BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126786.6 - phase: 0
(228 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CB828787 166 2e-42
TC19059 weakly similar to PIR|E86340|E86340 protein F2D10.32 [im... 154 9e-39
TC14816 40 3e-04
TC13044 similar to UP|FKB7_WHEAT (Q43207) 70 kDa peptidylprolyl ... 35 0.011
TC17293 similar to GB|CAD35362.1|21535744|ATH490171 FK506 bindin... 32 0.070
BP036216 32 0.091
TC16034 homologue to UP|FKB2_VICFA (Q41649) FK506-binding protei... 32 0.091
BP055278 32 0.091
TC9401 similar to UP|Q84LW7 (Q84LW7) Peptidylprolyl cis-trans is... 31 0.20
TC9178 homologue to GB|AAB17725.1|1654142|BCU38470 small GTP-bin... 29 0.59
TC15275 similar to UP|CAC87837 (CAC87837) Cullin 1C (Fragment), ... 28 1.3
TC10263 28 1.3
AV416351 28 1.3
TC9550 homologue to UP|Q84YH4 (Q84YH4) Ubiquitin-conjugating enz... 28 1.3
TC12517 28 1.7
BI418940 27 2.2
TC9332 similar to UP|Q9ARG5 (Q9ARG5) Plasma membrane H+ ATPase, ... 27 2.9
TC9347 27 2.9
AV418253 27 2.9
AV776568 26 6.5
>CB828787
Length = 343
Score = 166 bits (421), Expect = 2e-42
Identities = 76/88 (86%), Positives = 85/88 (96%)
Frame = +1
Query: 141 QPYEFKVGAPPGKERKREFVDNPNGLFSAQAAPKPPQAMYTIVEGMRVGGKRTVIVPPEK 200
+PYEFKVGAPPG+ERKR+FVDNPNGLFSAQA+PKPP AMYTIVEGMRVGGKRTV+VPPE
Sbjct: 79 KPYEFKVGAPPGRERKRDFVDNPNGLFSAQASPKPPAAMYTIVEGMRVGGKRTVLVPPEN 258
Query: 201 GYGKKGMNEIPPGATFELNIELLQLAST 228
GYGK+GMNEIPPGATFE+NIELLQ+ +T
Sbjct: 259 GYGKRGMNEIPPGATFEMNIELLQVKTT 342
>TC19059 weakly similar to PIR|E86340|E86340 protein F2D10.32 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(26%)
Length = 438
Score = 154 bits (390), Expect = 9e-39
Identities = 83/139 (59%), Positives = 100/139 (71%), Gaps = 16/139 (11%)
Frame = +3
Query: 8 CSCSSSSLTWLLKKRNVDHYGGF--------------SLRRRALPVVALS--QSRRSTAI 51
C+C+ +S+T L +K + + GG + R + V ALS QSRRSTA+
Sbjct: 21 CTCTCNSITLLGEKLSFGYGGGGGGGGVLSNLNLNPKAKSRGVVTVAALSPSQSRRSTAV 200
Query: 52 LISSLPFTFVFLSPPPPAEARERRKKKNIPIDDYITSPDGLKYYDFLEGKGPIAEKGSTV 111
LIS LP T +L+ PPPA ARERR KKNIPID+Y+TSPDGLKYYD +EGKG +AEKGSTV
Sbjct: 201 LISLLPLTVDWLTTPPPAAARERRNKKNIPIDEYLTSPDGLKYYDLVEGKGSVAEKGSTV 380
Query: 112 QVHFDCLYRGITAVSSRES 130
QVHFDCLYRG+TAVSSRES
Sbjct: 381 QVHFDCLYRGVTAVSSRES 437
>TC14816
Length = 952
Score = 40.4 bits (93), Expect = 3e-04
Identities = 33/157 (21%), Positives = 67/157 (42%), Gaps = 5/157 (3%)
Frame = +2
Query: 71 ARERRKKKNIPIDDYITSPDGLKYYDFLEGKGPIAEKGSTVQVHFDCLYRGITAVSSRES 130
+++ +++ ++ +T P+G++Y + G G G V + + V S
Sbjct: 359 SQQEANTRDVEKEEEVTLPNGIRYCELKVGGGASPRPGDLVVIDI------MGKVESTGE 520
Query: 131 KLLAGNRVIAQPYEFKVGAPPGKERKREFVDNPNGLFSAQAAPKPPQAMYTIVEGMRVGG 190
+ +P +G+ P ++ E ++ +++ M+ GG
Sbjct: 521 VFVNTFEGDKKPLALVMGSRPYRKGVCEGIEY-------------------VLKTMKAGG 643
Query: 191 KRTVIVPPEKGYGKKGMN-----EIPPGATFELNIEL 222
KR VIVPP+ G+ + G + +IPP AT E +E+
Sbjct: 644 KRKVIVPPQLGFRENGADLGSGVQIPPLATLEYIVEV 754
>TC13044 similar to UP|FKB7_WHEAT (Q43207) 70 kDa peptidylprolyl isomerase
(Peptidyl-prolyl cis-trans isomerase) (PPIase)
(Rotamase) , partial (26%)
Length = 531
Score = 35.0 bits (79), Expect = 0.011
Identities = 17/46 (36%), Positives = 25/46 (53%), Gaps = 1/46 (2%)
Frame = +2
Query: 183 VEGMRVGGKRTVIVPPEKGYGKKGMNE-IPPGATFELNIELLQLAS 227
++ M+ G +PPE YG+ G IPP AT + ++ELL S
Sbjct: 311 IKTMKKGENALFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTS 448
>TC17293 similar to GB|CAD35362.1|21535744|ATH490171 FK506 binding protein 1
{Arabidopsis thaliana;} , partial (21%)
Length = 575
Score = 32.3 bits (72), Expect = 0.070
Identities = 16/44 (36%), Positives = 23/44 (51%), Gaps = 6/44 (13%)
Frame = +3
Query: 186 MRVGGKRTVIVPPEKGYGKKGMN------EIPPGATFELNIELL 223
M GGKRT+ +PPE YG +G IPP + ++E +
Sbjct: 15 MLAGGKRTLKLPPELAYGSRGAGCRGGSCVIPPDSVLLFDVEFV 146
>BP036216
Length = 574
Score = 32.0 bits (71), Expect = 0.091
Identities = 16/46 (34%), Positives = 24/46 (51%), Gaps = 1/46 (2%)
Frame = +1
Query: 183 VEGMRVGGKRTVIVPPEKGYGKKGMNE-IPPGATFELNIELLQLAS 227
++ M+ G +P E YG+ G IPP AT + ++ELL S
Sbjct: 382 IKTMKKGENALFTIPAELAYGESGSPPTIPPNATLQFDVELLSWTS 519
>TC16034 homologue to UP|FKB2_VICFA (Q41649) FK506-binding protein 2
precursor (Peptidyl-prolyl cis-trans isomerase)
(PPIase) (Rotamase) (15 kDa FKBP) (FKBP-15) , partial
(91%)
Length = 592
Score = 32.0 bits (71), Expect = 0.091
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +3
Query: 185 GMRVGGKRTVIVPPEKGYGKKGM-NEIPPGATFELNIELL 223
GM +G KR + +P + GYG++G IP GAT + EL+
Sbjct: 306 GMCLGEKRKLKIPAKLGYGEQGSPPTIPGGATLVFDTELV 425
>BP055278
Length = 449
Score = 32.0 bits (71), Expect = 0.091
Identities = 14/29 (48%), Positives = 16/29 (54%)
Frame = -2
Query: 183 VEGMRVGGKRTVIVPPEKGYGKKGMNEIP 211
V M+VGG R VI+PP GY IP
Sbjct: 430 VRSMKVGGIRRVIIPPSLGYQNTSQEPIP 344
>TC9401 similar to UP|Q84LW7 (Q84LW7) Peptidylprolyl cis-trans isomerase ,
partial (97%)
Length = 918
Score = 30.8 bits (68), Expect = 0.20
Identities = 17/42 (40%), Positives = 22/42 (51%), Gaps = 1/42 (2%)
Frame = +1
Query: 183 VEGMRVGGKRTVIVPPEKGYGKKGMN-EIPPGATFELNIELL 223
V+ M+VG + PE YG G +IPP AT +ELL
Sbjct: 391 VKTMKVGEIAKITCKPEYAYGSAGSPPDIPPDATLVFEVELL 516
>TC9178 homologue to GB|AAB17725.1|1654142|BCU38470 small GTP-binding
protein ARF {Brassica rapa subsp. pekinensis;} ,
complete
Length = 1033
Score = 29.3 bits (64), Expect = 0.59
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +3
Query: 54 SSLPFTFVFLSPPPPAEARERRK 76
SSL F F F PPPP R RR+
Sbjct: 48 SSLSFRFRFHHPPPPISIRHRRR 116
>TC15275 similar to UP|CAC87837 (CAC87837) Cullin 1C (Fragment), partial
(8%)
Length = 562
Score = 28.1 bits (61), Expect = 1.3
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 5/37 (13%)
Frame = +2
Query: 51 ILISSLPF-----TFVFLSPPPPAEARERRKKKNIPI 82
+LI+++PF V +PPPP + +E+++ N PI
Sbjct: 308 LLIAAMPFHNI*CPSVNFTPPPPPKPKEKKRLCNAPI 418
>TC10263
Length = 559
Score = 28.1 bits (61), Expect = 1.3
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = -1
Query: 40 VALSQSRRSTAILISSLPFTFVF---LSPPPPAEARER 74
+++ +RRS ILI L FTF + L PPP E R
Sbjct: 232 LSVGPTRRSHRILIRQLDFTFTYSPRLRPPPRREPVHR 119
>AV416351
Length = 428
Score = 28.1 bits (61), Expect = 1.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 65 PPPPAEARERRKKKNIPIDDYITSP 89
PPPP + +KKN PI+ + SP
Sbjct: 108 PPPPPSSSSSPEKKNSPINHVLPSP 182
>TC9550 homologue to UP|Q84YH4 (Q84YH4) Ubiquitin-conjugating enzyme E2,
complete
Length = 804
Score = 28.1 bits (61), Expect = 1.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 49 TAILISSLPFTFVFLSPPPPAEARER 74
T++ +SSLPF + L P PP R
Sbjct: 10 TSLFVSSLPFLLLLLQPSPPLSPLHR 87
>TC12517
Length = 839
Score = 27.7 bits (60), Expect = 1.7
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -1
Query: 56 LPFTFVFLSPPPPAEARERRKK 77
LPFT FL PPPP A+ R +
Sbjct: 239 LPFTDPFLRPPPPMGAK*NRNR 174
>BI418940
Length = 550
Score = 27.3 bits (59), Expect = 2.2
Identities = 17/40 (42%), Positives = 24/40 (59%), Gaps = 7/40 (17%)
Frame = +1
Query: 57 PFTFVFLSPPPP----AEARERR--KKKNIP-IDDYITSP 89
PF+F F +PPPP + R RR +NIP D+ I++P
Sbjct: 94 PFSFSFSAPPPPPPLHLQLRRRRPPPPENIPNFDNPISAP 213
>TC9332 similar to UP|Q9ARG5 (Q9ARG5) Plasma membrane H+ ATPase, partial
(25%)
Length = 960
Score = 26.9 bits (58), Expect = 2.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 2 TSSLYTCSCSSSSLTWLLKKRNVDHY 27
TSS+Y C C W+L + N D++
Sbjct: 879 TSSIYFCCCFKILKRWILMQ*NTDYF 956
>TC9347
Length = 546
Score = 26.9 bits (58), Expect = 2.9
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +3
Query: 33 RRRALPVVALSQSRRSTAILISSLPFTFVFLSPPPPAEARERRKKKNIPI 82
RRR P V+ S S + A ++ SLPF + P P+ R ++PI
Sbjct: 204 RRRTPPTVSTSTSTFA-APMVPSLPFRLPSIPPSDPSRRRLPPTATSLPI 350
>AV418253
Length = 384
Score = 26.9 bits (58), Expect = 2.9
Identities = 18/43 (41%), Positives = 21/43 (47%), Gaps = 2/43 (4%)
Frame = +3
Query: 4 SLYTCSCSSSSLTWLLKKRNVDHYG--GFSLRRRALPVVALSQ 44
SL +CS SSSS WL G ++RRR ALSQ
Sbjct: 93 SLISCSSSSSSSNWLCHASPKSRLGFSTATIRRRFTLAAALSQ 221
>AV776568
Length = 628
Score = 25.8 bits (55), Expect = 6.5
Identities = 19/66 (28%), Positives = 30/66 (44%), Gaps = 2/66 (3%)
Frame = +1
Query: 30 FSLRRRALPVVALSQSRRSTAILISSLPFTFVFLSPPPPAEARERRKKK--NIPIDDYIT 87
FSL LP A+S+ + L+S PPPP+ A +++K + P
Sbjct: 160 FSLPFLTLPRRAMSKPPSAFDALMSGARAAAAKKKPPPPSAASPKKRKSPHSSPAPAPTL 339
Query: 88 SPDGLK 93
+P+ LK
Sbjct: 340 NPNNLK 357
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.317 0.136 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,445,460
Number of Sequences: 28460
Number of extensions: 71278
Number of successful extensions: 583
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of query: 228
length of database: 4,897,600
effective HSP length: 87
effective length of query: 141
effective length of database: 2,421,580
effective search space: 341442780
effective search space used: 341442780
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)
Medicago: description of AC126786.6