BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126790.12 - phase: 1 /pseudo/partial
(785 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV778571 112 3e-25
CB829528 44 8e-05
AV774918 42 4e-04
BP057104 40 0.002
BP043329 39 0.004
TC14265 weakly similar to UP|AAN62760 (AAN62760) Disease resista... 38 0.007
AW428699 36 0.027
AV427118 35 0.035
TC10205 weakly similar to UP|Q8RL77 (Q8RL77) HpaG, partial (10%) 31 0.67
TC11433 similar to UP|AAR99871 (AAR99871) Strubbelig receptor fa... 29 2.5
BP055604 28 4.3
BP034890 28 5.7
TC9271 weakly similar to UP|Q9SFG3 (Q9SFG3) F2O10.5 protein (At3... 27 9.6
BP054637 27 9.6
TC16915 weakly similar to UP|Q9SDA8 (Q9SDA8) AT2G17020 protein (... 27 9.6
>AV778571
Length = 452
Score = 112 bits (279), Expect = 3e-25
Identities = 61/111 (54%), Positives = 74/111 (65%), Gaps = 1/111 (0%)
Frame = +3
Query: 506 LSNLEKLSFEYCDNLITIHNSIGHLNKLERLSAFGCREFKRFPPLGLASLKELNLRYCES 565
L NLEKLSF Y +NLI IH S+G LNKL L GC + + FPP+ LASL+EL L +C S
Sbjct: 81 LPNLEKLSFVYSENLIKIHESVGFLNKLRILDIEGCCKIRTFPPMKLASLEELYLSHCSS 260
Query: 566 LDSFPELLCKMTNIDNIWLQHTSIGELPFSFQNLSELDELSVVN-GMLRFP 615
L+SFPE+L KM NI I + HT I ELP S NL+ L L + GML+ P
Sbjct: 261 LESFPEILAKMENITLIGVYHTPIKELPSSIGNLTRLRRLELHGCGMLQLP 413
>CB829528
Length = 188
Score = 44.3 bits (103), Expect = 8e-05
Identities = 23/49 (46%), Positives = 30/49 (60%), Gaps = 1/49 (2%)
Frame = +2
Query: 509 LEKLSFEYCDNLITIHNSIGHLNKLERLSAFGCREFKRFPP-LGLASLK 556
L LS + C +L+TIH S+G L L LSA GC + K F P + L SL+
Sbjct: 41 LRNLSLDNCPSLVTIHESVGFLENLRSLSAKGCTQLKIFVPCIKLTSLE 187
>AV774918
Length = 541
Score = 42.0 bits (97), Expect = 4e-04
Identities = 20/61 (32%), Positives = 36/61 (58%), Gaps = 3/61 (4%)
Frame = -1
Query: 616 KQNDK---MYSIVFLNVTQLTLCHCNLSDECLPILLKWCVNMTSLDLMYNNFKILPECNT 672
++ND+ + ++ N+ L+ C+LSDE L ++L + N+ LDL +++F PEC
Sbjct: 418 QENDEEKGSFMLLSSNIESLSFIRCHLSDEFLLLVLPFFANLKELDLSHSDFTFAPECIK 239
Query: 673 E 673
E
Sbjct: 238 E 236
>BP057104
Length = 496
Score = 39.7 bits (91), Expect = 0.002
Identities = 27/70 (38%), Positives = 38/70 (53%), Gaps = 2/70 (2%)
Frame = -3
Query: 505 NLSNLEKLSFEYCDNLITIHNSIGHLNKLERLSAFGCREFKRFPPL--GLASLKELNLRY 562
+ S L+ L +C NL + ++IG L+ LE L G F PP L+ L+ LNL +
Sbjct: 323 HFSCLQHLDLSFC-NLRQVPDAIGWLHSLEDLD-LGGNNFISLPPSIKELSKLRVLNLEH 150
Query: 563 CESLDSFPEL 572
C+ L FPEL
Sbjct: 149 CKQLRYFPEL 120
>BP043329
Length = 484
Score = 38.5 bits (88), Expect = 0.004
Identities = 34/115 (29%), Positives = 51/115 (43%), Gaps = 8/115 (6%)
Frame = +3
Query: 496 IMYNDFF-------FDNLSNLEKLSFEYCDNLITIHNSIGHLNKLERLSAFGCREFKRFP 548
+ YN F+ NL+NLE + C+ + I +SIG+L K
Sbjct: 51 LSYNPFYPGRIPPEIGNLTNLEVVWLTQCNLVGVIPDSIGNLKK---------------- 182
Query: 549 PLGLASLKELNLRYCESLDSFPELLCKMTNIDNIWLQHTSI-GELPFSFQNLSEL 602
LK+L+L + S P L +T++ I L + S+ GELP NL+EL
Sbjct: 183 ------LKDLDLALNDLYGSIPSSLTGLTSLRQIELYNNSLSGELPRGMGNLTEL 329
>TC14265 weakly similar to UP|AAN62760 (AAN62760) Disease resistance
protein-like protein MsR1, partial (5%)
Length = 766
Score = 37.7 bits (86), Expect = 0.007
Identities = 28/97 (28%), Positives = 43/97 (43%)
Frame = +1
Query: 506 LSNLEKLSFEYCDNLITIHNSIGHLNKLERLSAFGCREFKRFPPLGLASLKELNLRYCES 565
L NLE L C +L + +SIG L+K L+ L++ C S
Sbjct: 16 LENLELLRLSSCTDLKGLPDSIGRLSK----------------------LRLLDISNCIS 129
Query: 566 LDSFPELLCKMTNIDNIWLQHTSIGELPFSFQNLSEL 602
L S PE + + N+ ++++ + ELP S NL L
Sbjct: 130 LPSLPEEIGNLCNLKSLYMTSCAGCELPSSIVNLQNL 240
>AW428699
Length = 319
Score = 35.8 bits (81), Expect = 0.027
Identities = 21/44 (47%), Positives = 26/44 (58%)
Frame = +2
Query: 319 CLS*HCLLLKRV*IDRG*KYTSFSL*PLYNTSSTSVG*KVTHRH 362
C S*HCLL +RV + R YTS SL L S+G* ++H H
Sbjct: 146 CFS*HCLLRRRVSLGRCSTYTSCSLWLLRYRLHKSIG**ISHTH 277
>AV427118
Length = 317
Score = 35.4 bits (80), Expect = 0.035
Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 2/104 (1%)
Frame = +2
Query: 335 G*KYTSFSL*PLYNTSSTSVG*KVTHRHKLLL-CDIT*LDRGYG*RSRPTRIN*RAWRKK 393
G YTS SL* + + +G* ++H+H+ +IT*+D YG*R+ +I A K
Sbjct: 5 GSTYTSCSL*RVCDRLHQCIG**ISHKHQFKW*ANIT*MDAEYG*RNCSAKIIKNALCK* 184
Query: 394 *VMLP**YS*CLKRKHWN**NSNDVYEFSLH-GIHNRPKRNGLQ 436
*VM P ++ R + N N N + F L+ HN+ GLQ
Sbjct: 185 *VMDPSRHTSSFGRLYGNPQN*NHMPGFILN*RRHNKLGWKGLQ 316
>TC10205 weakly similar to UP|Q8RL77 (Q8RL77) HpaG, partial (10%)
Length = 586
Score = 31.2 bits (69), Expect = 0.67
Identities = 17/56 (30%), Positives = 28/56 (49%), Gaps = 2/56 (3%)
Frame = +3
Query: 505 NLSNLEKLSFEYCDNLITIHNSIGHLNKLERLSAFGCREFKRFPP--LGLASLKEL 558
NL ++ L C +L + +G L KLE+L+ GC P + L +L+E+
Sbjct: 27 NLEQVQFLDISDCISLSHLPEDMGELKKLEKLNVRGCSRLTELPTSIMDLENLEEV 194
>TC11433 similar to UP|AAR99871 (AAR99871) Strubbelig receptor family 3,
partial (24%)
Length = 565
Score = 29.3 bits (64), Expect = 2.5
Identities = 19/62 (30%), Positives = 30/62 (47%), Gaps = 1/62 (1%)
Frame = +2
Query: 552 LASLKELNLRYCESLDSFPELLCKMTNIDNIWLQHTSI-GELPFSFQNLSELDELSVVNG 610
L L +++L P+ +T + N+ L ++ GELP S +NLS L L + N
Sbjct: 248 LTGLTDMSLNENHLSGEIPDAFQSLTQLINLDLSTNNLSGELPPSVENLSALTTLRLQNN 427
Query: 611 ML 612
L
Sbjct: 428 QL 433
>BP055604
Length = 464
Score = 28.5 bits (62), Expect = 4.3
Identities = 15/43 (34%), Positives = 22/43 (50%)
Frame = -3
Query: 503 FDNLSNLEKLSFEYCDNLITIHNSIGHLNKLERLSAFGCREFK 545
++ L +L L C L ++ + HL+ LERL GC E K
Sbjct: 462 WEGLHSLRYLRIWGCPGLRSLPDGFQHLSALERLIIEGCPELK 334
>BP034890
Length = 490
Score = 28.1 bits (61), Expect = 5.7
Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Frame = -3
Query: 598 NLSELDELSVVNGMLRFPKQNDKMYSIVFLNVTQLTLCHCNLSDECLPILLKWCVN-MTS 656
++S+ +++ NG+L FP++N K S T L L N+ D CL LL + M +
Sbjct: 422 SISKSNKMETSNGVLAFPRENQKEQS------TDL-LMDFNVGDFCLSDLLNSDFDGMCN 264
Query: 657 LDLMYNNFKILPECNTEE---ENVVFIDPYIRKMKLDEYLNPYSNNTSLSQFV 706
L NN + L C+ + +F D + R D+ N +N S + F+
Sbjct: 263 LANNDNNNEPLSPCSDXPPLFSDEIFKD-WTRCSFADDETNVSNNLHSFTSFL 108
>TC9271 weakly similar to UP|Q9SFG3 (Q9SFG3) F2O10.5 protein (At3g05990),
partial (32%)
Length = 1035
Score = 27.3 bits (59), Expect = 9.6
Identities = 23/89 (25%), Positives = 35/89 (38%), Gaps = 24/89 (26%)
Frame = +1
Query: 548 PPLGLASLKELNLRYCESLDSFPELLCKMTNIDNIWLQHTSI------------------ 589
P + + +L N+ SL F + MT + NIWL + S+
Sbjct: 190 PRIRVVTLNLTNMNLSGSLSPF---VANMTALANIWLGNNSLSGQIPELSSLTLLETLHL 360
Query: 590 ------GELPFSFQNLSELDELSVVNGML 612
GE+P S N+S L E+ + N L
Sbjct: 361 EDNQFTGEIPSSLGNISTLHEVFLQNNNL 447
>BP054637
Length = 437
Score = 27.3 bits (59), Expect = 9.6
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -3
Query: 16 LTCCHLPCWI 25
L CCH PCWI
Sbjct: 273 LKCCHYPCWI 244
>TC16915 weakly similar to UP|Q9SDA8 (Q9SDA8) AT2G17020 protein
(At2g17020/At2g17020), partial (29%)
Length = 1011
Score = 27.3 bits (59), Expect = 9.6
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 8/103 (7%)
Frame = +3
Query: 555 LKELNLRYCESL-DSFPELLCKMTNIDNIWLQHTSIGELPFSFQNLSELDELSVVNGMLR 613
LK L+LRYC SL D + + +T + + L + I + S S ++ L ++ LR
Sbjct: 54 LKILDLRYCRSLGDDALQAIGTLTKLKVLLLDGSDITDAGLSCLRPSVINSLYALS--LR 227
Query: 614 FPKQ-NDKMYSIVF-----LNVTQLTLCHC-NLSDECLPILLK 649
K+ DK +++F L + +L L + NLSD + +L K
Sbjct: 228 GCKRLTDKCIAVLFHGCGMLELRELDLSNLPNLSDNGVLMLAK 356
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.356 0.158 0.588
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,264,025
Number of Sequences: 28460
Number of extensions: 225559
Number of successful extensions: 3214
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 2403
Number of HSP's successfully gapped in prelim test: 82
Number of HSP's that attempted gapping in prelim test: 737
Number of HSP's gapped (non-prelim): 2588
length of query: 785
length of database: 4,897,600
effective HSP length: 97
effective length of query: 688
effective length of database: 2,136,980
effective search space: 1470242240
effective search space used: 1470242240
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.7 bits)
S2: 59 (27.3 bits)
Medicago: description of AC126790.12