CPLL + WSK
Sbjct: 340 GNGLQHLSSLHQLHIDKCPSLVSLPEDQLPH--SLAVLNLEKCPLLEARYRIRKGKHWSK 167
Query: 822 ISHIPNI 828
+S IP I
Sbjct: 166 VSRIPVI 146
>TC14265 weakly similar to UP|AAN62760 (AAN62760) Disease resistance
protein-like protein MsR1, partial (5%)
Length = 766
Score = 47.4 bits (111), Expect = 9e-06
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 12/93 (12%)
Frame = +1
Query: 745 LSSIQNFEFCNCSDLKVLPDWICNLSSLQHISIQRCRNLASLPEGMPRLSKLHTL---EI 801
L +++ +C+DLK LPD I LS L+ + I C +L SLPE + L L +L
Sbjct: 16 LENLELLRLSSCTDLKGLPDSIGRLSKLRLLDISNCISLPSLPEEIGNLCNLKSLYMTSC 195
Query: 802 FGCPL---------LVEECVTQTSATWSKISHI 825
GC L L C +T+A+W ++
Sbjct: 196 AGCELPSSIVNLQNLTVVCDEETAASWEAFEYV 294
Score = 33.9 bits (76), Expect = 0.11
Identities = 19/48 (39%), Positives = 27/48 (55%), Gaps = 3/48 (6%)
Frame = +1
Query: 766 ICNLSSLQHISIQRCRNLASLPEGMPRLSKLHTLEIFGC---PLLVEE 810
I L +L+ + + C +L LP+ + RLSKL L+I C P L EE
Sbjct: 7 IGKLENLELLRLSSCTDLKGLPDSIGRLSKLRLLDISNCISLPSLPEE 150
>AW719845
Length = 209
Score = 45.4 bits (106), Expect = 4e-05
Identities = 26/67 (38%), Positives = 40/67 (58%), Gaps = 1/67 (1%)
Frame = +3
Query: 61 ISLLRQSHENQNVSLVAIVGIGGLGKTALAQLVYNDAQVTKSF-EKRMWVCVSDNFDVKT 119
+S L+ VS+VA+ G+GGLGKT LA +V D Q+ F E ++V S +VK
Sbjct: 3 LSKLKMELLKDGVSVVAVTGLGGLGKTTLAAMVCWDKQIKGKFRENILFVTFSKTPNVKN 182
Query: 120 ILKKMLE 126
I++++ E
Sbjct: 183 IVERLFE 203
>BP063158
Length = 431
Score = 43.5 bits (101), Expect = 1e-04
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = -1
Query: 766 ICNLSSLQHISIQRCRNLASLPE-GMPRLSKLHTLEIFG-CPLLVEECVTQTSATWSKIS 823
+C+L SL + + C L LPE G+P+ + TL I CPLL + C W KIS
Sbjct: 344 LCHLPSLTELRLSDCSGLPCLPEEGLPK--SISTLSIRRMCPLLKQRCQKPHGEDWGKIS 171
Query: 824 HIPNIILD 831
H I +D
Sbjct: 170 HSKLIFID 147
>TC18765 weakly similar to UP|Q9LVT1 (Q9LVT1) Disease resistance
protein-like, partial (18%)
Length = 688
Score = 43.1 bits (100), Expect = 2e-04
Identities = 54/243 (22%), Positives = 111/243 (45%), Gaps = 8/243 (3%)
Frame = +2
Query: 86 KTALAQLVYNDAQVTKSFEKR-MWVCVSDNFDVKTILKKMLESLT-NKKIDDKLSLENLQ 143
KT LA+ V D QV F++R +++ VS + +V+ + K+ + N+ ++ ++
Sbjct: 2 KTTLAREVCRDDQVRCHFKERILFLTVSQSPNVEELRAKIFGHIMGNRGLNANYAVPQWM 181
Query: 144 SMLRDTLTAMRYLLVLDDIWNDSFEKWAQLKTYLMCGAQGSKVVVTTRSK---VVAQTMG 200
+ + + L+VLDD+W+ + L+ G K +V +R K + T
Sbjct: 182 PQF-ECQSQSQILVVLDDVWS------LPVLEQLVLRVPGCKYLVVSRFKFQRIFNDTYD 340
Query: 201 VSVPYTLNGLTPEKSWSLLKNIVTYGDETKGVLNQTLETIGKKIAVKCSGVPLAIRTLGG 260
V + + L+ + + +G NQ L K++ +C +PLA++ +G
Sbjct: 341 VELLSEGDALSLFCHHAFGHKSIPFG------ANQNLI---KQVVAECGRLPLALKVIGA 493
Query: 261 LLQGKSDETEWVGV---LQDDFWKLCEEEESIMPVLKLSYHNLSPQLRQCFAYCAIYPKD 317
L+ ++ E W+ V L E +++ + +S + L ++++CF +P+D
Sbjct: 494 SLRDQN-EMFWLSVKTRLSQGLSIGESYEVNLIDRMAISTNYLPEKVKECFLDLCAFPED 670
Query: 318 WKI 320
KI
Sbjct: 671 KKI 679
>BI418116
Length = 584
Score = 42.7 bits (99), Expect = 2e-04
Identities = 20/64 (31%), Positives = 37/64 (57%)
Frame = +2
Query: 1 MAHEIEKLQTKFNDVVKDMPGLNLNSNVVVVEQSDIVRRETSSFVLESEIIGREDDKKKI 60
+ H ++ +Q + +D+ + L L+ + V + +R+T SFV + E+IGRED+K +
Sbjct: 371 LGHNMKAIQKRLHDIANNKQALQLSDHPVETPTAYREQRQTYSFVSKDEVIGREDEKTLL 550
Query: 61 ISLL 64
S L
Sbjct: 551 TSYL 562
>CB827028
Length = 572
Score = 42.4 bits (98), Expect = 3e-04
Identities = 41/189 (21%), Positives = 78/189 (40%), Gaps = 6/189 (3%)
Frame = +2
Query: 204 PYTLNGLTPEKSWSLLKNIVTYGDETKGVLNQTLETIGKKIAVKCSGVPLAIRTLGGLLQ 263
PY L L+ + + SL + + + + ++ KKI C P+A+ G L+
Sbjct: 38 PYVLERLSLDYATSLFLHSASLSPNS----TEIPVSLVKKIVKGCKRSPIALTVTGTSLK 205
Query: 264 GKSDETEWVGVLQ--DDFWKLCEEEESIMPVLKLSYHNLSPQLRQCFAYCAIYPKDWKIH 321
K+ W + + E ++ L+ S L P +CF ++P+D +I
Sbjct: 206 NKNLAV-WRSRAKALSKGQSILESNHDVLTCLQKSLDVLDPIAIECFKDLGLFPEDQRIP 382
Query: 322 KHELIHLWMAQGYLEC----SAKKKLMEDIGNQFVNIFLMKSFLQDVETDSCGDIHSFKM 377
L+ +W L C +A +K+ E + +IF+ + D+ + H
Sbjct: 383 AAALVDMW---AELRCGDDETAMEKIYELVNLNMADIFVTRKVANDIVD---YNYHYVAQ 544
Query: 378 HDLIHDLAM 386
H L+ +LA+
Sbjct: 545 HGLLRELAI 571
>TC10205 weakly similar to UP|Q8RL77 (Q8RL77) HpaG, partial (10%)
Length = 586
Score = 42.0 bits (97), Expect = 4e-04
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 14/78 (17%)
Frame = +3
Query: 762 LPDWICNLSSLQHISIQRCRNLASLPEGMPRLSKLHTLEIFGCPLLVE------------ 809
LP I NL +Q + I C +L+ LPE M L KL L + GC L E
Sbjct: 9 LPKSITNLEQVQFLDISDCISLSHLPEDMGELKKLEKLNVRGCSRLTELPTSIMDLENLE 188
Query: 810 --ECVTQTSATWSKISHI 825
EC + + W + I
Sbjct: 189 EVECDEEIAELWEPVQQI 242
>BP067300
Length = 523
Score = 41.6 bits (96), Expect = 5e-04
Identities = 24/65 (36%), Positives = 33/65 (49%)
Frame = -2
Query: 764 DWICNLSSLQHISIQRCRNLASLPEGMPRLSKLHTLEIFGCPLLVEECVTQTSATWSKIS 823
D + L+SL+ + I C L +P +P + TL I P L E C + S W KI+
Sbjct: 507 DSLQKLTSLETLGIACCPKLQCMPAKLP--CSISTLHIVRSPRLEERCRGRKSEDWPKIA 334
Query: 824 HIPNI 828
HIP I
Sbjct: 333 HIPMI 319
>TC12204 weakly similar to UP|Q9ZSN3 (Q9ZSN3) NBS-LRR-like protein cD7
(Fragment), partial (3%)
Length = 328
Score = 40.8 bits (94), Expect = 9e-04
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +1
Query: 744 FLSSIQNFEFCNCSDLKVLPDWICNLSSLQHISIQRCRNLASLPEGMPR-LSKLHTLEIF 802
+L S+ + CNC + + P+ ++ ++ +++C+ L S P+ M + L L TL I
Sbjct: 43 YLQSLNSLRICNCPNFESFPEGGLRAPNMTNLHLEKCKKLKSFPQQMNKMLLSLMTLNIK 222
Query: 803 GCPLL 807
CP L
Sbjct: 223 ECPEL 237
>BP085988
Length = 474
Score = 40.0 bits (92), Expect = 0.002
Identities = 18/39 (46%), Positives = 23/39 (58%)
Frame = -2
Query: 793 LSKLHTLEIFGCPLLVEECVTQTSATWSKISHIPNIILD 831
LS L L I GCP L E C T W KI+H+P +I++
Sbjct: 473 LSALERLIIEGCPELKERCKEGTGEDWDKIAHVPLVIIE 357
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.322 0.138 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,876,332
Number of Sequences: 28460
Number of extensions: 248036
Number of successful extensions: 1432
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 1399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1420
length of query: 831
length of database: 4,897,600
effective HSP length: 98
effective length of query: 733
effective length of database: 2,108,520
effective search space: 1545545160
effective search space used: 1545545160
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Medicago: description of AC126793.6