TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC126788.1 - phase: 0 /pseudo
         (981 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AU089582                                                               38  3e-05
BP056979                                                               28  5.4
BP075284                                                               28  5.4

>AU089582 
          Length = 383

 Score = 38.1 bits (87), Expect(2) = 3e-05
 Identities = 28/68 (41%), Positives = 38/68 (55%)
 Frame = +3

Query: 666 LSWRRFIFGTL*SCMVFRRVLYQIEIRGSLLDSGRVSKMLWARN*G*VRLIILRRMVSRR 725
           L+  RF +  L  CMV+  + +QIE   S    G + K+LW  +* *V L IL+ MVS R
Sbjct: 15  LNMLRFTWMRLFPCMVYLCL*FQIEELNSHHIFGGLFKLLWELD*K*VPLFILKLMVSPR 194

Query: 726 ERYNP*RI 733
             +  *RI
Sbjct: 195 GLFRS*RI 218



 Score = 27.3 bits (59), Expect(2) = 3e-05
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = +1

Query: 767 WHRLKPCMVEGAELLCVG 784
           WH LKPCMV  A  L VG
Sbjct: 319 WHHLKPCMVGDAGHL*VG 372


>BP056979 
          Length = 508

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 17/37 (45%), Positives = 24/37 (63%)
 Frame = -3

Query: 701 VSKMLWARN*G*VRLIILRRMVSRRERYNP*RIY*GC 737
           VSK    R   *V ++IL+RM+S RE ++P  + *GC
Sbjct: 110 VSKQCLLRGPR*VVIVILQRMISNRE-HDPQELI*GC 3


>BP075284 
          Length = 358

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 13/23 (56%), Positives = 15/23 (64%)
 Frame = +2

Query: 604 NIRSLQGC*HHWMYRSGNGIVFL 626
           NIRS + C HHW  RSG  +V L
Sbjct: 131 NIRSTEACKHHW--RSGGMVVLL 193


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.373    0.166    0.653 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,802,031
Number of Sequences: 28460
Number of extensions: 286237
Number of successful extensions: 3961
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2117
Number of HSP's successfully gapped in prelim test: 142
Number of HSP's that attempted gapping in prelim test: 1757
Number of HSP's gapped (non-prelim): 2421
length of query: 981
length of database: 4,897,600
effective HSP length: 99
effective length of query: 882
effective length of database: 2,080,060
effective search space: 1834612920
effective search space used: 1834612920
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 13 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (22.0 bits)
S2: 60 (27.7 bits)