BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126790.9 + phase: 0 /pseudo
(1040 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC13186 weakly similar to UP|Q8W2C0 (Q8W2C0) Functional candidat... 151 6e-37
TC12566 similar to UP|Q84XI1 (Q84XI1) RCa1 (Fragment), partial (... 134 1e-31
AV406755 125 3e-29
CB828263 123 2e-28
AV779547 121 5e-28
TC19146 similar to UP|Q8S4X3 (Q8S4X3) TIR-similar-domain-contain... 120 8e-28
AV778571 113 1e-25
AV409408 112 2e-25
BP045440 110 1e-24
BP065014 101 5e-22
BP064315 93 2e-19
AV410283 91 7e-19
AV427118 80 2e-15
TC18755 similar to UP|AAN85378 (AAN85378) Resistance protein (Fr... 76 3e-14
BP065724 74 9e-14
AI967395 70 2e-12
TC12516 similar to UP|Q9M5V7 (Q9M5V7) Disease resistance-like pr... 69 3e-12
TC9932 weakly similar to UP|Q93YA7 (Q93YA7) Resistance gene-like... 66 2e-11
AV774918 66 3e-11
TC20188 weakly similar to UP|Q8S4X3 (Q8S4X3) TIR-similar-domain-... 61 8e-10
>TC13186 weakly similar to UP|Q8W2C0 (Q8W2C0) Functional candidate
resistance protein KR1, partial (6%)
Length = 586
Score = 151 bits (381), Expect = 6e-37
Identities = 83/159 (52%), Positives = 110/159 (68%), Gaps = 1/159 (0%)
Frame = +1
Query: 16 YQVFLSFRGSDTRYGFTGNLYKALTDKGINTFIDKNGLQRGDEITPSL-LKAIEESRIFI 74
Y VF+S SDTR+GF+G+LY AL+DKGI TFID +GL R D+I ++ KAIE SRI I
Sbjct: 103 YDVFISLITSDTRFGFSGDLYTALSDKGILTFID-DGLPRPDDIMSTVNSKAIESSRIAI 279
Query: 75 PVFSINYASSSFCLDELVHIIHCYKTKGRLVLPVFFGVEPTVVRHRKGSYGEALAEHEKR 134
V S NYASSSFCLDEL++I+ + KG L+ PVF+ VEP+ VR++KG +G+A A HE+R
Sbjct: 280 VVISENYASSSFCLDELMYILKRREEKGLLIWPVFYQVEPSDVRYQKGGFGKAFASHEER 459
Query: 135 FQNDPKNMERLQGWKKALSQAANLSGYHDSPPGYEYKLI 173
F +D + + W+ AL Q A+L +H GY LI
Sbjct: 460 FGSDSAKVRK---WRNALKQVADLKAFHFFKHGYHTSLI 567
>TC12566 similar to UP|Q84XI1 (Q84XI1) RCa1 (Fragment), partial (28%)
Length = 918
Score = 134 bits (336), Expect = 1e-31
Identities = 84/267 (31%), Positives = 148/267 (54%), Gaps = 4/267 (1%)
Frame = +1
Query: 345 ESTHAVEGLNETEALELLRWMAFKSDKVPSGYEDILNRAVAYAFGLPLVLEVVGSNLFGK 404
+ + V+ ++ ++L+L AFK + Y D+ + ++YA G+PL L+V+G L+G+
Sbjct: 4 DEIYEVKEMSFEDSLQLFSLNAFKRNDPLETYIDLSKKLLSYAKGIPLALKVLGLFLYGR 183
Query: 405 SIEDWKHTLDGYDRIPNKEIQKILKVSYDALEEEEQSVFLDIACCFKGYQWKEFEDILCA 464
+ W+ L +++P+ EI +LK+SYD L+++++ +FLDIAC + G+ E+ +
Sbjct: 184 ERKAWESQLVKLEKLPDPEIINVLKLSYDGLDDDQKDIFLDIACFYLGH----LEESVAQ 351
Query: 465 HYDHC---ITHHLGVLAGKSLVKISTYYPSGSINDVRLHDLIKDMGKEVVRQESPKEPGE 521
D C + VL + L+ I + +HDLI+ MGKE+VRQ+ P +PG+
Sbjct: 352 TLDSCGFFADIGMEVLKDRCLISILE-------GRIVMHDLIEVMGKEIVRQQCPNDPGK 510
Query: 522 RSRLWRQEDIIHVLKENTGTSKIEMIYMNLHSMESVIDKKGKAFKKMTKLKTL-IIENGL 580
RSRLW + VL +N GT I+ I++ ++ +++ + FK MT L+ L ++ +
Sbjct: 511 RSRLWNDDQTYDVLGKNKGTDAIQCIFLYTCPIK-IVNLHAETFKYMTNLRMLQFYKSRV 687
Query: 581 FSGGLKYLPSSLRVLKWKGCLSKCLSS 607
S L+ PS + WK S +SS
Sbjct: 688 CSLALECDPS---CISWKSPESFTISS 759
>AV406755
Length = 425
Score = 125 bits (314), Expect = 3e-29
Identities = 62/115 (53%), Positives = 85/115 (73%)
Frame = +3
Query: 13 EYKYQVFLSFRGSDTRYGFTGNLYKALTDKGINTFIDKNGLQRGDEITPSLLKAIEESRI 72
++ Y VFLSFRG ++R FT +LY AL + GI F+D N LQRG++I+ SLLKAIE+SRI
Sbjct: 75 KWSYDVFLSFRGEESRRSFTSHLYTALKNAGIKVFMD-NELQRGEDISSSLLKAIEDSRI 251
Query: 73 FIPVFSINYASSSFCLDELVHIIHCYKTKGRLVLPVFFGVEPTVVRHRKGSYGEA 127
I +FS NY S +CLDEL II C +T G+ V+PVF+ V+P+ +R ++G+ GEA
Sbjct: 252 AIIIFSTNYTGSKWCLDELEKIIECQRTIGQEVMPVFYNVDPSDIRKQRGTVGEA 416
>CB828263
Length = 570
Score = 123 bits (308), Expect = 2e-28
Identities = 61/134 (45%), Positives = 96/134 (71%)
Frame = +2
Query: 53 LQRGDEITPSLLKAIEESRIFIPVFSINYASSSFCLDELVHIIHCYKTKGRLVLPVFFGV 112
LQRGDEI+ SLL+AIEE+++ + VFS NY +S +CLDELV I+ C +T+G++VLPVF+ +
Sbjct: 8 LQRGDEISSSLLRAIEEAKLSVIVFSKNYGNSKWCLDELVKILECKRTRGQIVLPVFYDI 187
Query: 113 EPTVVRHRKGSYGEALAEHEKRFQNDPKNMERLQGWKKALSQAANLSGYHDSPPGYEYKL 172
+P+ VR++ G+Y EA +H + ++++Q W++AL +AANLSG+ S E ++
Sbjct: 188 DPSHVRNQTGTYAEAFVKHGQ--------VDKVQKWREALREAANLSGWDCSVNRMESEV 343
Query: 173 IGKIVKYISNKISR 186
I KI K + K++R
Sbjct: 344 IEKIAKDVLEKLNR 385
>AV779547
Length = 556
Score = 121 bits (304), Expect = 5e-28
Identities = 68/142 (47%), Positives = 92/142 (63%)
Frame = +1
Query: 20 LSFRGSDTRYGFTGNLYKALTDKGINTFIDKNGLQRGDEITPSLLKAIEESRIFIPVFSI 79
+SFRG DTR FT +L AL KG TF D L++G I+ L++AIE S+I I VFS
Sbjct: 109 VSFRGEDTRNNFTDHLLGALYGKGFVTFKDDTMLRKGKNISTELIQAIEGSQILIVVFSK 288
Query: 80 NYASSSFCLDELVHIIHCYKTKGRLVLPVFFGVEPTVVRHRKGSYGEALAEHEKRFQNDP 139
YASS++CL EL I K + VLPV V P+ VR + G+YGEA +HE+RF+ D
Sbjct: 289 YYASSTWCLQELAKIADGIVGKRQTVLPVVCDVTPSEVRKQSGNYGEAFLKHEERFKED- 465
Query: 140 KNMERLQGWKKALSQAANLSGY 161
+E +Q W+KAL++ A+LSG+
Sbjct: 466 --LEMVQRWRKALAEVADLSGW 525
>TC19146 similar to UP|Q8S4X3 (Q8S4X3) TIR-similar-domain-containing protein
TSDC, partial (12%)
Length = 701
Score = 120 bits (302), Expect = 8e-28
Identities = 66/144 (45%), Positives = 90/144 (61%)
Frame = +1
Query: 35 LYKALTDKGINTFIDKNGLQRGDEITPSLLKAIEESRIFIPVFSINYASSSFCLDELVHI 94
LY AL +G TF+D GL G+EI SLL A E+SR+ I VFS NY SS+CLDELV I
Sbjct: 1 LYHALRREGFKTFMDDEGLVGGNEIAKSLLDASEKSRLSIIVFSENYGYSSWCLDELVKI 180
Query: 95 IHCYKTKGRLVLPVFFGVEPTVVRHRKGSYGEALAEHEKRFQNDPKNMERLQGWKKALSQ 154
+ C +TK +LV P+F+ VE + V ++ SY A+ HEK + D +++ W+ ALS
Sbjct: 181 VECMETKKQLVWPIFYKVEKSDVTSQENSYEHAMIGHEKNYGKDSDEVKK---WRSALSA 351
Query: 155 AANLSGYHDSPPGYEYKLIGKIVK 178
A L G++ YEY+ I KIV+
Sbjct: 352 MAKLEGHNVKENKYEYEFIKKIVE 423
>AV778571
Length = 452
Score = 113 bits (283), Expect = 1e-25
Identities = 59/112 (52%), Positives = 74/112 (65%)
Frame = +3
Query: 648 CEYLTHIPDVSGLSNLEKLSFTCCDNLITIHNSIGHLNKLEWLSAYGCRKLEHFRPLGLA 707
CE +T IPD+SGL NLEKLSF +NLI IH S+G LNKL L GC K+ F P+ LA
Sbjct: 45 CESITQIPDLSGLPNLEKLSFVYSENLIKIHESVGFLNKLRILDIEGCCKIRTFPPMKLA 224
Query: 708 SLKKLILYECECLDNFPELLCKMAHIKEIDISNTSIGELPFSFQNLSELHEL 759
SL++L L C L++FPE+L KM +I I + +T I ELP S NL+ L L
Sbjct: 225 SLEELYLSHCSSLESFPEILAKMENITLIGVYHTPIKELPSSIGNLTRLRRL 380
Score = 28.9 bits (63), Expect = 4.4
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +3
Query: 636 KFQNMKVLTLDYCEYLTHIPDVSGLSNLEKLSFTCCDN--LITIHNSIGHLNKLEWLSAY 693
K +++ L L +C L P++ L+ +E ++ + + + +SIG+L +L L +
Sbjct: 216 KLASLEELYLSHCSSLESFPEI--LAKMENITLIGVYHTPIKELPSSIGNLTRLRRLELH 389
Query: 694 GCRKLEHFRPLGLA 707
GC L+ P G+A
Sbjct: 390 GCGMLQ--LPSGMA 425
>AV409408
Length = 430
Score = 112 bits (281), Expect = 2e-25
Identities = 65/150 (43%), Positives = 94/150 (62%)
Frame = +2
Query: 389 GLPLVLEVVGSNLFGKSIEDWKHTLDGYDRIPNKEIQKILKVSYDALEEEEQSVFLDIAC 448
GLPL LEV+GS L G+S+ DW+ L ++P+ +I L++SYD LE+E +++FLDIAC
Sbjct: 5 GLPLALEVLGSFLCGRSLSDWEDALIKIKKVPHDDILNKLRISYDMLEDEHKTLFLDIAC 184
Query: 449 CFKGYQWKEFEDILCAHYDHCITHHLGVLAGKSLVKISTYYPSGSINDVRLHDLIKDMGK 508
FKG+ + +L + H T + VL KSL+ G + + +HDL+++MGK
Sbjct: 185 FFKGWYKHKVIQLLGSCGLH-PTVGINVLIEKSLLTF-----DGRV--IGMHDLLEEMGK 340
Query: 509 EVVRQESPKEPGERSRLWRQEDIIHVLKEN 538
V ESP +PG RSRLW EDI VL++N
Sbjct: 341 TEVFLESPNDPGRRSRLWSLEDIDQVLRKN 430
>BP045440
Length = 535
Score = 110 bits (274), Expect = 1e-24
Identities = 67/156 (42%), Positives = 87/156 (54%), Gaps = 2/156 (1%)
Frame = -3
Query: 15 KYQVFLSFRGSDTRYGFTGNLYKALTDKGINTFIDKNGLQRGDEITPSLLKAIEESRIFI 74
+YQ+F+SFRG DTR FT LY+ L +G TF D L+ G I LL IEESR I
Sbjct: 530 RYQIFISFRGMDTRDDFTKPLYQGLCREGFVTFKDDESLEGGSPI-EKLLDDIEESRFAI 354
Query: 75 PVFSINYASSSFCLDELVHIIHCYKTKGR--LVLPVFFGVEPTVVRHRKGSYGEALAEHE 132
+ S NYA S +CL EL I+ C +G+ LVLP V PT VRH Y +A+A+HE
Sbjct: 353 IILSKNYAESEWCLKELSKILECKDQEGKNQLVLPSSTEVTPTEVRHVINRYADAMAKHE 174
Query: 133 KRFQNDPKNMERLQGWKKALSQAANLSGYHDSPPGY 168
K + + + +Q WKKAL L+G+ Y
Sbjct: 173 K----NGIDSKTIQAWKKALFDVCTLTGFEKPSDWY 78
>BP065014
Length = 498
Score = 101 bits (252), Expect = 5e-22
Identities = 61/126 (48%), Positives = 76/126 (59%)
Frame = -2
Query: 47 FIDKNGLQRGDEITPSLLKAIEESRIFIPVFSINYASSSFCLDELVHIIHCYKTKGRLVL 106
F D L+ G I LL AIEESR+ I V S N+A S +CL ELV I+ C K K LVL
Sbjct: 497 FKDDLSLEDGAPIE-ELLGAIEESRVAIVVLSENFADSKWCLKELVKILDCRKKKKPLVL 321
Query: 107 PVFFGVEPTVVRHRKGSYGEALAEHEKRFQNDPKNMERLQGWKKALSQAANLSGYHDSPP 166
P+F+ VEPT +RH KG YGEA+AEHEK+ D + + W +ALS + L G +
Sbjct: 320 PIFYKVEPTNIRHLKGRYGEAMAEHEKKLGKDSQTVRE---WTQALSDISYLKG--EPYK 156
Query: 167 GYEYKL 172
GY KL
Sbjct: 155 GYVVKL 138
>BP064315
Length = 350
Score = 93.2 bits (230), Expect = 2e-19
Identities = 49/113 (43%), Positives = 67/113 (58%), Gaps = 4/113 (3%)
Frame = +1
Query: 276 GLEIKLDHVSEGIPVIKERLCRKKILLILDDVDNLKQLHALAGGLDWFGCGSRVIITTRN 335
G E + G IK RL K++LL+LDDVD +KQL ALAGG DWFG GSR+IITTR+
Sbjct: 10 GTETMMGSTFRGDFEIKRRLSNKRVLLVLDDVDKIKQLQALAGGGDWFGSGSRIIITTRD 189
Query: 336 KDLLSSHGIEST----HAVEGLNETEALELLRWMAFKSDKVPSGYEDILNRAV 384
+L H ++ + +E LN+ ++LEL W AF +E + + AV
Sbjct: 190 TTMLDKHKMDDVIMKKYKMEELNDHDSLELFCWHAFNMSTPAENFEGVSSHAV 348
>AV410283
Length = 426
Score = 91.3 bits (225), Expect = 7e-19
Identities = 51/124 (41%), Positives = 72/124 (57%)
Frame = +1
Query: 281 LDHVSEGIPVIKERLCRKKILLILDDVDNLKQLHALAGGLDWFGCGSRVIITTRNKDLLS 340
++ V++G+ IK L K+LLILDDVD ++QL L G +WF GSRV+ITTRN +L
Sbjct: 40 VNDVNDGVSAIKRVLQGNKVLLILDDVDEIQQLDFLMGNREWFHKGSRVVITTRNTQVLP 219
Query: 341 SHGIESTHAVEGLNETEALELLRWMAFKSDKVPSGYEDILNRAVAYAFGLPLVLEVVGSN 400
++ + V L + AL L A + K G+ ++ + V GLPL LEV+GS
Sbjct: 220 ESYVDMFYEVRELELSAALALFCHHAMRRKKPAEGFSNLSKQIVKKTGGLPLALEVIGSF 399
Query: 401 LFGK 404
LF K
Sbjct: 400 LFDK 411
>AV427118
Length = 317
Score = 80.1 bits (196), Expect = 2e-15
Identities = 46/111 (41%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Frame = +3
Query: 457 EFEDILCAHYDHCITHHLGVLAGKSLVKISTYYPSGSINDVRLHDLIKDMGKEVVRQESP 516
E + IL AHY C+T ++ L K L+ IS S ++ LH+ +++MGKE+VR++S
Sbjct: 3 EVQHILRAHYRECVTDYISALVSKFLINIS------SSGELTLHEWMRNMGKEIVRRKSS 164
Query: 517 KEPGERSRLWRQEDIIHVLKENTGTSKIEMIYMNLHSM-ESVIDKKGKAFK 566
+ P SRLW +DI VL++ TGT KI I ++L S E I GK FK
Sbjct: 165 RMPCVSSRLWILQDIRQVLEDCTGTHKIRTICLDLSSTEEGTISWDGKGFK 317
>TC18755 similar to UP|AAN85378 (AAN85378) Resistance protein (Fragment),
complete
Length = 880
Score = 75.9 bits (185), Expect = 3e-14
Identities = 62/215 (28%), Positives = 104/215 (47%), Gaps = 14/215 (6%)
Frame = +3
Query: 219 MVGIYGIGGLGKSTLARQIYN--FVADQFEG--------SCFLHDVRENSAQNNLKYLQE 268
++ + G+GG+GK+TL +Q+Y+ V F SC + ++ + A+ ++
Sbjct: 264 VISVTGMGGMGKTTLVKQVYDDPVVIKHFRACAWITVSQSCEIGELLRDLARQLFSEIRR 443
Query: 269 KLLLKTTGLE-IKLDHVSEGIPVIKERLCRKKILLILDDVDNLKQLHALAGGLDWFGCGS 327
+ L GLE ++ D + +IK+ L R++ L++ DDV ++++ A+ L CGS
Sbjct: 444 PVPL---GLENMRCDRLKM---IIKDLLQRRRYLVVFDDVWHVREWEAVKYALPDNNCGS 605
Query: 328 RVIITTRNKDLLSSHGIES---THAVEGLNETEALELLRWMAFKSDKVPSGYEDILNRAV 384
R++ITTR DL + ES + ++ L E EA EL F D PS I +
Sbjct: 606 RIMITTRRSDLAFTSSTESKGKVYNLQPLKEDEAWELFCRKTFHGDSCPSHLIGICTYIL 785
Query: 385 AYAFGLPLVLEVVGSNLFGKSIEDWKHTLDGYDRI 419
GLPL + + L K K +D +D I
Sbjct: 786 RKCEGLPLAIVAISGVLATKD----KRRIDEWDMI 878
>BP065724
Length = 495
Score = 74.3 bits (181), Expect = 9e-14
Identities = 33/82 (40%), Positives = 56/82 (68%)
Frame = -1
Query: 81 YASSSFCLDELVHIIHCYKTKGRLVLPVFFGVEPTVVRHRKGSYGEALAEHEKRFQNDPK 140
YA SS+CL+E+V I+ C + +LV P+F+ VEP+ VRH++ SY +A+ + E R+ K
Sbjct: 495 YADSSWCLEEVVKILECKQKNDQLVWPIFYKVEPSDVRHQRNSYEKAMIKQETRY---GK 325
Query: 141 NMERLQGWKKALSQAANLSGYH 162
+ E+++ W+ +LSQ +L +H
Sbjct: 324 DSEKVKKWRSSLSQVCDLKAFH 259
>AI967395
Length = 205
Score = 69.7 bits (169), Expect = 2e-12
Identities = 33/67 (49%), Positives = 49/67 (72%)
Frame = +3
Query: 67 IEESRIFIPVFSINYASSSFCLDELVHIIHCYKTKGRLVLPVFFGVEPTVVRHRKGSYGE 126
I+ESR+ I VFS +YA S+ CL+ELV+I+ +LV PV++GVE +RH++G YGE
Sbjct: 3 IQESRLIIVVFSEHYAVSASCLNELVNIVDVMIMNNQLVWPVYYGVEAPEIRHQRGRYGE 182
Query: 127 ALAEHEK 133
A+A+ E+
Sbjct: 183 AMAKFEE 203
>TC12516 similar to UP|Q9M5V7 (Q9M5V7) Disease resistance-like protein
(Fragment), partial (36%)
Length = 859
Score = 69.3 bits (168), Expect = 3e-12
Identities = 36/104 (34%), Positives = 64/104 (60%)
Frame = +3
Query: 196 VGLQSRVQQVKSLLDEGSDDGVHMVGIYGIGGLGKSTLARQIYNFVADQFEGSCFLHDVR 255
+G+ + ++SLL + S D V ++GI+G+GG+GK+T+A +I+N Q+EG CFL V+
Sbjct: 549 IGVDKSIAHLESLLCQESKD-VRVIGIWGMGGIGKTTIAEEIFNRRHSQYEGICFLSKVK 725
Query: 256 ENSAQNNLKYLQEKLLLKTTGLEIKLDHVSEGIPVIKERLCRKK 299
+ ++ ++ L+EKL ++K+D + IK R+ R K
Sbjct: 726 DEL*KHGMQSLREKLFSTLLAQDVKIDTPNGMADDIKRRIGRMK 857
>TC9932 weakly similar to UP|Q93YA7 (Q93YA7) Resistance gene-like, partial
(5%)
Length = 689
Score = 66.2 bits (160), Expect = 2e-11
Identities = 29/62 (46%), Positives = 44/62 (70%)
Frame = -2
Query: 6 SSTSISYEYKYQVFLSFRGSDTRYGFTGNLYKALTDKGINTFIDKNGLQRGDEITPSLLK 65
SS+S ++++ Y VF++FRG DTR+ F +LY AL++ G+N F+D L+RG E+ P L K
Sbjct: 232 SSSSSNHQWIYDVFINFRGKDTRHSFVSHLYTALSNAGVNVFLDDENLERGLELEPELQK 53
Query: 66 AI 67
I
Sbjct: 52 LI 47
>AV774918
Length = 541
Score = 65.9 bits (159), Expect = 3e-11
Identities = 33/72 (45%), Positives = 46/72 (63%)
Frame = -1
Query: 770 IVFSNMTKLSLSFFNLSDECLPIVLKWCVNMTHLDLSFSNFKILPECLRECHHLVEINVM 829
++ SN+ LS +LSDE L +VL + N+ LDLS S+F PEC++ECH L + V
Sbjct: 385 LLSSNIESLSFIRCHLSDEFLLLVLPFFANLKELDLSHSDFTFAPECIKECHSLWWLQVD 206
Query: 830 CCESLEEIRGIP 841
C+ L EI+GIP
Sbjct: 205 RCDELREIKGIP 170
>TC20188 weakly similar to UP|Q8S4X3 (Q8S4X3) TIR-similar-domain-containing
protein TSDC, partial (11%)
Length = 494
Score = 61.2 bits (147), Expect = 8e-10
Identities = 33/76 (43%), Positives = 46/76 (60%)
Frame = +1
Query: 103 RLVLPVFFGVEPTVVRHRKGSYGEALAEHEKRFQNDPKNMERLQGWKKALSQAANLSGYH 162
+LV P+F+ + + V ++ SYG A+ HE F D E++Q WK ALS+ A L G H
Sbjct: 4 QLVWPIFYEISXSDVSNQTKSYGHAMLAHENSFGKDS---EKVQKWKSALSEMAFLQGEH 174
Query: 163 DSPPGYEYKLIGKIVK 178
+ YEYKLI KIV+
Sbjct: 175 ITENEYEYKLIQKIVE 222
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.320 0.137 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,656,271
Number of Sequences: 28460
Number of extensions: 301072
Number of successful extensions: 1617
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 1581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1599
length of query: 1040
length of database: 4,897,600
effective HSP length: 100
effective length of query: 940
effective length of database: 2,051,600
effective search space: 1928504000
effective search space used: 1928504000
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Medicago: description of AC126790.9