BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126787.10 - phase: 0
(306 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC15079 similar to UP|Q84KA9 (Q84KA9) RING/C3HC4/PHD zinc finger... 100 3e-22
TC8813 weakly similar to UP|Q9XF65 (Q9XF65) RING-H2 zinc finger ... 91 3e-19
TC11328 similar to UP|Q84KA9 (Q84KA9) RING/C3HC4/PHD zinc finger... 84 3e-17
AV413409 84 4e-17
BP042964 76 6e-15
TC15481 similar to UP|Q9LUR1 (Q9LUR1) RING zinc finger protein-l... 74 3e-14
TC18336 similar to UP|Q84KA9 (Q84KA9) RING/C3HC4/PHD zinc finger... 73 5e-14
TC11457 71 3e-13
TC14527 similar to PIR|F86340|F86340 protein F2D10.34 [imported]... 70 3e-13
BP067396 69 1e-12
BP055954 64 3e-11
TC11970 similar to UP|Q9FQZ7 (Q9FQZ7) Avr9/Cf-9 rapidly elicited... 62 9e-11
AU252073 60 4e-10
TC10958 similar to PIR|T47938|T47938 RING finger protein - Arabi... 59 8e-10
TC19649 weakly similar to UP|RNF6_HUMAN (Q9Y252) RING finger pro... 59 8e-10
TC9362 similar to PIR|F86340|F86340 protein F2D10.34 [imported] ... 59 1e-09
TC11796 similar to GB|AAP12870.1|30017273|BT006221 At4g35840 {Ar... 58 2e-09
BP037094 58 2e-09
TC17278 similar to UP|Q8GT74 (Q8GT74) NEP1-interacting protein 2... 56 7e-09
AV406818 56 9e-09
>TC15079 similar to UP|Q84KA9 (Q84KA9) RING/C3HC4/PHD zinc finger-like
protein, partial (20%)
Length = 921
Score = 100 bits (249), Expect = 3e-22
Identities = 46/78 (58%), Positives = 56/78 (70%)
Frame = +3
Query: 74 SRGLDNTLLEKFPTFLYSSVKDLRKEKSYSLECAICLLEFDDDSMLRLLTICCHVFHQEC 133
S GL+ +++ FPTFLYS VK L+ K +L CA+CL EF+DD LRL+ IC HV+H C
Sbjct: 531 SNGLNQEVIDTFPTFLYSHVKCLKIGKG-TLACAVCLNEFEDDETLRLIPICNHVYHHSC 707
Query: 134 IDLWLESHKTCPVCRTDL 151
IDLWL SH TCPVCR L
Sbjct: 708 IDLWLASHSTCPVCRASL 761
>TC8813 weakly similar to UP|Q9XF65 (Q9XF65) RING-H2 zinc finger protein
ATL6, partial (24%)
Length = 495
Score = 90.5 bits (223), Expect = 3e-19
Identities = 51/116 (43%), Positives = 66/116 (55%), Gaps = 4/116 (3%)
Frame = +1
Query: 34 FVAFSVVYVCKYCFAGFFHTWALQRTTSG--SLVRLSPDRSP--SRGLDNTLLEKFPTFL 89
F V+ V GFF + Q S S++ ++ RS +RGLD T+++ FP
Sbjct: 151 FAIIIVILVAALFLMGFFSIYIRQCADSNPNSVLPITHARSRRVARGLDQTVIDTFPVLE 330
Query: 90 YSSVKDLRKEKSYSLECAICLLEFDDDSMLRLLTICCHVFHQECIDLWLESHKTCP 145
YS VK K ++LECA+CL EF+D LRL+ C HVFH ECID WL SH TCP
Sbjct: 331 YSEVK-AHKIGKHALECAVCLSEFEDAETLRLIPKCDHVFHTECIDEWLVSHTTCP 495
>TC11328 similar to UP|Q84KA9 (Q84KA9) RING/C3HC4/PHD zinc finger-like
protein, partial (27%)
Length = 793
Score = 84.0 bits (206), Expect = 3e-17
Identities = 62/173 (35%), Positives = 77/173 (43%), Gaps = 4/173 (2%)
Frame = +2
Query: 103 SLECAICLLEFDDDSMLRLLTICCHVFHQECIDLWLESHKTCPVCRTDLDSPPNQMSKHG 162
+LECA+CL EF D LRL+ C HVFH EC+D WL + TCPVCR +L G
Sbjct: 17 TLECAVCLNEFRDHETLRLIPKCSHVFHAECVDAWLVNQSTCPVCRANL--------LQG 172
Query: 163 EGNHNNNNNNLNVQEGMTSLPCDDIHIDVRGEESDNVGEITRAQVHEGDQHDHHVGMSMQ 222
+ + EG S D DN +V + + S
Sbjct: 173 DAATTFVAVQIPDPEGHGSTTPVPGSGDPSPNRVDNSSNNQSPKVGSDLVNQNRPVRSRS 352
Query: 223 QQEDHRFSRSHSTGHSIVTIRGEEKDHEKYTLRLPEHV----IRGGHNYTRSC 271
F RSHSTGHS+ GE D E++TLRLPE V + N T SC
Sbjct: 353 TGFRSWFPRSHSTGHSL----GE--DWERFTLRLPEEVRNRLVNSTLNRTTSC 493
>AV413409
Length = 374
Score = 83.6 bits (205), Expect = 4e-17
Identities = 39/66 (59%), Positives = 46/66 (69%)
Frame = +1
Query: 90 YSSVKDLRKEKSYSLECAICLLEFDDDSMLRLLTICCHVFHQECIDLWLESHKTCPVCRT 149
YS+VKD + K +LECA+CL EF+D LRL+ C HVFH ECID WL SH TCPVCR
Sbjct: 4 YSAVKDHKIGKG-ALECAVCLNEFEDTETLRLIPKCDHVFHPECIDEWLSSHSTCPVCRA 180
Query: 150 DLDSPP 155
+L P
Sbjct: 181 NLTPQP 198
>BP042964
Length = 575
Score = 76.3 bits (186), Expect = 6e-15
Identities = 33/73 (45%), Positives = 46/73 (62%)
Frame = +1
Query: 76 GLDNTLLEKFPTFLYSSVKDLRKEKSYSLECAICLLEFDDDSMLRLLTICCHVFHQECID 135
GLD ++++ P LY+ L E+S +CA+CLL+F+ +R L IC H FH +CID
Sbjct: 226 GLDESVIKTIPFSLYTP--KLHIEESRRSDCAVCLLDFEHQDYVRTLPICSHTFHLDCID 399
Query: 136 LWLESHKTCPVCR 148
WL SH CP+CR
Sbjct: 400 AWLRSHANCPLCR 438
>TC15481 similar to UP|Q9LUR1 (Q9LUR1) RING zinc finger protein-like,
partial (32%)
Length = 706
Score = 73.9 bits (180), Expect = 3e-14
Identities = 33/86 (38%), Positives = 48/86 (55%)
Frame = +1
Query: 75 RGLDNTLLEKFPTFLYSSVKDLRKEKSYSLECAICLLEFDDDSMLRLLTICCHVFHQECI 134
RGL+ +++ P F Y D + ECA+CL EF+ R+L C H FH +CI
Sbjct: 343 RGLEASVITLLPVFSY----DPKAHPEGPPECAVCLSEFESGETGRVLPKCKHAFHTDCI 510
Query: 135 DLWLESHKTCPVCRTDLDSPPNQMSK 160
D+W SH TCP+CRT ++ P ++
Sbjct: 511 DMWFHSHSTCPLCRTLVEPEPENQTQ 588
>TC18336 similar to UP|Q84KA9 (Q84KA9) RING/C3HC4/PHD zinc finger-like
protein, partial (15%)
Length = 761
Score = 73.2 bits (178), Expect = 5e-14
Identities = 53/179 (29%), Positives = 74/179 (40%), Gaps = 11/179 (6%)
Frame = +3
Query: 105 ECAICLLEFDDDSMLRLLTICCHVFHQECIDLWLESHKTCPVCRTDLDSPPNQMSKHGEG 164
ECA+CL EF+ LR+L C HVFH CID+WL SH TCPVCR +
Sbjct: 3 ECAVCLGEFEGPDALRVLPKCGHVFHPGCIDMWLASHVTCPVCRARMAG----------- 149
Query: 165 NHNNNNNNLNVQEGMTSLPCDDIHIDVRGEESDNVGEITRAQVHEGD---------QHDH 215
T+ D+ +++ G + + V EG+ D
Sbjct: 150 ---------------TAPARGDVTVEIGGGNGGALQVFDESSVREGEGENRGGGCGNFDG 284
Query: 216 HVGMSMQQQEDHRFSRSHSTGHSIVTIRGEEKDHEKYTLRLPEHVI--RGGHNYTRSCT 272
V + F RSHSTGHS+V D + ++ + V+ RGG RS +
Sbjct: 285 CVEEGNGSSKVGAFVRSHSTGHSLV-------DEAEKSVEVENQVVEDRGGSLMKRSAS 440
>TC11457
Length = 629
Score = 70.9 bits (172), Expect = 3e-13
Identities = 44/126 (34%), Positives = 55/126 (42%)
Frame = +1
Query: 27 LTVLILCFVAFSVVYVCKYCFAGFFHTWALQRTTSGSLVRLSPDRSPSRGLDNTLLEKFP 86
L L L + S V+V C + T T RL +GL + L+K P
Sbjct: 184 LLALFLPCLGMSAVFVVYMCLLWYATTHHPPET------RLRAKPVSDKGLSASQLQKLP 345
Query: 87 TFLYSSVKDLRKEKSYSLECAICLLEFDDDSMLRLLTICCHVFHQECIDLWLESHKTCPV 146
+ K+ + ECA+CL E D D R+L C H FH EC D WL H CPV
Sbjct: 346 SIT-------GKDLPLASECAVCLDEIDSDQPARVLPGCNHGFHLECADTWLSKHPLCPV 504
Query: 147 CRTDLD 152
CR LD
Sbjct: 505 CRAKLD 522
>TC14527 similar to PIR|F86340|F86340 protein F2D10.34 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(42%)
Length = 1095
Score = 70.5 bits (171), Expect = 3e-13
Identities = 44/140 (31%), Positives = 63/140 (44%), Gaps = 2/140 (1%)
Frame = +2
Query: 11 PPAPTYKTPPALVAFTLTVLILCFVAFSVVYVCKYCFAGFFHTWALQRTTSGSLVRLSPD 70
P A T ++ ++ L ++C V V C W + T G P
Sbjct: 263 PEAVTLESDFVVILAALLCALICVVGLIAVARC---------AWLRRVTGDGGY----PT 403
Query: 71 RSP--SRGLDNTLLEKFPTFLYSSVKDLRKEKSYSLECAICLLEFDDDSMLRLLTICCHV 128
R ++G+ +++ P F Y+ +E + ECAICL EFD +R+L C H
Sbjct: 404 RQALANKGVKKKVVQSLPKFAYADSSP--REWLATTECAICLAEFDAGDEIRVLPQCGHG 577
Query: 129 FHQECIDLWLESHKTCPVCR 148
FH CID WL SH +CP CR
Sbjct: 578 FHVGCIDTWLGSHSSCPSCR 637
>BP067396
Length = 506
Score = 68.9 bits (167), Expect = 1e-12
Identities = 30/66 (45%), Positives = 42/66 (63%)
Frame = -1
Query: 83 EKFPTFLYSSVKDLRKEKSYSLECAICLLEFDDDSMLRLLTICCHVFHQECIDLWLESHK 142
E +P LYS V+ R + S S C+ICL ++ + LR+L C HV+H C+D WL+ H
Sbjct: 452 ESYPKLLYSEVEK-RSDSSVSSCCSICLGDYKEADTLRMLPDCGHVYHLACVDPWLKFHS 276
Query: 143 TCPVCR 148
TCP+CR
Sbjct: 275 TCPICR 258
>BP055954
Length = 518
Score = 63.9 bits (154), Expect = 3e-11
Identities = 29/73 (39%), Positives = 44/73 (59%)
Frame = +1
Query: 76 GLDNTLLEKFPTFLYSSVKDLRKEKSYSLECAICLLEFDDDSMLRLLTICCHVFHQECID 135
GLD ++ +P F Y++ + E + C+ICL EF + MLR++ C H FH C+D
Sbjct: 223 GLDPNVINSYPRFQYAAAERGHGETT----CSICLCEFKEAEMLRMMPECRHHFHLCCLD 390
Query: 136 LWLESHKTCPVCR 148
WL+ + +CPVCR
Sbjct: 391 SWLKLNGSCPVCR 429
>TC11970 similar to UP|Q9FQZ7 (Q9FQZ7) Avr9/Cf-9 rapidly elicited protein
132, partial (24%)
Length = 789
Score = 62.4 bits (150), Expect = 9e-11
Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Frame = +1
Query: 108 ICLLEFDDDSMLRLLTICCHVFHQECIDLWLESHKTCPVCRTDL---DSPPNQMSKHGEG 164
+CL E D+ RLL C H FH +CID+W +SH TCP+CRT + DS N S +
Sbjct: 4 VCLSELDEGEKARLLPKCNHGFHVDCIDMWFQSHSTCPLCRTSVASHDSDNNLQSSSSDS 183
Query: 165 NHNNNNNNL 173
+ N L
Sbjct: 184 SSTFPTNVL 210
>AU252073
Length = 258
Score = 60.5 bits (145), Expect = 4e-10
Identities = 25/62 (40%), Positives = 36/62 (57%)
Frame = +1
Query: 90 YSSVKDLRKEKSYSLECAICLLEFDDDSMLRLLTICCHVFHQECIDLWLESHKTCPVCRT 149
+SS++D +C ICL ++ + +LR++ C H FH CID+WL TCPVCR
Sbjct: 10 FSSIEDT--------QCVICLADYKEREVLRIMPKCGHTFHLSCIDIWLRKQSTCPVCRL 165
Query: 150 DL 151
L
Sbjct: 166 PL 171
>TC10958 similar to PIR|T47938|T47938 RING finger protein - Arabidopsis
thaliana {Arabidopsis thaliana;}, partial (38%)
Length = 779
Score = 59.3 bits (142), Expect = 8e-10
Identities = 21/45 (46%), Positives = 32/45 (70%), Gaps = 1/45 (2%)
Frame = +3
Query: 106 CAICLLEFDDDSMLRLLTICCHVFHQECIDLWLE-SHKTCPVCRT 149
CA+CL EF ++ +R + C H+FH+ C+D W++ KTCP+CRT
Sbjct: 360 CAVCLCEFSEEEEIRCMANCRHIFHRACVDRWIDHDQKTCPLCRT 494
>TC19649 weakly similar to UP|RNF6_HUMAN (Q9Y252) RING finger protein 6
(RING-H2 protein), partial (4%)
Length = 523
Score = 59.3 bits (142), Expect = 8e-10
Identities = 28/93 (30%), Positives = 46/93 (49%)
Frame = +2
Query: 67 LSPDRSPSRGLDNTLLEKFPTFLYSSVKDLRKEKSYSLECAICLLEFDDDSMLRLLTICC 126
L+P R+ + GLD + +P + + R K C ICL E+ ++ + C
Sbjct: 44 LNPRRTNNTGLDGPTIASYPKIVIGD-EGTRLPKPDDKACPICLSEYMPKETVKTIPECE 220
Query: 127 HVFHQECIDLWLESHKTCPVCRTDLDSPPNQMS 159
H FH +CID WL + +CP+CR P +++
Sbjct: 221 HCFHAQCIDEWLPLNASCPICRNSPRKLPQRLA 319
>TC9362 similar to PIR|F86340|F86340 protein F2D10.34 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(58%)
Length = 591
Score = 58.9 bits (141), Expect = 1e-09
Identities = 24/44 (54%), Positives = 29/44 (65%)
Frame = +1
Query: 105 ECAICLLEFDDDSMLRLLTICCHVFHQECIDLWLESHKTCPVCR 148
+CAICL EF +R+L C H FH CID WL+SH +CP CR
Sbjct: 325 DCAICLTEFAAGDEIRVLPQCGHGFHVSCIDAWLKSHSSCPSCR 456
>TC11796 similar to GB|AAP12870.1|30017273|BT006221 At4g35840 {Arabidopsis
thaliana;}, partial (86%)
Length = 1114
Score = 57.8 bits (138), Expect = 2e-09
Identities = 27/78 (34%), Positives = 41/78 (51%)
Frame = +1
Query: 74 SRGLDNTLLEKFPTFLYSSVKDLRKEKSYSLECAICLLEFDDDSMLRLLTICCHVFHQEC 133
++GL +EK P ++ + + C++CL +F +R L C H+FH C
Sbjct: 517 AKGLSGDSVEKIPKIKITTDNNA-DASGERVSCSVCLQDFQLGETVRSLPHCHHMFHLPC 693
Query: 134 IDLWLESHKTCPVCRTDL 151
ID WL H +CP+CR DL
Sbjct: 694 IDKWLFRHGSCPLCRRDL 747
>BP037094
Length = 502
Score = 57.8 bits (138), Expect = 2e-09
Identities = 24/43 (55%), Positives = 26/43 (59%)
Frame = -3
Query: 106 CAICLLEFDDDSMLRLLTICCHVFHQECIDLWLESHKTCPVCR 148
C ICL EF D +R L C H FH CID WL SH +CP CR
Sbjct: 437 CVICLAEFCDGEQIRFLPKCNHHFHVVCIDKWLLSHSSCPTCR 309
>TC17278 similar to UP|Q8GT74 (Q8GT74) NEP1-interacting protein 2, partial
(62%)
Length = 610
Score = 56.2 bits (134), Expect = 7e-09
Identities = 21/46 (45%), Positives = 29/46 (62%)
Frame = +3
Query: 106 CAICLLEFDDDSMLRLLTICCHVFHQECIDLWLESHKTCPVCRTDL 151
C++CL +F +R L C H+FH CID WL H +CP+CR D+
Sbjct: 318 CSVCLQDFQLGETVRSLPYCHHMFHLPCIDEWLSKHVSCPLCRRDM 455
>AV406818
Length = 416
Score = 55.8 bits (133), Expect = 9e-09
Identities = 29/63 (46%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Frame = +1
Query: 98 KEKSYSLECAICLLEFDDDSMLRLLTICCHVFHQECIDLWLESHKT-CPVC----RTDLD 152
++ S S CA+CL ++ LR+L CCH FH C+D WL S +T CPVC RT L
Sbjct: 10 EDNSTSGTCAVCLEDYCVGEKLRILP-CCHKFHAACVDSWLTSWRTFCPVCKRDARTGLS 186
Query: 153 SPP 155
PP
Sbjct: 187 EPP 195
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.134 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,214,769
Number of Sequences: 28460
Number of extensions: 126229
Number of successful extensions: 1242
Number of sequences better than 10.0: 149
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1172
length of query: 306
length of database: 4,897,600
effective HSP length: 90
effective length of query: 216
effective length of database: 2,336,200
effective search space: 504619200
effective search space used: 504619200
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Medicago: description of AC126787.10