Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC126787.10 - phase: 0 
         (306 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC15079 similar to UP|Q84KA9 (Q84KA9) RING/C3HC4/PHD zinc finger...   100  3e-22
TC8813 weakly similar to UP|Q9XF65 (Q9XF65) RING-H2 zinc finger ...    91  3e-19
TC11328 similar to UP|Q84KA9 (Q84KA9) RING/C3HC4/PHD zinc finger...    84  3e-17
AV413409                                                               84  4e-17
BP042964                                                               76  6e-15
TC15481 similar to UP|Q9LUR1 (Q9LUR1) RING zinc finger protein-l...    74  3e-14
TC18336 similar to UP|Q84KA9 (Q84KA9) RING/C3HC4/PHD zinc finger...    73  5e-14
TC11457                                                                71  3e-13
TC14527 similar to PIR|F86340|F86340 protein F2D10.34 [imported]...    70  3e-13
BP067396                                                               69  1e-12
BP055954                                                               64  3e-11
TC11970 similar to UP|Q9FQZ7 (Q9FQZ7) Avr9/Cf-9 rapidly elicited...    62  9e-11
AU252073                                                               60  4e-10
TC10958 similar to PIR|T47938|T47938 RING finger protein - Arabi...    59  8e-10
TC19649 weakly similar to UP|RNF6_HUMAN (Q9Y252) RING finger pro...    59  8e-10
TC9362 similar to PIR|F86340|F86340 protein F2D10.34 [imported] ...    59  1e-09
TC11796 similar to GB|AAP12870.1|30017273|BT006221 At4g35840 {Ar...    58  2e-09
BP037094                                                               58  2e-09
TC17278 similar to UP|Q8GT74 (Q8GT74) NEP1-interacting protein 2...    56  7e-09
AV406818                                                               56  9e-09

>TC15079 similar to UP|Q84KA9 (Q84KA9) RING/C3HC4/PHD zinc finger-like
           protein, partial (20%)
          Length = 921

 Score =  100 bits (249), Expect = 3e-22
 Identities = 46/78 (58%), Positives = 56/78 (70%)
 Frame = +3

Query: 74  SRGLDNTLLEKFPTFLYSSVKDLRKEKSYSLECAICLLEFDDDSMLRLLTICCHVFHQEC 133
           S GL+  +++ FPTFLYS VK L+  K  +L CA+CL EF+DD  LRL+ IC HV+H  C
Sbjct: 531 SNGLNQEVIDTFPTFLYSHVKCLKIGKG-TLACAVCLNEFEDDETLRLIPICNHVYHHSC 707

Query: 134 IDLWLESHKTCPVCRTDL 151
           IDLWL SH TCPVCR  L
Sbjct: 708 IDLWLASHSTCPVCRASL 761


>TC8813 weakly similar to UP|Q9XF65 (Q9XF65) RING-H2 zinc finger protein
           ATL6, partial (24%)
          Length = 495

 Score = 90.5 bits (223), Expect = 3e-19
 Identities = 51/116 (43%), Positives = 66/116 (55%), Gaps = 4/116 (3%)
 Frame = +1

Query: 34  FVAFSVVYVCKYCFAGFFHTWALQRTTSG--SLVRLSPDRSP--SRGLDNTLLEKFPTFL 89
           F    V+ V      GFF  +  Q   S   S++ ++  RS   +RGLD T+++ FP   
Sbjct: 151 FAIIIVILVAALFLMGFFSIYIRQCADSNPNSVLPITHARSRRVARGLDQTVIDTFPVLE 330

Query: 90  YSSVKDLRKEKSYSLECAICLLEFDDDSMLRLLTICCHVFHQECIDLWLESHKTCP 145
           YS VK   K   ++LECA+CL EF+D   LRL+  C HVFH ECID WL SH TCP
Sbjct: 331 YSEVK-AHKIGKHALECAVCLSEFEDAETLRLIPKCDHVFHTECIDEWLVSHTTCP 495


>TC11328 similar to UP|Q84KA9 (Q84KA9) RING/C3HC4/PHD zinc finger-like
           protein, partial (27%)
          Length = 793

 Score = 84.0 bits (206), Expect = 3e-17
 Identities = 62/173 (35%), Positives = 77/173 (43%), Gaps = 4/173 (2%)
 Frame = +2

Query: 103 SLECAICLLEFDDDSMLRLLTICCHVFHQECIDLWLESHKTCPVCRTDLDSPPNQMSKHG 162
           +LECA+CL EF D   LRL+  C HVFH EC+D WL +  TCPVCR +L          G
Sbjct: 17  TLECAVCLNEFRDHETLRLIPKCSHVFHAECVDAWLVNQSTCPVCRANL--------LQG 172

Query: 163 EGNHNNNNNNLNVQEGMTSLPCDDIHIDVRGEESDNVGEITRAQVHEGDQHDHHVGMSMQ 222
           +         +   EG  S        D      DN       +V     + +    S  
Sbjct: 173 DAATTFVAVQIPDPEGHGSTTPVPGSGDPSPNRVDNSSNNQSPKVGSDLVNQNRPVRSRS 352

Query: 223 QQEDHRFSRSHSTGHSIVTIRGEEKDHEKYTLRLPEHV----IRGGHNYTRSC 271
                 F RSHSTGHS+    GE  D E++TLRLPE V    +    N T SC
Sbjct: 353 TGFRSWFPRSHSTGHSL----GE--DWERFTLRLPEEVRNRLVNSTLNRTTSC 493


>AV413409 
          Length = 374

 Score = 83.6 bits (205), Expect = 4e-17
 Identities = 39/66 (59%), Positives = 46/66 (69%)
 Frame = +1

Query: 90  YSSVKDLRKEKSYSLECAICLLEFDDDSMLRLLTICCHVFHQECIDLWLESHKTCPVCRT 149
           YS+VKD +  K  +LECA+CL EF+D   LRL+  C HVFH ECID WL SH TCPVCR 
Sbjct: 4   YSAVKDHKIGKG-ALECAVCLNEFEDTETLRLIPKCDHVFHPECIDEWLSSHSTCPVCRA 180

Query: 150 DLDSPP 155
           +L   P
Sbjct: 181 NLTPQP 198


>BP042964 
          Length = 575

 Score = 76.3 bits (186), Expect = 6e-15
 Identities = 33/73 (45%), Positives = 46/73 (62%)
 Frame = +1

Query: 76  GLDNTLLEKFPTFLYSSVKDLRKEKSYSLECAICLLEFDDDSMLRLLTICCHVFHQECID 135
           GLD ++++  P  LY+    L  E+S   +CA+CLL+F+    +R L IC H FH +CID
Sbjct: 226 GLDESVIKTIPFSLYTP--KLHIEESRRSDCAVCLLDFEHQDYVRTLPICSHTFHLDCID 399

Query: 136 LWLESHKTCPVCR 148
            WL SH  CP+CR
Sbjct: 400 AWLRSHANCPLCR 438


>TC15481 similar to UP|Q9LUR1 (Q9LUR1) RING zinc finger protein-like,
           partial (32%)
          Length = 706

 Score = 73.9 bits (180), Expect = 3e-14
 Identities = 33/86 (38%), Positives = 48/86 (55%)
 Frame = +1

Query: 75  RGLDNTLLEKFPTFLYSSVKDLRKEKSYSLECAICLLEFDDDSMLRLLTICCHVFHQECI 134
           RGL+ +++   P F Y    D +       ECA+CL EF+     R+L  C H FH +CI
Sbjct: 343 RGLEASVITLLPVFSY----DPKAHPEGPPECAVCLSEFESGETGRVLPKCKHAFHTDCI 510

Query: 135 DLWLESHKTCPVCRTDLDSPPNQMSK 160
           D+W  SH TCP+CRT ++  P   ++
Sbjct: 511 DMWFHSHSTCPLCRTLVEPEPENQTQ 588


>TC18336 similar to UP|Q84KA9 (Q84KA9) RING/C3HC4/PHD zinc finger-like
           protein, partial (15%)
          Length = 761

 Score = 73.2 bits (178), Expect = 5e-14
 Identities = 53/179 (29%), Positives = 74/179 (40%), Gaps = 11/179 (6%)
 Frame = +3

Query: 105 ECAICLLEFDDDSMLRLLTICCHVFHQECIDLWLESHKTCPVCRTDLDSPPNQMSKHGEG 164
           ECA+CL EF+    LR+L  C HVFH  CID+WL SH TCPVCR  +             
Sbjct: 3   ECAVCLGEFEGPDALRVLPKCGHVFHPGCIDMWLASHVTCPVCRARMAG----------- 149

Query: 165 NHNNNNNNLNVQEGMTSLPCDDIHIDVRGEESDNVGEITRAQVHEGD---------QHDH 215
                          T+    D+ +++ G     +     + V EG+           D 
Sbjct: 150 ---------------TAPARGDVTVEIGGGNGGALQVFDESSVREGEGENRGGGCGNFDG 284

Query: 216 HVGMSMQQQEDHRFSRSHSTGHSIVTIRGEEKDHEKYTLRLPEHVI--RGGHNYTRSCT 272
            V       +   F RSHSTGHS+V       D  + ++ +   V+  RGG    RS +
Sbjct: 285 CVEEGNGSSKVGAFVRSHSTGHSLV-------DEAEKSVEVENQVVEDRGGSLMKRSAS 440


>TC11457 
          Length = 629

 Score = 70.9 bits (172), Expect = 3e-13
 Identities = 44/126 (34%), Positives = 55/126 (42%)
 Frame = +1

Query: 27  LTVLILCFVAFSVVYVCKYCFAGFFHTWALQRTTSGSLVRLSPDRSPSRGLDNTLLEKFP 86
           L  L L  +  S V+V   C   +  T     T      RL       +GL  + L+K P
Sbjct: 184 LLALFLPCLGMSAVFVVYMCLLWYATTHHPPET------RLRAKPVSDKGLSASQLQKLP 345

Query: 87  TFLYSSVKDLRKEKSYSLECAICLLEFDDDSMLRLLTICCHVFHQECIDLWLESHKTCPV 146
           +          K+   + ECA+CL E D D   R+L  C H FH EC D WL  H  CPV
Sbjct: 346 SIT-------GKDLPLASECAVCLDEIDSDQPARVLPGCNHGFHLECADTWLSKHPLCPV 504

Query: 147 CRTDLD 152
           CR  LD
Sbjct: 505 CRAKLD 522


>TC14527 similar to PIR|F86340|F86340 protein F2D10.34 [imported] -
           Arabidopsis thaliana {Arabidopsis thaliana;}, partial
           (42%)
          Length = 1095

 Score = 70.5 bits (171), Expect = 3e-13
 Identities = 44/140 (31%), Positives = 63/140 (44%), Gaps = 2/140 (1%)
 Frame = +2

Query: 11  PPAPTYKTPPALVAFTLTVLILCFVAFSVVYVCKYCFAGFFHTWALQRTTSGSLVRLSPD 70
           P A T ++   ++   L   ++C V    V  C          W  + T  G      P 
Sbjct: 263 PEAVTLESDFVVILAALLCALICVVGLIAVARC---------AWLRRVTGDGGY----PT 403

Query: 71  RSP--SRGLDNTLLEKFPTFLYSSVKDLRKEKSYSLECAICLLEFDDDSMLRLLTICCHV 128
           R    ++G+   +++  P F Y+      +E   + ECAICL EFD    +R+L  C H 
Sbjct: 404 RQALANKGVKKKVVQSLPKFAYADSSP--REWLATTECAICLAEFDAGDEIRVLPQCGHG 577

Query: 129 FHQECIDLWLESHKTCPVCR 148
           FH  CID WL SH +CP CR
Sbjct: 578 FHVGCIDTWLGSHSSCPSCR 637


>BP067396 
          Length = 506

 Score = 68.9 bits (167), Expect = 1e-12
 Identities = 30/66 (45%), Positives = 42/66 (63%)
 Frame = -1

Query: 83  EKFPTFLYSSVKDLRKEKSYSLECAICLLEFDDDSMLRLLTICCHVFHQECIDLWLESHK 142
           E +P  LYS V+  R + S S  C+ICL ++ +   LR+L  C HV+H  C+D WL+ H 
Sbjct: 452 ESYPKLLYSEVEK-RSDSSVSSCCSICLGDYKEADTLRMLPDCGHVYHLACVDPWLKFHS 276

Query: 143 TCPVCR 148
           TCP+CR
Sbjct: 275 TCPICR 258


>BP055954 
          Length = 518

 Score = 63.9 bits (154), Expect = 3e-11
 Identities = 29/73 (39%), Positives = 44/73 (59%)
 Frame = +1

Query: 76  GLDNTLLEKFPTFLYSSVKDLRKEKSYSLECAICLLEFDDDSMLRLLTICCHVFHQECID 135
           GLD  ++  +P F Y++ +    E +    C+ICL EF +  MLR++  C H FH  C+D
Sbjct: 223 GLDPNVINSYPRFQYAAAERGHGETT----CSICLCEFKEAEMLRMMPECRHHFHLCCLD 390

Query: 136 LWLESHKTCPVCR 148
            WL+ + +CPVCR
Sbjct: 391 SWLKLNGSCPVCR 429


>TC11970 similar to UP|Q9FQZ7 (Q9FQZ7) Avr9/Cf-9 rapidly elicited protein
           132, partial (24%)
          Length = 789

 Score = 62.4 bits (150), Expect = 9e-11
 Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
 Frame = +1

Query: 108 ICLLEFDDDSMLRLLTICCHVFHQECIDLWLESHKTCPVCRTDL---DSPPNQMSKHGEG 164
           +CL E D+    RLL  C H FH +CID+W +SH TCP+CRT +   DS  N  S   + 
Sbjct: 4   VCLSELDEGEKARLLPKCNHGFHVDCIDMWFQSHSTCPLCRTSVASHDSDNNLQSSSSDS 183

Query: 165 NHNNNNNNL 173
           +     N L
Sbjct: 184 SSTFPTNVL 210


>AU252073 
          Length = 258

 Score = 60.5 bits (145), Expect = 4e-10
 Identities = 25/62 (40%), Positives = 36/62 (57%)
 Frame = +1

Query: 90  YSSVKDLRKEKSYSLECAICLLEFDDDSMLRLLTICCHVFHQECIDLWLESHKTCPVCRT 149
           +SS++D         +C ICL ++ +  +LR++  C H FH  CID+WL    TCPVCR 
Sbjct: 10  FSSIEDT--------QCVICLADYKEREVLRIMPKCGHTFHLSCIDIWLRKQSTCPVCRL 165

Query: 150 DL 151
            L
Sbjct: 166 PL 171


>TC10958 similar to PIR|T47938|T47938 RING finger protein - Arabidopsis
           thaliana {Arabidopsis thaliana;}, partial (38%)
          Length = 779

 Score = 59.3 bits (142), Expect = 8e-10
 Identities = 21/45 (46%), Positives = 32/45 (70%), Gaps = 1/45 (2%)
 Frame = +3

Query: 106 CAICLLEFDDDSMLRLLTICCHVFHQECIDLWLE-SHKTCPVCRT 149
           CA+CL EF ++  +R +  C H+FH+ C+D W++   KTCP+CRT
Sbjct: 360 CAVCLCEFSEEEEIRCMANCRHIFHRACVDRWIDHDQKTCPLCRT 494


>TC19649 weakly similar to UP|RNF6_HUMAN (Q9Y252) RING finger protein 6
           (RING-H2 protein), partial (4%)
          Length = 523

 Score = 59.3 bits (142), Expect = 8e-10
 Identities = 28/93 (30%), Positives = 46/93 (49%)
 Frame = +2

Query: 67  LSPDRSPSRGLDNTLLEKFPTFLYSSVKDLRKEKSYSLECAICLLEFDDDSMLRLLTICC 126
           L+P R+ + GLD   +  +P  +    +  R  K     C ICL E+     ++ +  C 
Sbjct: 44  LNPRRTNNTGLDGPTIASYPKIVIGD-EGTRLPKPDDKACPICLSEYMPKETVKTIPECE 220

Query: 127 HVFHQECIDLWLESHKTCPVCRTDLDSPPNQMS 159
           H FH +CID WL  + +CP+CR      P +++
Sbjct: 221 HCFHAQCIDEWLPLNASCPICRNSPRKLPQRLA 319


>TC9362 similar to PIR|F86340|F86340 protein F2D10.34 [imported] -
           Arabidopsis thaliana {Arabidopsis thaliana;}, partial
           (58%)
          Length = 591

 Score = 58.9 bits (141), Expect = 1e-09
 Identities = 24/44 (54%), Positives = 29/44 (65%)
 Frame = +1

Query: 105 ECAICLLEFDDDSMLRLLTICCHVFHQECIDLWLESHKTCPVCR 148
           +CAICL EF     +R+L  C H FH  CID WL+SH +CP CR
Sbjct: 325 DCAICLTEFAAGDEIRVLPQCGHGFHVSCIDAWLKSHSSCPSCR 456


>TC11796 similar to GB|AAP12870.1|30017273|BT006221 At4g35840 {Arabidopsis
           thaliana;}, partial (86%)
          Length = 1114

 Score = 57.8 bits (138), Expect = 2e-09
 Identities = 27/78 (34%), Positives = 41/78 (51%)
 Frame = +1

Query: 74  SRGLDNTLLEKFPTFLYSSVKDLRKEKSYSLECAICLLEFDDDSMLRLLTICCHVFHQEC 133
           ++GL    +EK P    ++  +        + C++CL +F     +R L  C H+FH  C
Sbjct: 517 AKGLSGDSVEKIPKIKITTDNNA-DASGERVSCSVCLQDFQLGETVRSLPHCHHMFHLPC 693

Query: 134 IDLWLESHKTCPVCRTDL 151
           ID WL  H +CP+CR DL
Sbjct: 694 IDKWLFRHGSCPLCRRDL 747


>BP037094 
          Length = 502

 Score = 57.8 bits (138), Expect = 2e-09
 Identities = 24/43 (55%), Positives = 26/43 (59%)
 Frame = -3

Query: 106 CAICLLEFDDDSMLRLLTICCHVFHQECIDLWLESHKTCPVCR 148
           C ICL EF D   +R L  C H FH  CID WL SH +CP CR
Sbjct: 437 CVICLAEFCDGEQIRFLPKCNHHFHVVCIDKWLLSHSSCPTCR 309


>TC17278 similar to UP|Q8GT74 (Q8GT74) NEP1-interacting protein 2, partial
           (62%)
          Length = 610

 Score = 56.2 bits (134), Expect = 7e-09
 Identities = 21/46 (45%), Positives = 29/46 (62%)
 Frame = +3

Query: 106 CAICLLEFDDDSMLRLLTICCHVFHQECIDLWLESHKTCPVCRTDL 151
           C++CL +F     +R L  C H+FH  CID WL  H +CP+CR D+
Sbjct: 318 CSVCLQDFQLGETVRSLPYCHHMFHLPCIDEWLSKHVSCPLCRRDM 455


>AV406818 
          Length = 416

 Score = 55.8 bits (133), Expect = 9e-09
 Identities = 29/63 (46%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
 Frame = +1

Query: 98  KEKSYSLECAICLLEFDDDSMLRLLTICCHVFHQECIDLWLESHKT-CPVC----RTDLD 152
           ++ S S  CA+CL ++     LR+L  CCH FH  C+D WL S +T CPVC    RT L 
Sbjct: 10  EDNSTSGTCAVCLEDYCVGEKLRILP-CCHKFHAACVDSWLTSWRTFCPVCKRDARTGLS 186

Query: 153 SPP 155
            PP
Sbjct: 187 EPP 195


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.319    0.134    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,214,769
Number of Sequences: 28460
Number of extensions: 126229
Number of successful extensions: 1242
Number of sequences better than 10.0: 149
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1172
length of query: 306
length of database: 4,897,600
effective HSP length: 90
effective length of query: 216
effective length of database: 2,336,200
effective search space: 504619200
effective search space used: 504619200
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)


Medicago: description of AC126787.10