TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC126786.13 - phase: 0 
         (916 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP064665                                                               77  2e-14
BP056069                                                               69  3e-12
TC11481 similar to UP|Q93NP8 (Q93NP8) Wzy, partial (5%)                31  0.77
BP056566                                                               29  2.9
BP039305                                                               29  3.8
BP062076                                                               28  6.5
TC12931 weakly similar to UP|Q8GRK2 (Q8GRK2) Somatic embryogenes...    28  6.5
BI418653                                                               28  6.5
TC16250                                                                28  8.5
BP053877                                                               28  8.5
TC12317                                                                28  8.5

>BP064665 
          Length = 555

 Score = 76.6 bits (187), Expect = 2e-14
 Identities = 35/77 (45%), Positives = 56/77 (72%)
 Frame = +3

Query: 37  FTFDSSIGKVAKLAMEQAVKDVNSNSSILHSTQLVLHMQTSNCSGFDGMIQALRFMETDV 96
           FT DS IG+ AK  +  A++DVN++  IL   +L + +  +NCSGF G ++AL+ ME +V
Sbjct: 324 FTLDSVIGRSAKPGILAAIEDVNADKIILPGIKLEVLLHDTNCSGFLGTVEALQLMEHEV 503

Query: 97  IAILGPQSSVVSHIVAH 113
           +A++GPQSS ++HI++H
Sbjct: 504 VAVIGPQSSGIAHIISH 554


>BP056069 
          Length = 373

 Score = 68.9 bits (167), Expect = 3e-12
 Identities = 41/79 (51%), Positives = 48/79 (59%)
 Frame = -1

Query: 836 HLRGGLLYCSRHIFFADYVTGTTFHSSRISF*CWPTSKISFTHRREERSIEE*KKKEEWR 895
           HLR GLLY   HIFF DYV+  TF S      C   SKIS T   ++R I+E  +KEEWR
Sbjct: 367 HLRDGLLYGPYHIFFPDYVSVITFCSF*FCCNC*SHSKISLTP**KKRYIKEWDQKEEWR 188

Query: 896 *NIT*RSTGKATEEDTKSN 914
             +T* STGK  +EDT  N
Sbjct: 187 RKLT*GSTGKXIQEDTNRN 131


>TC11481 similar to UP|Q93NP8 (Q93NP8) Wzy, partial (5%)
          Length = 441

 Score = 31.2 bits (69), Expect = 0.77
 Identities = 17/69 (24%), Positives = 34/69 (48%), Gaps = 1/69 (1%)
 Frame = +2

Query: 581 LQPFTPFMWIVTACFF-FFVGIVVWILEHRVNDEFRGSPKQQFVTILWFSLSTLFFSHIC 639
           L+P+T  + I+   +F FF  +++W          R + K+  + + ++ + T F++H C
Sbjct: 164 LKPYTTCLSILVLLYFIFFFSLLLW----------RNAFKKMLMPVNFYIVQTDFYTHTC 313

Query: 640 RREHNEYSW 648
           R     Y W
Sbjct: 314 RITCLIYKW 340


>BP056566 
          Length = 467

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 17/46 (36%), Positives = 25/46 (53%)
 Frame = -3

Query: 593 ACFFFFVGIVVWILEHRVNDEFRGSPKQQFVTILWFSLSTLFFSHI 638
           AC F  + I+ + L  RV D F  +P   +V  +W SL  LF+S +
Sbjct: 153 ACGFSMIIIMEFFLCLRVTDFFNPAPILFWVVPIWSSL*LLFYSRM 16


>BP039305 
          Length = 555

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 10/24 (41%), Positives = 15/24 (61%)
 Frame = +1

Query: 595 FFFFVGIVVWILEHRVNDEFRGSP 618
           FFFF  ++ W L H +  +FR +P
Sbjct: 142 FFFFHSLIQWRLHHSLRSQFRRAP 213


>BP062076 
          Length = 551

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 8/15 (53%), Positives = 12/15 (79%)
 Frame = -3

Query: 3   FYYYWLWLVFLFMLP 17
           FY+ W+W+ FLF+ P
Sbjct: 489 FYFTWVWIXFLFLSP 445


>TC12931 weakly similar to UP|Q8GRK2 (Q8GRK2) Somatic embryogenesis receptor
           kinase 1, partial (4%)
          Length = 493

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 11/30 (36%), Positives = 19/30 (62%), Gaps = 1/30 (3%)
 Frame = +3

Query: 570 FKKINSGGWSFLQPFT-PFMWIVTACFFFF 598
           ++ ++   ++ L+PF   F W + ACFFFF
Sbjct: 72  YQALDDDPFNILRPFVYTFHWSIYACFFFF 161


>BI418653 
          Length = 531

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 10/24 (41%), Positives = 15/24 (61%)
 Frame = +2

Query: 639 CRREHNEYSWPRCSTHMVVCGFDN 662
           C+ +   Y WP CS++  V GFD+
Sbjct: 245 CQCQFQGY*WPHCSSYCGVSGFDS 316


>TC16250 
          Length = 444

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 270 PLETMDTLQGALVLRQHTPDTDRKKMFTSKWNNL 303
           P+  M T    LVL  H P+TD+K+  +  +N+L
Sbjct: 261 PVSMMHTQGRWLVLPTHQPETDQKEKSSPNYNSL 362


>BP053877 
          Length = 438

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 12/31 (38%), Positives = 19/31 (60%)
 Frame = -2

Query: 567 VAPFKKINSGGWSFLQPFTPFMWIVTACFFF 597
           + PF+K  +   SF++   PF W++  CFFF
Sbjct: 323 IYPFQK*EA--LSFMKLVGPFSWLIFYCFFF 237


>TC12317 
          Length = 458

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = +1

Query: 574 NSGGWSFLQPFTPFMWIVTACFFFFVGIVVWIL 606
           N G W +L  FT F WI   C FFFV  +  IL
Sbjct: 328 NFGFWRWLY*FTCF-WIFLVC*FFFVSPLPKIL 423


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.338    0.147    0.498 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,310,647
Number of Sequences: 28460
Number of extensions: 298409
Number of successful extensions: 2400
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 2368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2396
length of query: 916
length of database: 4,897,600
effective HSP length: 99
effective length of query: 817
effective length of database: 2,080,060
effective search space: 1699409020
effective search space used: 1699409020
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 60 (27.7 bits)