TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC126792.7 - phase: 0 
         (253 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC12486                                                                47  2e-08
BP046905                                                               28  1.2
BP062667                                                               27  2.6
BP045352                                                               27  3.4
TC7914 similar to UP|Q8VYW9 (Q8VYW9) Aminotransferase 1, complete      27  4.4
BU494436                                                               26  7.5
TC14888                                                                25  9.8
CB826823                                                               25  9.8
AV416480                                                               25  9.8

>TC12486 
          Length = 742

 Score = 47.4 bits (111), Expect(2) = 2e-08
 Identities = 22/44 (50%), Positives = 30/44 (68%)
 Frame = +2

Query: 67  FADDVVLVGDSREEVNGRLETWRQALEAYGFCLSRSKTEYMECN 110
           F +  V V + RE++N RL   RQ L+ YGF L++SK EYMEC+
Sbjct: 116 FCELYVEVRELREDINARLAICRQTLQTYGF*LNKSKAEYMECS 247



 Score = 26.9 bits (58), Expect(2) = 2e-08
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 41 LSPYIFTLVLDVLTEHIQELAPRCMLFAD 69
          LS Y F +VLD+L E I      CMLF +
Sbjct: 39 LSHYHFIVVLDMLIEQI*ATMQLCMLFVN 125


>BP046905 
          Length = 538

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 19/66 (28%), Positives = 32/66 (47%), Gaps = 5/66 (7%)
 Frame = -3

Query: 82  NGRLETWRQALEAYGFC-----LSRSKTEYMECNFSGRRSKSTLEVKVGDHIIPQVTRFK 136
           NG  ET +   E Y F      +   + EYM    SG+  K +L+      I  +++R+ 
Sbjct: 506 NGVAETLQIKEERYDFSEFLPEMIEERPEYMSRQLSGKEWKPSLDTIKEKKIKKKLSRWF 327

Query: 137 YLESFV 142
           +L+SF+
Sbjct: 326 FLKSFI 309


>BP062667 
          Length = 528

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 11/29 (37%), Positives = 17/29 (57%)
 Frame = -2

Query: 2   IAYIRAIKDMYEGASTSVRTQDGTTEDFP 30
           + ++  I D  +GAS++V T   TT  FP
Sbjct: 407 LGFVETIADALDGASSAVLTSASTTGSFP 321


>BP045352 
          Length = 434

 Score = 26.9 bits (58), Expect = 3.4
 Identities = 8/23 (34%), Positives = 16/23 (68%)
 Frame = -1

Query: 199 WAVKSQHENQVSVAEMRMLRWMS 221
           W++KSQ    ++++   +LRW+S
Sbjct: 407 WSIKSQRSKHMTISLNELLRWLS 339


>TC7914 similar to UP|Q8VYW9 (Q8VYW9) Aminotransferase 1, complete
          Length = 1532

 Score = 26.6 bits (57), Expect = 4.4
 Identities = 14/31 (45%), Positives = 18/31 (57%)
 Frame = -1

Query: 223  KTRHDRIRNDIIRERERESGGSTYSRKVGRK 253
            KT H+R  NDI ++ E    GS  + KVG K
Sbjct: 1526 KTTHNRCSNDIYQDNE----GSNNASKVGNK 1446


>BU494436 
          Length = 449

 Score = 25.8 bits (55), Expect = 7.5
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = +3

Query: 154 HRIQVGWLKWRRASCVLCDKKVPFKLKGKFYRTAVRSALLYGTECW 199
           H+ + GW  W+R  C    +   ++L G          +LY  +CW
Sbjct: 120 HQCRSGWEGWQRIVCTCHWQAGCYQL*GDDAGYCFLDRVLYQDDCW 257


>TC14888 
          Length = 573

 Score = 25.4 bits (54), Expect = 9.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 97  FCLSRSKTEYMECNFSGR 114
           FCLS   T+   C+FSGR
Sbjct: 237 FCLSHLGTDSYSCHFSGR 184


>CB826823 
          Length = 429

 Score = 25.4 bits (54), Expect = 9.8
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = +1

Query: 235 RERERESGGSTYSRKVGRK 253
           RERERE GG+T  R++GR+
Sbjct: 316 RERERERGGTT--RELGRR 366


>AV416480 
          Length = 410

 Score = 25.4 bits (54), Expect = 9.8
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 89  RQALEAYGFCLSRSKTEYMECNFSGRRSKSTLEVKVGDHII 129
           R  L AYG  +  S +EY++ N S   S      +V DH +
Sbjct: 208 RGGLGAYGGKILGSSSEYVQSNISRYFSDPQYYFQVNDHYV 330


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,286,699
Number of Sequences: 28460
Number of extensions: 58991
Number of successful extensions: 260
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of query: 253
length of database: 4,897,600
effective HSP length: 88
effective length of query: 165
effective length of database: 2,393,120
effective search space: 394864800
effective search space used: 394864800
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)