BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126790.10 + phase: 0
(1621 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AU089582 145 1e-55
TC19412 similar to UP|Q84KB0 (Q84KB0) Pol protein, partial (7%) 155 5e-52
AU251673 176 3e-44
AV427422 134 9e-32
BP055130 106 3e-23
BP054462 96 6e-20
BP068965 95 1e-19
BG662087 95 1e-19
BP085845 93 3e-19
BE122516 86 4e-17
BF177840 81 1e-15
BP046863 79 7e-15
AV410603 75 8e-14
TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase regi... 59 8e-09
TC18927 similar to PIR|AI2934|AI2934 chromate transport protein ... 45 9e-05
BP052997 39 0.007
TC12574 38 0.011
AV779679 36 0.055
TC8182 weakly similar to UP|Q93VA8 (Q93VA8) At1g76010/T4O12_22, ... 33 0.27
AW719223 33 0.36
>AU089582
Length = 383
Score = 145 bits (365), Expect(2) = 1e-55
Identities = 70/80 (87%), Positives = 75/80 (93%)
Frame = +2
Query: 1311 ASQYAKIYLEEIVSLHGVPISIISDRGAQFTAQFWKSFQAALGTRLNLSTAFHPQTDGQS 1370
ASQYAKIYL+EIVSLHGVP+SIISDRGAQFT+ FW+SFQ ALGTRL +STAFHPQTDGQS
Sbjct: 11 ASQYAKIYLDEIVSLHGVPVSIISDRGAQFTSHFWRSFQTALGTRLKMSTAFHPQTDGQS 190
Query: 1371 ERTIQILEDMLRACVLDLGG 1390
ERTIQILEDMLRACV DL G
Sbjct: 191 ERTIQILEDMLRACVXDLRG 250
Score = 90.9 bits (224), Expect(2) = 1e-55
Identities = 40/45 (88%), Positives = 43/45 (94%)
Frame = +3
Query: 1390 GSWDRYLPMMEFAYNNSYQSSIQMAPFEALYGRRCRSPIGWFEVG 1434
GSWD+YL +MEFAYNNSY+SSI MAPFEALYGRRCRSPIGWFEVG
Sbjct: 249 GSWDQYLSLMEFAYNNSYRSSI*MAPFEALYGRRCRSPIGWFEVG 383
>TC19412 similar to UP|Q84KB0 (Q84KB0) Pol protein, partial (7%)
Length = 519
Score = 155 bits (392), Expect(3) = 5e-52
Identities = 72/83 (86%), Positives = 79/83 (94%)
Frame = +3
Query: 1487 RVSPMKGVLRFGKKGKLTPRFIGPFEILERVGPVAYRLALPPDLSRVHPVFHISMLRKYI 1546
RVSPMKGVLRFGKKGKL+PRFIGPFE+LERVG V+YRLALPPDLS VHPVFH+SMLRKY+
Sbjct: 3 RVSPMKGVLRFGKKGKLSPRFIGPFEVLERVGSVSYRLALPPDLSAVHPVFHVSMLRKYL 182
Query: 1547 YDPSHVISHKDVQLDENLSYTEH 1569
YDPSHVI H+DVQLD +LSYTEH
Sbjct: 183 YDPSHVIRHEDVQLDVHLSYTEH 251
Score = 66.2 bits (160), Expect(3) = 5e-52
Identities = 28/38 (73%), Positives = 33/38 (86%)
Frame = +2
Query: 1583 SKDIVSVKVLWKGPSGEETTWEPEETIRGKYPHLFENQ 1620
SKD+ SVKVLW+GPSGEE TWE E+ +R KYPHLFE+Q
Sbjct: 293 SKDVGSVKVLWRGPSGEEATWEAEDIMREKYPHLFESQ 406
Score = 22.7 bits (47), Expect(3) = 5e-52
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +1
Query: 1570 PVALVDKGVRRLR 1582
PVA+VD+ V+RLR
Sbjct: 253 PVAIVDRQVKRLR 291
>AU251673
Length = 413
Score = 176 bits (446), Expect = 3e-44
Identities = 84/136 (61%), Positives = 103/136 (74%)
Frame = +2
Query: 162 GCSDVRAVELTSYQLEGVAHDWFDTVTHGRQMGSSPMAWKEFSKLFMARFLPQSVRDQLA 221
GCSD RAVEL S+QLEGVA DW++ +T + +GS P W +FS FM RFLPQSVRD
Sbjct: 2 GCSDTRAVELASFQLEGVARDWYNVLTRAKPVGSPPWTWADFSAEFMNRFLPQSVRDGFV 181
Query: 222 HEFEIFEQTEGMSVSEYSARFTQLSRYAAYCVTEEMRIKKFIRGLREYIFRSVVGSNCQT 281
+FE EQ EGM+VSEYSA FT LSRY Y + EE R+K+F+RGL+EY+F+SVVGS T
Sbjct: 182 RDFERLEQAEGMTVSEYSAHFTHLSRYVPYPLLEEERVKRFVRGLKEYLFKSVVGSKSST 361
Query: 282 FADVLSLALQIEQRQK 297
++VLSLAL +EQRQK
Sbjct: 362 LSEVLSLALLVEQRQK 409
>AV427422
Length = 417
Score = 134 bits (338), Expect = 9e-32
Identities = 64/139 (46%), Positives = 92/139 (66%)
Frame = +1
Query: 1277 TGLPRTQKGFDSVWVIIDRLTKSAHFLPVKTTYTASQYAKIYLEEIVSLHGVPISIISDR 1336
TGLP++ KG+++V V++DRL+K +HF+P+K YTA A I++ E+V LHGVP+SI+SDR
Sbjct: 4 TGLPKS-KGYEAVLVVVDRLSKFSHFVPLKHPYTAKVIADIFVREVVRLHGVPLSIVSDR 180
Query: 1337 GAQFTAQFWKSFQAALGTRLNLSTAFHPQTDGQSERTIQILEDMLRACVLDLGGSWDRYL 1396
F + FWK GT+L +STA+HP++DGQ+E + LE LR + D SW ++
Sbjct: 181 DPLFMSNFWKELFKMQGTKLKMSTAYHPESDGQTEVVNRCLETYLRCFIADQPKSWAHWV 360
Query: 1397 PMMEFAYNNSYQSSIQMAP 1415
P E+ YN SY S P
Sbjct: 361 PWAEYWYNTSYHVSTGQTP 417
>BP055130
Length = 567
Score = 106 bits (265), Expect = 3e-23
Identities = 52/112 (46%), Positives = 72/112 (63%)
Frame = +2
Query: 1285 GFDSVWVIIDRLTKSAHFLPVKTTYTASQYAKIYLEEIVSLHGVPISIISDRGAQFTAQF 1344
GF + V++DRL+K HF P + YT+SQ A+ ++ IV LHG+P +I+SDR FT+ F
Sbjct: 179 GFTVIIVVVDRLSKYGHFAPHRANYTSSQVAETFVSTIVKLHGMPRAIVSDRDKAFTSAF 358
Query: 1345 WKSFQAALGTRLNLSTAFHPQTDGQSERTIQILEDMLRACVLDLGGSWDRYL 1396
WK F GT LN+S+++HPQTDGQ+E + LE LR V + W YL
Sbjct: 359 WKHFFKLHGTTLNMSSSYHPQTDGQTEALNKCLELYLRCFVHETPRLWVSYL 514
>BP054462
Length = 422
Score = 95.5 bits (236), Expect = 6e-20
Identities = 54/148 (36%), Positives = 88/148 (58%), Gaps = 8/148 (5%)
Frame = +1
Query: 1404 NNSYQSSIQMAPFEALYGRR-------CRSPIGWFEVGEAKLVGPELIQDAIDKVKLIRD 1456
N++Y S +M+PF+ALYGR P V + ++ EL+ D +R
Sbjct: 1 NSNYNRSAKMSPFQALYGREPPVLLQGTTIPSKIAAVNDLQVGRDELLSD-------LRA 159
Query: 1457 RLVTAQSRQKSYSDKRRRPLEFTVGEHVFLRVSPMKGVLRFGKKG-KLTPRFIGPFEILE 1515
L+ +Q ++Y++K+RR +++ +G+ VFL++ P + K KL+PR+ GP+ I+
Sbjct: 160 NLLKSQDMMRTYANKKRRDVDYQIGDEVFLKLQPYRRRSLAKKMNEKLSPRYYGPYPIVA 339
Query: 1516 RVGPVAYRLALPPDLSRVHPVFHISMLR 1543
++G VAYRL LP SRVHPVFH+S+L+
Sbjct: 340 KIGAVAYRLELPAH-SRVHPVFHVSLLK 420
>BP068965
Length = 464
Score = 94.7 bits (234), Expect = 1e-19
Identities = 58/98 (59%), Positives = 60/98 (61%)
Frame = -1
Query: 429 SSHSPSAPVRQEGNSFVRGSGASQHGGRGPGGRGQSQVGRGHARVFALTRQDAQASNAVV 488
SS SP+APVRQ G+SF RG G SQ GRGPGGRGQ Q GRG ARVFALTR DA ASNAVV
Sbjct: 464 SSQSPAAPVRQVGSSFGRGHGGSQQNGRGPGGRGQGQAGRGQARVFALTRPDAHASNAVV 285
Query: 489 TGTLSVCSQDAHVLFDPGATYSFVSLYFAPRLGKSSSF 526
T S A PG S V L P L S F
Sbjct: 284 TD-----SSAAE*QAVPGFRLSVVLLVGLPWLVASLLF 186
>BG662087
Length = 373
Score = 94.7 bits (234), Expect = 1e-19
Identities = 49/119 (41%), Positives = 69/119 (57%)
Frame = +1
Query: 734 GSMRLCVDYRQLNKVTIKNKYPLPRIDELFDQLQGAQCFSKIDLRSGYHQLKIKSEDISK 793
G R+ VDY LNK K+ YPLP ID+L D + S +D SGYHQ+K+ D K
Sbjct: 16 GKWRMWVDYTDLNKACPKDSYPLPSIDKLVDGASDNELLSLMDAYSGYHQIKMHPSDEDK 195
Query: 794 TAFRTRYGHYEFLVMSFGLTNAPAAFMDLMNRVFKPFLDRFVIVFIDDILIYSKSREEH 852
TAF T +Y + + FGL NA A + LM+RVF + R + V++D++++ S R H
Sbjct: 196 TAFMTARVNYCYQTIPFGLKNAGATYQXLMDRVFXDXVGRNMEVYLDNMIVKSALRANH 372
>BP085845
Length = 464
Score = 93.2 bits (230), Expect = 3e-19
Identities = 51/118 (43%), Positives = 72/118 (60%)
Frame = -2
Query: 1487 RVSPMKGVLRFGKKGKLTPRFIGPFEILERVGPVAYRLALPPDLSRVHPVFHISMLRKYI 1546
R+S + V + KK K + IGPF+ILE V +AY L L H V H+++L + +
Sbjct: 457 RLSNERSVAVW*KKRKTESKIIGPFKILEMVCLIAY*LTHSLYLLAAHIVLHVTLLWRNL 278
Query: 1547 YDPSHVISHKDVQLDENLSYTEHPVALVDKGVRRLRSKDIVSVKVLWKGPSGEETTWE 1604
YD S I H+ V L E+ S+ EHP+ +VD VR +R K+I VKV+W+G SG E +WE
Sbjct: 277 YDQSQNICHEGVXLGEHWSHMEHPIVMVDMKVRCMRPKNIDDVKVIWRGLSG*EKSWE 104
>BE122516
Length = 364
Score = 86.3 bits (212), Expect = 4e-17
Identities = 50/127 (39%), Positives = 75/127 (58%), Gaps = 2/127 (1%)
Frame = +2
Query: 575 LGMDWLSLHHATVDCHNKVVKFKPPGEATFSFQGERSWVPNNLISSLRANKL-LSRGCQG 633
+GM+WL+ + AT++C K V F + +G+ V R +K+ + C+
Sbjct: 14 VGMNWLTANDATLNCRKKTVTFG-------TSEGDAKRVK-------RTDKVGKASECES 151
Query: 634 YLAL-VRDVQAGEEKLENVPIVCEFSDVFPEELPGIPPDREIEFSIDLIPGTQPISIPPY 692
+ L + + +E +P+V EFSDVFPEE+ +PP+RE+EFSID +PGT PISI PY
Sbjct: 152 DVLLGALETDKSDTGVEGIPVVREFSDVFPEEVSELPPEREVEFSID*VPGTGPISIAPY 331
Query: 693 RMAPAEL 699
RM+ EL
Sbjct: 332 RMSLVEL 352
>BF177840
Length = 410
Score = 81.3 bits (199), Expect = 1e-15
Identities = 39/98 (39%), Positives = 60/98 (60%)
Frame = +2
Query: 1331 SIISDRGAQFTAQFWKSFQAALGTRLNLSTAFHPQTDGQSERTIQILEDMLRACVLDLGG 1390
SI+SDR +F + FW++ +GT+L ST HPQTDGQ+E + L +LR+ +
Sbjct: 14 SIVSDRDTKFISHFWRTLWGKVGTKLLYSTTCHPQTDGQTEVVNKTLSTLLRSVLERNLK 193
Query: 1391 SWDRYLPMMEFAYNNSYQSSIQMAPFEALYGRRCRSPI 1428
W+ +LP +EFAYN S+ + +PFE +YG +P+
Sbjct: 194 MWETWLPHIEFAYNRVVHSTTKHSPFEIVYGYNPLTPL 307
>BP046863
Length = 580
Score = 78.6 bits (192), Expect = 7e-15
Identities = 44/92 (47%), Positives = 62/92 (66%), Gaps = 1/92 (1%)
Frame = +1
Query: 1454 IRDRLVTAQSRQKSYSDKRRRPLEFTVGEHVFLRVSPMK-GVLRFGKKGKLTPRFIGPFE 1512
+R L+ AQ + ++ ++K RR +++ VG VFL++ P K L K KL+PRF GPF+
Sbjct: 307 LRGNLLKAQDQMRAQANKHRRYVDYQVGNWVFLKLQPYKLQNLAQRKNQKLSPRFYGPFK 486
Query: 1513 ILERVGPVAYRLALPPDLSRVHPVFHISMLRK 1544
+LERV VAY L L + SRVHPVFH+S+L K
Sbjct: 487 VLERVVQVAY*LDLXSE-SRVHPVFHLSLLEK 579
>AV410603
Length = 162
Score = 75.1 bits (183), Expect = 8e-14
Identities = 31/53 (58%), Positives = 43/53 (80%)
Frame = +1
Query: 749 TIKNKYPLPRIDELFDQLQGAQCFSKIDLRSGYHQLKIKSEDISKTAFRTRYG 801
T+K+ +P+P +DEL D+L+G+Q FSK+DLRSGYHQ+ +K ED KT FRT +G
Sbjct: 4 TVKDSFPMPTVDELLDELRGSQFFSKLDLRSGYHQILVKPEDRHKTVFRTHHG 162
>TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase region
(Fragment), partial (10%)
Length = 572
Score = 58.5 bits (140), Expect = 8e-09
Identities = 29/94 (30%), Positives = 52/94 (54%)
Frame = +2
Query: 1335 DRGAQFTAQFWKSFQAALGTRLNLSTAFHPQTDGQSERTIQILEDMLRACVLDLGGSWDR 1394
+ G QFT++ + F +G ++ S+ HPQT+GQ+E +++ ++ + + G W
Sbjct: 8 ENGIQFTSKQTQDFCDGMGIQMRFSSVKHPQTNGQTEAANKVILKGIKRRLYEAEGRWID 187
Query: 1395 YLPMMEFAYNNSYQSSIQMAPFEALYGRRCRSPI 1428
LP++ ++YN QSSI+ PF YG P+
Sbjct: 188 ELPIVLWSYNTMPQSSIKETPF*LTYGADTMLPV 289
>TC18927 similar to PIR|AI2934|AI2934 chromate transport protein chrA
[imported] - Agrobacterium tumefaciens
(strain C58, Dupont) {Agrobacterium tumefaciens;},
partial (6%)
Length = 561
Score = 45.1 bits (105), Expect = 9e-05
Identities = 48/202 (23%), Positives = 80/202 (38%), Gaps = 8/202 (3%)
Frame = -2
Query: 321 NRGGG----SMFGYQGQQKSVSQKGGFSGQSSGTVQSHRSGHRGSTGSTFPHRHSSGTTR 376
N+G G S G + KS +K Q+ GT SG+ S G+ P S T+
Sbjct: 503 NQGSGGPNRSAPGRFDRNKSFQKKPFQRPQNRGT----SSGYSHSFGNFVPRPTQSDTSE 336
Query: 377 A----CSVCGRFHSGTCFNDDRECFQCGQKGHIKKNCPIPTTQPSSSRASAPVALASSHS 432
CS G F + C D C+ C + GH K+C P + +++ +A +++
Sbjct: 335 IVCHRCSKKGHF-ANRC--PDLVCWNCQKTGHSGKDCTNPKVEAATNAIAARRPAPAANK 165
Query: 433 PSAPVRQEGNSFVRGSGASQHGGRGPGGRGQSQVGRGHARVFALTRQDAQASNAVVTGTL 492
PV ARV+ ++ ++ ++ ++
Sbjct: 164 GKRPVAS-------------------------------ARVYTVSGAESHRADGLIRSVG 78
Query: 493 SVCSQDAHVLFDPGATYSFVSL 514
SV + +LFD GAT+SF+ L
Sbjct: 77 SVNCKPLTILFDSGATHSFIDL 12
>BP052997
Length = 544
Score = 38.9 bits (89), Expect = 0.007
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = -1
Query: 622 RANKLLSRGCQGYLAL-VRDVQAGEEKLENVPIVCEFSDVFPEELPGIPPDREIEFSIDL 680
+ +LL +GC GY+ L R ++ ++KLE + +VC+F V + R IEFSI L
Sbjct: 253 KVRRLLRKGCHGYMTLGKRILKQLKKKLEEILVVCDF--VMNFLMY*SIDHRRIEFSIKL 80
Query: 681 IPGT 684
+P T
Sbjct: 79 VPST 68
>TC12574
Length = 325
Score = 38.1 bits (87), Expect = 0.011
Identities = 15/33 (45%), Positives = 25/33 (75%)
Frame = +2
Query: 819 FMDLMNRVFKPFLDRFVIVFIDDILIYSKSREE 851
F + +N +F+ F + F+IVFI+DIL Y++ +EE
Sbjct: 2 FKNSVNHIFESFFEHFMIVFINDILSYTEDKEE 100
>AV779679
Length = 440
Score = 35.8 bits (81), Expect = 0.055
Identities = 17/30 (56%), Positives = 21/30 (69%)
Frame = +3
Query: 735 SMRLCVDYRQLNKVTIKNKYPLPRIDELFD 764
+M+LC DY QL+ VTI NK LP +DE D
Sbjct: 345 TMQLCDDYMQLDYVTIPNKSLLPHLDEWSD 434
Score = 32.7 bits (73), Expect = 0.47
Identities = 22/63 (34%), Positives = 29/63 (45%)
Frame = +2
Query: 601 EATFSFQGERSWVPNNLISSLRANKLLSRGCQGYLALVRDVQAGEEKLENVPIVCEFSDV 660
E+ F GE SW P NLI + R V+D QA E K E + +VCE +
Sbjct: 68 ESFFLI*GE*SWEPCNLILVSKLEGY*RRVVMDT*L*VKDTQAVEIKTEEILVVCEILNA 247
Query: 661 FPE 663
+ E
Sbjct: 248 YRE 256
>TC8182 weakly similar to UP|Q93VA8 (Q93VA8) At1g76010/T4O12_22, partial
(13%)
Length = 611
Score = 33.5 bits (75), Expect = 0.27
Identities = 20/32 (62%), Positives = 21/32 (65%)
Frame = +3
Query: 16 ESNAPPQGTRHRGRGRARGGRGVNVRGRGVNA 47
E +APP RGRGR RGGRG RGRG NA
Sbjct: 180 EYDAPPAP---RGRGRGRGGRG---RGRGRNA 257
Score = 28.9 bits (63), Expect = 6.7
Identities = 15/28 (53%), Positives = 16/28 (56%)
Frame = +3
Query: 447 GSGASQHGGRGPGGRGQSQVGRGHARVF 474
G G GGRG GGRG+ GRG R F
Sbjct: 42 GGGDGWDGGRGYGGRGRG-FGRGRGRGF 122
>AW719223
Length = 299
Score = 33.1 bits (74), Expect = 0.36
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = -1
Query: 473 VFALTRQDAQASNAVVT 489
VFALTRQDA ASNAVVT
Sbjct: 299 VFALTRQDAHASNAVVT 249
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.320 0.136 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,399,213
Number of Sequences: 28460
Number of extensions: 379861
Number of successful extensions: 2182
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 2054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2154
length of query: 1621
length of database: 4,897,600
effective HSP length: 103
effective length of query: 1518
effective length of database: 1,966,220
effective search space: 2984721960
effective search space used: 2984721960
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Medicago: description of AC126790.10