BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126790.7 - phase: 0 /pseudo
(625 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC13186 weakly similar to UP|Q8W2C0 (Q8W2C0) Functional candidat... 135 3e-32
AV406755 117 4e-27
AV779547 108 3e-24
TC19146 similar to UP|Q8S4X3 (Q8S4X3) TIR-similar-domain-contain... 100 5e-22
CB828263 97 8e-21
BP045440 97 1e-20
BP065014 87 6e-18
TC12566 similar to UP|Q84XI1 (Q84XI1) RCa1 (Fragment), partial (... 82 2e-16
AV410283 80 7e-16
BP064315 77 1e-14
AV409408 74 5e-14
TC12516 similar to UP|Q9M5V7 (Q9M5V7) Disease resistance-like pr... 72 2e-13
TC18755 similar to UP|AAN85378 (AAN85378) Resistance protein (Fr... 67 7e-12
TC9932 weakly similar to UP|Q93YA7 (Q93YA7) Resistance gene-like... 66 2e-11
BP057316 62 2e-10
AI967395 62 2e-10
TC12663 weakly similar to UP|Q84ZV8 (Q84ZV8) R 3 protein, partia... 51 5e-10
BP065724 61 6e-10
TC12592 49 3e-06
AV408271 44 8e-05
>TC13186 weakly similar to UP|Q8W2C0 (Q8W2C0) Functional candidate
resistance protein KR1, partial (6%)
Length = 586
Score = 135 bits (339), Expect = 3e-32
Identities = 75/142 (52%), Positives = 98/142 (68%), Gaps = 1/142 (0%)
Frame = +1
Query: 21 FNFDVFISFRGTDTRFGFTGNLYKALSDKGIHTFIDDKELPTGDEITPSLR-KSIEESRI 79
F +DVFIS +DTRFGF+G+LY ALSDKGI TFIDD LP D+I ++ K+IE SRI
Sbjct: 97 FIYDVFISLITSDTRFGFSGDLYTALSDKGILTFIDDG-LPRPDDIMSTVNSKAIESSRI 273
Query: 80 AIIIFSKNYATSSFCLDELVHIIHCFREKVTKVIPVFYGTEPSHVRKLEDSYGEALAKHE 139
AI++ S+NYA+SSFCLDEL++I+ EK + PVFY EPS VR + +G+A A HE
Sbjct: 274 AIVVISENYASSSFCLDELMYILKRREEKGLLIWPVFYQVEPSDVRYQKGGFGKAFASHE 453
Query: 140 VEFQNDMENMERLLKWKEALHQ 161
F +D ++ KW+ AL Q
Sbjct: 454 ERFGSD---SAKVRKWRNALKQ 510
>AV406755
Length = 425
Score = 117 bits (294), Expect = 4e-27
Identities = 61/117 (52%), Positives = 82/117 (69%)
Frame = +3
Query: 21 FNFDVFISFRGTDTRFGFTGNLYKALSDKGIHTFIDDKELPTGDEITPSLRKSIEESRIA 80
+++DVF+SFRG ++R FT +LY AL + GI F+D+ EL G++I+ SL K+IE+SRIA
Sbjct: 78 WSYDVFLSFRGEESRRSFTSHLYTALKNAGIKVFMDN-ELQRGEDISSSLLKAIEDSRIA 254
Query: 81 IIIFSKNYATSSFCLDELVHIIHCFREKVTKVIPVFYGTEPSHVRKLEDSYGEALAK 137
IIIFS NY S +CLDEL II C R +V+PVFY +PS +RK + GEA K
Sbjct: 255 IIIFSTNYTGSKWCLDELEKIIECQRTIGQEVMPVFYNVDPSDIRKQRGTVGEAFRK 425
>AV779547
Length = 556
Score = 108 bits (269), Expect = 3e-24
Identities = 63/142 (44%), Positives = 82/142 (57%)
Frame = +1
Query: 18 SYDFNFDVFISFRGTDTRFGFTGNLYKALSDKGIHTFIDDKELPTGDEITPSLRKSIEES 77
S D +SFRG DTR FT +L AL KG TF DD L G I+ L ++IE S
Sbjct: 82 SDDMEI*CVVSFRGEDTRNNFTDHLLGALYGKGFVTFKDDTMLRKGKNISTELIQAIEGS 261
Query: 78 RIAIIIFSKNYATSSFCLDELVHIIHCFREKVTKVIPVFYGTEPSHVRKLEDSYGEALAK 137
+I I++FSK YA+S++CL EL I K V+PV PS VRK +YGEA K
Sbjct: 262 QILIVVFSKYYASSTWCLQELAKIADGIVGKRQTVLPVVCDVTPSEVRKQSGNYGEAFLK 441
Query: 138 HEVEFQNDMENMERLLKWKEAL 159
HE F+ D+E ++R W++AL
Sbjct: 442 HEERFKEDLEMVQR---WRKAL 498
>TC19146 similar to UP|Q8S4X3 (Q8S4X3) TIR-similar-domain-containing protein
TSDC, partial (12%)
Length = 701
Score = 100 bits (250), Expect = 5e-22
Identities = 53/118 (44%), Positives = 73/118 (60%)
Frame = +1
Query: 42 LYKALSDKGIHTFIDDKELPTGDEITPSLRKSIEESRIAIIIFSKNYATSSFCLDELVHI 101
LY AL +G TF+DD+ L G+EI SL + E+SR++II+FS+NY SS+CLDELV I
Sbjct: 1 LYHALRREGFKTFMDDEGLVGGNEIAKSLLDASEKSRLSIIVFSENYGYSSWCLDELVKI 180
Query: 102 IHCFREKVTKVIPVFYGTEPSHVRKLEDSYGEALAKHEVEFQNDMENMERLLKWKEAL 159
+ C K V P+FY E S V E+SY A+ HE + D + ++ KW+ AL
Sbjct: 181 VECMETKKQLVWPIFYKVEKSDVTSQENSYEHAMIGHEKNYGKDSDEVK---KWRSAL 345
>CB828263
Length = 570
Score = 97.1 bits (240), Expect = 8e-21
Identities = 51/123 (41%), Positives = 74/123 (59%), Gaps = 6/123 (4%)
Frame = +2
Query: 59 ELPTGDEITPSLRKSIEESRIAIIIFSKNYATSSFCLDELVHIIHCFREKVTKVIPVFYG 118
+L GDEI+ SL ++IEE+++++I+FSKNY S +CLDELV I+ C R + V+PVFY
Sbjct: 5 DLQRGDEISSSLLRAIEEAKLSVIVFSKNYGNSKWCLDELVKILECKRTRGQIVLPVFYD 184
Query: 119 TEPSHVRKLEDSYGEALAKHEVEFQNDMENMERLLKWKEALHQ---FHSW---INRCHLH 172
+PSHVR +Y EA KH ++++ KW+EAL + W +NR
Sbjct: 185 IDPSHVRNQTGTYAEAFVKH--------GQVDKVQKWREALREAANLSGWDCSVNRMESE 340
Query: 173 VAE 175
V E
Sbjct: 341 VIE 349
>BP045440
Length = 535
Score = 96.7 bits (239), Expect = 1e-20
Identities = 61/139 (43%), Positives = 82/139 (58%), Gaps = 2/139 (1%)
Frame = -3
Query: 23 FDVFISFRGTDTRFGFTGNLYKALSDKGIHTFIDDKELPTGDEITPSLRKSIEESRIAII 82
+ +FISFRG DTR FT LY+ L +G TF DD+ L G I L IEESR AII
Sbjct: 527 YQIFISFRGMDTRDDFTKPLYQGLCREGFVTFKDDESLEGGSPIE-KLLDDIEESRFAII 351
Query: 83 IFSKNYATSSFCLDELVHIIHCFRE--KVTKVIPVFYGTEPSHVRKLEDSYGEALAKHEV 140
I SKNYA S +CL EL I+ C + K V+P P+ VR + + Y +A+AKHE
Sbjct: 350 ILSKNYAESEWCLKELSKILECKDQEGKNQLVLPSSTEVTPTEVRHVINRYADAMAKHE- 174
Query: 141 EFQNDMENMERLLKWKEAL 159
+N +++ + + WK+AL
Sbjct: 173 --KNGIDS-KTIQAWKKAL 126
>BP065014
Length = 498
Score = 87.4 bits (215), Expect = 6e-18
Identities = 45/106 (42%), Positives = 68/106 (63%)
Frame = -2
Query: 54 FIDDKELPTGDEITPSLRKSIEESRIAIIIFSKNYATSSFCLDELVHIIHCFREKVTKVI 113
F DD L G I L +IEESR+AI++ S+N+A S +CL ELV I+ C ++K V+
Sbjct: 497 FKDDLSLEDGAPIE-ELLGAIEESRVAIVVLSENFADSKWCLKELVKILDCRKKKKPLVL 321
Query: 114 PVFYGTEPSHVRKLEDSYGEALAKHEVEFQNDMENMERLLKWKEAL 159
P+FY EP+++R L+ YGEA+A+HE + D + + +W +AL
Sbjct: 320 PIFYKVEPTNIRHLKGRYGEAMAEHEKKLGKDSQTVR---EWTQAL 192
>TC12566 similar to UP|Q84XI1 (Q84XI1) RCa1 (Fragment), partial (28%)
Length = 918
Score = 82.4 bits (202), Expect = 2e-16
Identities = 45/107 (42%), Positives = 68/107 (63%), Gaps = 3/107 (2%)
Frame = +1
Query: 328 KIYEADSLNKEESLELLRKMTFK-NDSSYDYI--LNRAVEYASGLPLALKVVGSNLFGKS 384
+IYE ++ E+SL+L FK ND YI + + YA G+PLALKV+G L+G+
Sbjct: 7 EIYEVKEMSFEDSLQLFSLNAFKRNDPLETYIDLSKKLLSYAKGIPLALKVLGLFLYGRE 186
Query: 385 IADCESTLDKYERIPPEDIQKILKVSFDTLEEEQQSVFLDIACCFKG 431
ES L K E++P +I +LK+S+D L+++Q+ +FLDIAC + G
Sbjct: 187 RKAWESQLVKLEKLPDPEIINVLKLSYDGLDDDQKDIFLDIACFYLG 327
>AV410283
Length = 426
Score = 80.5 bits (197), Expect = 7e-16
Identities = 49/120 (40%), Positives = 67/120 (55%), Gaps = 3/120 (2%)
Frame = +1
Query: 267 NEGIEIIKQRLCRKKVLLILDDVDKPNQLEKLVGEPGWFGQGSRVIITTRDRYLLSCHGI 326
N+G+ IK+ L KVLLILDDVD+ QL+ L+G WF +GSRV+ITTR+ +L +
Sbjct: 52 NDGVSAIKRVLQGNKVLLILDDVDEIQQLDFLMGNREWFHKGSRVVITTRNTQVLPESYV 231
Query: 327 TKIYEADSLNKEESLELLRKMTF---KNDSSYDYILNRAVEYASGLPLALKVVGSNLFGK 383
YE L +L L K + + + V+ GLPLAL+V+GS LF K
Sbjct: 232 DMFYEVRELELSAALALFCHHAMRRKKPAEGFSNLSKQIVKKTGGLPLALEVIGSFLFDK 411
>BP064315
Length = 350
Score = 76.6 bits (187), Expect = 1e-14
Identities = 44/90 (48%), Positives = 55/90 (60%), Gaps = 4/90 (4%)
Frame = +1
Query: 258 GYDTPLEHDNEGIEIIKQRLCRKKVLLILDDVDKPNQLEKLVGEPGWFGQGSRVIITTRD 317
G +T + G IK+RL K+VLL+LDDVDK QL+ L G WFG GSR+IITTRD
Sbjct: 10 GTETMMGSTFRGDFEIKRRLSNKRVLLVLDDVDKIKQLQALAGGGDWFGSGSRIIITTRD 189
Query: 318 RYLLSCHG----ITKIYEADSLNKEESLEL 343
+L H I K Y+ + LN +SLEL
Sbjct: 190 TTMLDKHKMDDVIMKKYKMEELNDHDSLEL 279
>AV409408
Length = 430
Score = 74.3 bits (181), Expect = 5e-14
Identities = 36/69 (52%), Positives = 52/69 (75%)
Frame = +2
Query: 368 GLPLALKVVGSNLFGKSIADCESTLDKYERIPPEDIQKILKVSFDTLEEEQQSVFLDIAC 427
GLPLAL+V+GS L G+S++D E L K +++P +DI L++S+D LE+E +++FLDIAC
Sbjct: 5 GLPLALEVLGSFLCGRSLSDWEDALIKIKKVPHDDILNKLRISYDMLEDEHKTLFLDIAC 184
Query: 428 CFKGCDWQK 436
FKG W K
Sbjct: 185 FFKG--WYK 205
>TC12516 similar to UP|Q9M5V7 (Q9M5V7) Disease resistance-like protein
(Fragment), partial (36%)
Length = 859
Score = 72.4 bits (176), Expect = 2e-13
Identities = 40/105 (38%), Positives = 64/105 (60%)
Frame = +3
Query: 177 LVGLESRISEVNSLLDLGCTDGVYIIGILGTGGLGKTTLAEAVYNSIVNQFECRCFLYNV 236
L+G++ I+ + SLL D V +IGI G GG+GKTT+AE ++N +Q+E CFL V
Sbjct: 546 LIGVDKSIAHLESLLCQESKD-VRVIGIWGMGGIGKTTIAEEIFNRRHSQYEGICFLSKV 722
Query: 237 RENSFKHSLKYLQEQLLSKSIGYDTPLEHDNEGIEIIKQRLCRKK 281
++ KH ++ L+E+L S + D ++ N + IK+R+ R K
Sbjct: 723 KDEL*KHGMQSLREKLFSTLLAQDVKIDTPNGMADDIKRRIGRMK 857
>TC18755 similar to UP|AAN85378 (AAN85378) Resistance protein (Fragment),
complete
Length = 880
Score = 67.4 bits (163), Expect = 7e-12
Identities = 62/219 (28%), Positives = 100/219 (45%), Gaps = 12/219 (5%)
Frame = +3
Query: 177 LVGLESRISEVNSLLDLGCTDGVYIIGILGTGGLGKTTLAEAVYNS--IVNQFECRCFLY 234
LVG++ R ++ L C +I + G GG+GKTTL + VY+ ++ F ++
Sbjct: 195 LVGIDRRKKKLMGCLIKPCPVRK-VISVTGMGGMGKTTLVKQVYDDPVVIKHFRACAWIT 371
Query: 235 NVRENSFKHSLKYLQEQLLSKSIGYDTPLEHDNEGIE----IIKQRLCRKKVLLILDDVD 290
+ L+ L QL S+ I PL +N + IIK L R++ L++ DDV
Sbjct: 372 VSQSCEIGELLRDLARQLFSE-IRRPVPLGLENMRCDRLKMIIKDLLQRRRYLVVFDDVW 548
Query: 291 KPNQLEKLVGEPGWFGQGSRVIITTRD---RYLLSCHGITKIYEADSLNKEESLELLRKM 347
+ E + GSR++ITTR + S K+Y L ++E+ EL +
Sbjct: 549 HVREWEAVKYALPDNNCGSRIMITTRRSDLAFTSSTESKGKVYNLQPLKEDEAWELFCRK 728
Query: 348 TFKNDSSYDYIL---NRAVEYASGLPLALKVVGSNLFGK 383
TF DS +++ + GLPLA+ + L K
Sbjct: 729 TFHGDSCPSHLIGICTYILRKCEGLPLAIVAISGVLATK 845
>TC9932 weakly similar to UP|Q93YA7 (Q93YA7) Resistance gene-like, partial
(5%)
Length = 689
Score = 65.9 bits (159), Expect = 2e-11
Identities = 31/62 (50%), Positives = 44/62 (70%)
Frame = -2
Query: 13 SSSSLSYDFNFDVFISFRGTDTRFGFTGNLYKALSDKGIHTFIDDKELPTGDEITPSLRK 72
SSSS ++ + +DVFI+FRG DTR F +LY ALS+ G++ F+DD+ L G E+ P L+K
Sbjct: 232 SSSSSNHQWIYDVFINFRGKDTRHSFVSHLYTALSNAGVNVFLDDENLERGLELEPELQK 53
Query: 73 SI 74
I
Sbjct: 52 LI 47
>BP057316
Length = 494
Score = 62.4 bits (150), Expect = 2e-10
Identities = 53/161 (32%), Positives = 85/161 (51%), Gaps = 14/161 (8%)
Frame = +2
Query: 276 RLCRKKVLLILDDV-----DKPNQLEKLVGEPGWFGQGSRVIITTRDRYLLSCHGITKIY 330
+L KK LL+LDD K QL K + QGS+V++TTR + + G+ I+
Sbjct: 2 KLSGKKYLLVLDDTWNESYQKWTQLRKYLM---CGAQGSKVLVTTRSQIVAQTMGVQVIH 172
Query: 331 EADSLNKEESLELLRKMTFKNDS-----SYDYILNRAVEYASGLPLALKVVGSNLFGKS- 384
+SL EES LL+K+TF++D+ S + I + E G+PLA++ +G L KS
Sbjct: 173 VLNSLTLEESWGLLKKITFEDDATQVSQSLESIGEKIAEKCRGVPLAIRTLGGLLQSKSE 352
Query: 385 IADCESTL--DKYERIPPED-IQKILKVSFDTLEEEQQSVF 422
++ + L D ++ ED I +LK+S+ L + + F
Sbjct: 353 ESEWMNVLQGDFWKLCEDEDSIIPVLKLSYQNLSPQIRQCF 475
>AI967395
Length = 205
Score = 62.4 bits (150), Expect = 2e-10
Identities = 30/66 (45%), Positives = 43/66 (64%)
Frame = +3
Query: 74 IEESRIAIIIFSKNYATSSFCLDELVHIIHCFREKVTKVIPVFYGTEPSHVRKLEDSYGE 133
I+ESR+ I++FS++YA S+ CL+ELV+I+ V PV+YG E +R YGE
Sbjct: 3 IQESRLIIVVFSEHYAVSASCLNELVNIVDVMIMNNQLVWPVYYGVEAPEIRHQRGRYGE 182
Query: 134 ALAKHE 139
A+AK E
Sbjct: 183 AMAKFE 200
>TC12663 weakly similar to UP|Q84ZV8 (Q84ZV8) R 3 protein, partial (4%)
Length = 494
Score = 51.2 bits (121), Expect(2) = 5e-10
Identities = 24/43 (55%), Positives = 33/43 (75%)
Frame = +3
Query: 18 SYDFNFDVFISFRGTDTRFGFTGNLYKALSDKGIHTFIDDKEL 60
S+ F+VF++FRG+DT GF L K+L DKGI+TFI+D+EL
Sbjct: 12 SHVLTFNVFLNFRGSDTCHGFISFLCKSLLDKGIYTFINDEEL 140
Score = 29.6 bits (65), Expect(2) = 5e-10
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +2
Query: 64 DEITPSLRKSIEESRIAI 81
DEITPSL K+IE +RIAI
Sbjct: 149 DEITPSLVKAIERTRIAI 202
>BP065724
Length = 495
Score = 60.8 bits (146), Expect = 6e-10
Identities = 30/74 (40%), Positives = 45/74 (60%)
Frame = -1
Query: 88 YATSSFCLDELVHIIHCFREKVTKVIPVFYGTEPSHVRKLEDSYGEALAKHEVEFQNDME 147
YA SS+CL+E+V I+ C ++ V P+FY EPS VR +SY +A+ K E + D E
Sbjct: 495 YADSSWCLEEVVKILECKQKNDQLVWPIFYKVEPSDVRHQRNSYEKAMIKQETRYGKDSE 316
Query: 148 NMERLLKWKEALHQ 161
++ KW+ +L Q
Sbjct: 315 KVK---KWRSSLSQ 283
>TC12592
Length = 534
Score = 48.5 bits (114), Expect = 3e-06
Identities = 28/86 (32%), Positives = 42/86 (48%)
Frame = +3
Query: 112 VIPVFYGTEPSHVRKLEDSYGEALAKHEVEFQNDMENMERLLKWKEALHQFHSWINRCHL 171
V+PVFYG EP+ +R L+ +GEA+A+ E +F D + +WK+AL
Sbjct: 9 VLPVFYGVEPTDIRNLKGKFGEAMAEIENKFGKDSNTIH---EWKQALRDI--------- 152
Query: 172 HVAEYLVGLESRISEVNSLLDLGCTD 197
YL G +S +N D+ D
Sbjct: 153 ---SYLKGEPCHVSNLNGEQDIRIRD 221
>AV408271
Length = 409
Score = 43.9 bits (102), Expect = 8e-05
Identities = 23/44 (52%), Positives = 28/44 (63%)
Frame = +1
Query: 23 FDVFISFRGTDTRFGFTGNLYKALSDKGIHTFIDDKELPTGDEI 66
+DVF+SFRG D R GF +L A K I+ F+DDK L G EI
Sbjct: 280 YDVFVSFRGEDIRDGFLSHLADAFRQKKINAFMDDK-LKRGQEI 408
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.331 0.145 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,136,106
Number of Sequences: 28460
Number of extensions: 154548
Number of successful extensions: 991
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of query: 625
length of database: 4,897,600
effective HSP length: 96
effective length of query: 529
effective length of database: 2,165,440
effective search space: 1145517760
effective search space used: 1145517760
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 58 (26.9 bits)
Medicago: description of AC126790.7