TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC126787.14 - phase: 0 
         (370 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP058668                                                               29  1.4
BP036717                                                               28  1.9
AV423696                                                               28  1.9
BP053309                                                               27  4.2
BP048741                                                               27  5.4
TC20055                                                                27  5.4
TC15527 similar to UP|AAR87166 (AAR87166) Expressed protein (Wit...    27  7.1
TC9093 UP|Q9SE27 (Q9SE27) Vacuolar H+-ATP synthase 16kDa proteol...    27  7.1
BP053824                                                               27  7.1
AI967337                                                               26  9.3

>BP058668 
          Length = 444

 Score = 28.9 bits (63), Expect = 1.4
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 67  NDDVVFVEDRGLCVSLLHEIAWEV 90
           +D+VV      LCV+LLHEI+W V
Sbjct: 102 SDNVVATIRSLLCVNLLHEISWNV 173


>BP036717 
          Length = 477

 Score = 28.5 bits (62), Expect = 1.9
 Identities = 28/72 (38%), Positives = 32/72 (43%), Gaps = 10/72 (13%)
 Frame = -1

Query: 22  MAGWHLSRNK--VLFFSGA--------LFITLAVGVHLTPYFPSVSDFMSSVKSSNDDVV 71
           + G HLS N   VL FSG         L +T    V L    P V D    V  + +D V
Sbjct: 327 LRGIHLS*NDTVVLQFSGGGCVLRRERLTVTAPWSVKLHHDKPVVLDDSGEVPLNQNDDV 148

Query: 72  FVEDRGLCVSLL 83
           FV  RGL V LL
Sbjct: 147 FVIHRGLLVRLL 112


>AV423696 
          Length = 427

 Score = 28.5 bits (62), Expect = 1.9
 Identities = 16/51 (31%), Positives = 23/51 (44%)
 Frame = +1

Query: 110 FWSWSRLNSVSECEFQRLKRKDVMDLLNGSWVMIVGDSQARIFTLSLLSLV 160
           +W W      +EC   R +    + L+    V  VGDS AR    SLL ++
Sbjct: 70  YWRWKP----NECNIPRFEPHTFLQLIRNKHVAFVGDSLARNQLESLLCML 210


>BP053309 
          Length = 484

 Score = 27.3 bits (59), Expect = 4.2
 Identities = 16/49 (32%), Positives = 28/49 (56%), Gaps = 1/49 (2%)
 Frame = -2

Query: 243 LLRNSVT-SMLPVSPKFGNDEPAMGSVSSVRSPHLFWLGMPTLINSMLN 290
           L+R S + S++P+S +  ND+P +G +S        W     L+N++LN
Sbjct: 423 LIRKSDSPSVIPISAQCFNDKPIVGIISPESGTTFVW-----LLNTILN 292


>BP048741 
          Length = 558

 Score = 26.9 bits (58), Expect = 5.4
 Identities = 12/28 (42%), Positives = 17/28 (59%), Gaps = 1/28 (3%)
 Frame = +2

Query: 333 LNCGIKCTDDGMHYDGAVY-EAELHIMF 359
           L+CG+ CT   +H  GA + E E  I+F
Sbjct: 419 LHCGVFCTPQWLHRRGAAWSEQEFRILF 502


>TC20055 
          Length = 556

 Score = 26.9 bits (58), Expect = 5.4
 Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
 Frame = +2

Query: 179 DYHID--IDEMGLKLDFIWAPYPNNLTDLVMRFKKKHLYPDVL 219
           D+H+   ++  G +L  ++A Y  +L D V  + +KHL+P++L
Sbjct: 296 DFHVAKFVEFKGQELG-LFAIYDGHLGDTVPAYLQKHLFPNIL 421


>TC15527 similar to UP|AAR87166 (AAR87166) Expressed protein (With
           alternative splicing), partial (8%)
          Length = 562

 Score = 26.6 bits (57), Expect = 7.1
 Identities = 13/45 (28%), Positives = 23/45 (50%)
 Frame = -1

Query: 169 VRSFLFKRHSDYHIDIDEMGLKLDFIWAPYPNNLTDLVMRFKKKH 213
           V   +FK+H DY+I  D       F +  Y + L  + + +K++H
Sbjct: 490 VMEIIFKKHIDYNIARDHY-----FCFHHYTDELEVITLSYKQRH 371


>TC9093 UP|Q9SE27 (Q9SE27) Vacuolar H+-ATP synthase 16kDa proteolipid
           subunit  (Vacuolar ATP synthase proteolipid subunit) ,
           complete
          Length = 1062

 Score = 26.6 bits (57), Expect = 7.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 206 VMRFKKKHLYPDVLVMGSGLWH 227
           V+R  ++   P  L+ GSGLWH
Sbjct: 106 VLRLSRRRRCPCFLLYGSGLWH 171


>BP053824 
          Length = 395

 Score = 26.6 bits (57), Expect = 7.1
 Identities = 10/22 (45%), Positives = 13/22 (58%)
 Frame = +3

Query: 221 MGSGLWHMLHITNASDYGGLLG 242
           +G G +H +H T     GGLLG
Sbjct: 93  LGVGWYHFVHFTRGHTLGGLLG 158


>AI967337 
          Length = 461

 Score = 26.2 bits (56), Expect = 9.3
 Identities = 17/66 (25%), Positives = 32/66 (47%)
 Frame = +3

Query: 71  VFVEDRGLCVSLLHEIAWEVMPSKVFDPLLRNNSLNYDKFWSWSRLNSVSECEFQRLKRK 130
           +F     L V+ +  +++ V+ +  F  + R   LNY KFW+ +  N+ +     +L  +
Sbjct: 84  MFPPPSSLVVTAMSVVSFVVLANSGFSEI-RGKHLNYSKFWNANSGNAAAAQRHIKLSGR 260

Query: 131 DVMDLL 136
             M LL
Sbjct: 261 AGMLLL 278


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.324    0.139    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,830,686
Number of Sequences: 28460
Number of extensions: 99410
Number of successful extensions: 448
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of query: 370
length of database: 4,897,600
effective HSP length: 92
effective length of query: 278
effective length of database: 2,279,280
effective search space: 633639840
effective search space used: 633639840
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)